Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47444 * 2 1 4 4 C 1.50706 * 109.47384 * 119.99964 * 2 1 3 5 5 O 1.21288 * 119.99610 * 34.33031 * 4 2 1 6 6 N 1.34770 * 119.99961 * 214.33113 * 4 2 1 7 7 C 1.47863 * 126.94733 * 4.90466 * 6 4 2 8 8 C 1.56001 * 105.11418 * 181.87545 * 7 6 4 9 9 H 1.09008 * 116.16293 * 159.04970 * 8 7 6 10 10 C 1.57080 * 99.47882 * 33.16428 * 8 7 6 11 11 C 1.49294 * 126.94285 * 185.21560 * 6 4 2 12 12 H 1.09010 * 116.14945 * 16.70846 * 11 6 4 13 13 C 1.56011 * 104.09428 * 246.69909 * 11 6 4 14 14 N 1.49063 * 105.20690 * 288.09867 * 13 11 6 15 15 C 1.36939 * 127.54031 * 181.97408 * 14 13 11 16 16 H 1.08004 * 119.99851 * 175.89721 * 15 14 13 17 17 C 1.38816 * 120.00164 * 355.90107 * 15 14 13 18 18 N 1.31610 * 119.99923 * 5.52035 * 17 15 14 19 19 Si 1.86803 * 119.99920 * 185.52624 * 17 15 14 20 20 H 1.48501 * 109.46978 * 94.98727 * 19 17 15 21 21 H 1.48495 * 109.47125 * 214.98986 * 19 17 15 22 22 H 1.48503 * 109.46768 * 334.99248 * 19 17 15 23 23 C 1.50703 * 109.47273 * 239.99785 * 2 1 3 24 24 C 1.33350 * 125.18949 * 119.71619 * 23 2 1 25 25 C 1.38470 * 114.92775 * 179.79907 * 24 23 2 26 26 C 1.33500 * 114.88678 * 0.50062 * 25 24 23 27 27 Cl 1.73595 * 125.20996 * 179.75549 * 26 25 24 28 28 S 1.75879 * 125.19036 * 300.02856 * 23 2 1 29 29 H 1.08997 * 109.46770 * 55.08488 * 1 2 3 30 30 H 1.09005 * 109.47021 * 295.08390 * 1 2 3 31 31 H 1.08995 * 109.47129 * 175.08756 * 1 2 3 32 32 H 1.09005 * 110.31682 * 300.90280 * 7 6 4 33 33 H 1.08996 * 110.31564 * 63.09383 * 7 6 4 34 34 H 1.08997 * 112.36986 * 191.51855 * 10 8 7 35 35 H 1.08996 * 112.36858 * 64.06901 * 10 8 7 36 36 H 1.09012 * 110.31428 * 47.67618 * 13 11 6 37 37 H 1.09003 * 110.31877 * 169.85701 * 13 11 6 38 38 H 0.97009 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.08001 * 122.53221 * 359.97438 * 24 23 2 40 40 H 1.08000 * 122.55665 * 180.23616 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4167 -1.6539 1.6798 6 7 3.1657 -0.2973 1.8315 7 6 3.9778 0.8870 1.4792 8 6 5.1898 0.8558 2.4608 9 1 6.0723 1.4169 2.1530 10 6 5.3635 -0.6984 2.6082 11 6 3.8585 -0.9468 2.9836 12 1 3.5738 -1.9773 3.1964 13 6 3.7071 0.0818 4.1468 14 7 4.6189 1.2073 3.7947 15 6 4.8676 2.3392 4.5241 16 1 5.6056 3.0501 4.1830 17 6 4.1712 2.5728 5.7021 18 7 3.3521 1.6575 6.1748 19 14 4.3967 4.1862 6.6161 20 1 3.3297 5.1370 6.2126 21 1 4.3153 3.9422 8.0786 22 1 5.7245 4.7621 6.2835 23 6 2.0324 -0.7105 -1.2305 24 6 2.7979 -0.1630 -2.1752 25 6 3.1404 -1.0125 -3.2137 26 6 2.6434 -2.2477 -3.1163 27 17 2.8975 -3.5225 -4.2669 28 16 1.6921 -2.3859 -1.6434 29 1 -0.3633 0.5882 -0.8427 30 1 -0.3633 0.4357 0.9308 31 1 -0.3633 -1.0238 -0.0880 32 1 4.3223 0.8164 0.4474 33 1 3.3993 1.7993 1.6242 34 1 6.0424 -0.9650 3.4181 35 1 5.6407 -1.1757 1.6683 36 1 2.6750 0.4261 4.2157 37 1 4.0216 -0.3646 5.0901 38 1 2.8651 1.8209 6.9977 39 1 3.1281 0.8643 -2.1321 40 1 3.7588 -0.6985 -4.0415 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032722141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = 49.874873 kcal Electronic energy + Delta-G solvation = -25273.252435 eV Core-core