Wall clock time and date at job start Sat Apr 11 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47183 * 2 1 4 4 C 1.50700 * 109.46944 * 240.00068 * 2 1 3 5 5 O 1.21277 * 120.00384 * 273.55117 * 4 2 1 6 6 N 1.34779 * 119.99731 * 93.54994 * 4 2 1 7 7 C 1.47365 * 126.78632 * 175.24719 * 6 4 2 8 8 C 1.56021 * 105.14475 * 182.05832 * 7 6 4 9 9 H 1.09008 * 116.89163 * 159.04875 * 8 7 6 10 10 C 1.57431 * 99.69370 * 32.50308 * 8 7 6 11 11 C 1.49282 * 126.94788 * 354.96290 * 6 4 2 12 12 H 1.08995 * 116.78680 * 16.28317 * 11 6 4 13 13 C 1.56030 * 104.09268 * 246.67842 * 11 6 4 14 14 N 1.47865 * 105.10033 * 288.76482 * 13 11 6 15 15 C 1.36939 * 126.94200 * 181.97485 * 14 13 11 16 16 H 1.07997 * 120.00020 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00063 * 0.02850 * 15 14 13 18 18 N 1.31624 * 120.00133 * 359.72608 * 17 15 14 19 19 Si 1.86797 * 120.00372 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47261 * 120.00117 * 19 17 15 22 22 H 1.48504 * 109.47235 * 240.00298 * 19 17 15 23 23 C 1.50698 * 109.47168 * 120.00113 * 2 1 3 24 24 C 1.33344 * 125.19176 * 239.71392 * 23 2 1 25 25 C 1.38472 * 114.93142 * 179.79535 * 24 23 2 26 26 C 1.33497 * 114.88560 * 0.50332 * 25 24 23 27 27 Cl 1.73598 * 125.21107 * 179.75770 * 26 25 24 28 28 S 1.75881 * 125.18848 * 60.02467 * 23 2 1 29 29 H 1.08997 * 109.46959 * 55.63159 * 1 2 3 30 30 H 1.08997 * 109.47147 * 175.64101 * 1 2 3 31 31 H 1.09000 * 109.46744 * 295.64086 * 1 2 3 32 32 H 1.09004 * 110.43364 * 63.07180 * 7 6 4 33 33 H 1.09005 * 110.24564 * 300.95458 * 7 6 4 34 34 H 1.08995 * 112.53458 * 191.97984 * 10 8 7 35 35 H 1.08998 * 112.31675 * 64.44157 * 10 8 7 36 36 H 1.09003 * 110.31356 * 169.85750 * 13 11 6 37 37 H 1.08998 * 110.31110 * 47.67450 * 13 11 6 38 38 H 0.96994 * 120.00658 * 180.02562 * 18 17 15 39 39 H 1.08008 * 122.53249 * 359.97438 * 24 23 2 40 40 H 1.08007 * 122.55400 * 180.23739 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.1731 -1.9149 -1.2203 6 7 2.3251 -0.0071 -2.3423 7 6 2.9139 -0.5300 -3.5879 8 6 3.0848 0.7152 -4.5122 9 1 3.8065 0.6307 -5.3248 10 6 3.3753 1.8152 -3.4240 11 6 2.1130 1.4543 -2.5615 12 1 1.9392 2.0638 -1.6748 13 6 1.0149 1.5171 -3.6681 14 7 1.6893 1.0701 -4.9058 15 6 1.1423 0.9918 -6.1588 16 1 1.7412 0.6471 -6.9888 17 6 -0.1817 1.3557 -6.3621 18 7 -0.9131 1.7708 -5.3496 19 14 -0.9277 1.2496 -8.0714 20 1 0.0938 0.7512 -9.0272 21 1 -2.0824 0.3162 -8.0505 22 1 -1.3875 2.5965 -8.4953 23 6 2.0324 -0.7104 1.2304 24 6 2.8067 -0.1662 2.1697 25 6 3.1399 -1.0124 3.2139 26 6 2.6438 -2.2479 3.1160 27 17 2.8976 -3.5225 4.2669 28 16 1.6931 -2.3862 1.6427 29 1 -0.3633 0.5801 -0.8482 30 1 -0.3633 -1.0247 -0.0781 31 1 -0.3633 0.4447 0.9265 32 1 2.2443 -1.2554 -4.0501 33 1 3.8828 -0.9863 -3.3845 34 1 3.3261 2.8261 -3.8284 35 1 4.3081 1.6333 -2.8903 36 1 0.6512 2.5382 -3.7828 37 1 0.1914 0.8466 -3.4225 38 1 -1.8384 2.0247 -5.4915 39 1 3.1458 0.8582 2.1213 40 1 3.7579 -0.6981 4.0421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032722138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:50 Heat of formation + Delta-G solvation = 51.972120 kcal Electronic energy + Delta-G solvation = -25162.168825 eV Core-core repulsion = 21517.422998 eV Total energy + Delta-G solvation = -3644.745826 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.31331 -38.60377 -37.70694 -36.67160 -33.83891 -33.54814 -31.43340 -29.10853 -28.78664 -28.32882 -25.60779 -24.72572 -23.89318 -22.51367 -20.92042 -19.93158 -19.58144 -18.64412 -17.51125 -17.06363 -16.52221 -15.81496 -15.55230 -15.13299 -14.59653 -14.03016 -13.87399 -13.79972 -13.63387 -13.36803 -13.29057 -12.79444 -12.44174 -12.13784 -11.99854 -11.86747 -11.74570 -11.65465 -11.43636 -11.36313 -11.07837 -11.06092 -10.89424 -10.81649 -10.69511 -10.62816 -10.33489 -10.11531 -9.70288 -9.53844 -8.78242 -8.62052 -8.45115 -8.08409 -6.98696 -5.83826 -3.16916 0.72480 1.08009 1.86631 2.15965 2.47655 2.92694 3.32488 3.34007 3.40040 3.42196 4.37376 4.48083 4.60528 4.89822 5.01712 5.10008 5.17895 5.24616 5.27406 5.35132 5.52981 5.54147 5.59171 5.69242 5.75961 5.83030 5.93305 5.98018 6.09515 6.17729 6.20262 6.22817 6.35470 6.44887 6.57326 6.69297 