repulsion = 21628.415665 eV Total energy + Delta-G solvation = -3644.836770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.24627 -38.59144 -37.79180 -36.78168 -33.80307 -33.50001 -31.47164 -29.09930 -28.59770 -28.53991 -25.31826 -24.91896 -23.86940 -22.86557 -20.50883 -19.91383 -19.70473 -18.64434 -17.77476 -16.97616 -16.44383 -15.97198 -15.62183 -15.11083 -14.57253 -14.09027 -14.01312 -13.80762 -13.57575 -13.35765 -13.10225 -12.87021 -12.47649 -12.24095 -12.03879 -11.88071 -11.73032 -11.64346 -11.53147 -11.34865 -11.14856 -11.02951 -10.90607 -10.81760 -10.74244 -10.62036 -10.29463 -10.09953 -9.68008 -9.58104 -8.77722 -8.69910 -8.63767 -8.05795 -6.96723 -5.81742 -3.15319 0.59300 0.92798 1.68784 2.03717 2.37313 2.91520 3.31069 3.34696 3.39569 3.42490 4.38189 4.51295 4.65132 4.92643 5.02596 5.06531 5.14916 5.20823 5.27694 5.34319 5.53453 5.59294 5.64356 5.68556 5.72211 5.80322 5.86821 5.91109 6.07441 6.12748 6.13770 6.25088 6.37576 6.43693 6.55679 6.64121 7.34996 7.44495 7.66603 8.00987 8.04595 8.48051 9.03964 9.66663 10.36857 11.31294 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.002897 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.613293 B = 9663.194323 C = 9883.955389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 H 0.108 0.892 4 C 0.532 3.468 5 O -0.546 6.546 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.141 3.859 9 H 0.105 0.895 10 C -0.152 4.152 11 C 0.099 3.901 12 H 0.113 0.887 13 C 0.173 3.827 14 N -0.596 5.596 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.917 5.917 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.155 4.155 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.162 4.162 27 Cl -0.021 7.021 28 S 0.185 5.815 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.254 0.746 39 H 0.150 0.850 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 -5.459 -19.238 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 H 0.126 0.874 4 C 0.319 3.681 5 O -0.424 6.424 6 N -0.333 5.333 7 C -0.044 4.044 8 C 0.032 3.968 9 H 0.123 0.877 10 C -0.191 4.191 11 C -0.004 4.004 12 H 0.131 0.869 13 C 0.049 3.951 14 N -0.321 5.321 15 C -0.360 4.360 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.274 4.274 24 C -0.159 4.159 25 C -0.149 4.149 26 C -0.306 4.306 27 Cl 0.008 6.992 28 S 0.449 5.551 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.167 0.833 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.117 -7.152 -18.199 19.668 hybrid contribution 0.888 1.998 -0.320 2.210 sum -1.229 -5.154 -18.519 19.262 Atomic orbital electron populations 1.21721 0.91270 1.03290 1.02865 1.19872 0.98085 0.99602 0.88683 0.87390 1.19838 0.79904 0.84140 0.84192 1.90677 1.56249 1.29644 1.65841 1.49206 1.23432 1.27638 1.33049 1.23328 0.94934 0.87798 0.98374 1.23134 0.93445 0.93239 0.86990 0.87693 1.24181 0.95815 0.98280 1.00867 1.24342 0.90608 0.97872 0.87529 0.86882 1.22097 0.94862 0.85703 0.92476 1.45499 1.50190 1.20562 1.15824 1.19039 1.18040 0.96371 1.02552 0.90075 1.24834 0.98919 0.98244 0.98169 1.69916 1.31154 1.32837 1.22387 0.86122 0.77603 0.83088 0.79059 1.21636 1.21744 1.20556 1.24237 