7.28590 7.33886 7.63031 7.98691 8.03178 8.47550 9.04620 9.65160 10.33311 11.29058 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.002695 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.160801 B =10387.243688 C =10621.499861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 H 0.108 0.892 4 C 0.530 3.470 5 O -0.546 6.546 6 N -0.598 5.598 7 C 0.095 3.905 8 C 0.140 3.860 9 H 0.107 0.893 10 C -0.151 4.151 11 C 0.082 3.918 12 H 0.113 0.887 13 C 0.175 3.825 14 N -0.597 5.597 15 C -0.228 4.228 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 C -0.155 4.155 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.172 4.172 27 Cl -0.025 7.025 28 S 0.219 5.781 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.253 0.747 39 H 0.146 0.854 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -1.402 16.456 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 H 0.126 0.874 4 C 0.317 3.683 5 O -0.425 6.425 6 N -0.331 5.331 7 C -0.030 4.030 8 C 0.031 3.969 9 H 0.125 0.875 10 C -0.190 4.190 11 C -0.021 4.021 12 H 0.131 0.869 13 C 0.050 3.950 14 N -0.322 5.322 15 C -0.356 4.356 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.274 4.274 24 C -0.167 4.167 25 C -0.154 4.154 26 C -0.316 4.316 27 Cl 0.003 6.997 28 S 0.484 5.516 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.164 0.836 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.346 -3.365 15.808 17.364 hybrid contribution 0.364 1.011 -0.026 1.075 sum 6.711 -2.354 15.783 17.311 Atomic orbital electron populations 1.21811 0.90982 1.03545 1.03649 1.19795 0.98208 0.99482 0.88514 0.87417 1.19861 0.77959 0.87150 0.83350 1.90676 1.54494 1.13907 1.83390 1.49010 1.60788 1.09979 1.13296 1.23069 0.96769 0.98690 0.84424 1.23295 0.89318 0.90785 0.93513 0.87507 1.24207 0.96088 1.00637 0.98096 1.24498 0.98989 0.80137 0.98440 0.86908 1.21942 0.90678 0.99931 0.82475 1.45221 1.05789 1.76222 1.04921 1.19109 0.94411 1.38057 0.84054 0.90079 1.24793 0.96453 1.01314 0.97726 1.69885 1.08047 1.50090 1.28849 0.86031 0.79075 0.77248 0.83299 1.20456 1.21767 1.21723 1.24211 1.04864 0.97801 1.00485 1.19881 1.00976 1.01623 0.94251 1.20048 1.02867 0.91525 1.00951 1.25563 1.11606 0.94641 0.99811 1.98346 1.95630 1.48762 1.56953 1.84817 1.47572 1.08789 1.10467 0.90255 0.91809 0.91015 0.91108 0.92918 0.89648 0.91543 0.92457 0.93401 0.93664 0.83647 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.08 37.16 0.34 -1.46 16 2 C -0.04 -0.49 2.74 -92.92 -0.25 -0.74 16 3 H 0.11 1.19 6.55 -51.93 -0.34 0.85 16 4 C 0.53 9.14 6.89 -10.98 -0.08 9.06 16 5 O -0.55 -11.02 15.58 5.56 0.09 -10.93 16 6 N -0.60 -10.42 2.93 -157.18 -0.46 -10.88 16 7 C 0.10 1.75 6.33 -1.95 -0.01 1.74 16 8 C 0.14 2.54 5.54 -62.35 -0.35 2.19 16 9 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 10 C -0.15 -2.30 6.84 -22.10 -0.15 -2.45 16 11 C 0.08 1.33 5.00 -62.55 -0.31 1.02 16 12 H 0.11 1.45 6.83 -51.93 -0.35 1.10 16 13 C 0.17 3.78 4.76 -1.67 -0.01 3.78 16 14 N -0.60 -13.79 3.02 -156.12 -0.47 -14.26 16 15 C -0.23 -5.94 10.38 -15.06 -0.16 -6.09 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -25.64 10.56 55.49 0.59 -25.05 16 19 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.15 -2.00 4.95 -36.02 -0.18 -2.18 16 24 C -0.14 -1.51 10.01 -41.21 -0.41 -1.92 16 25 C -0.12 -1.31 10.13 -41.15 -0.42 -1.73 16 26 C -0.17 -2.07 7.10 29.07 0.21 -1.87 16 27 Cl -0.03 -0.27 29.29 -51.86 -1.52 -1.79 16 28 S 0.22 2.96 21.82 -107.50 -2.35 0.62 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.36 7.47 -51.93 -0.39 0.97 16 37 H 0.05 1.20 7.67 -51.93 -0.40 0.80 16 38 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -30.32 355.22 -10.92 -41.25 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.25 Total: 0.31 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.88 Total: -0.93 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.35 Total: -50.19 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.35 Total: 0.62 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.32 -10.92 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032722138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.218 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds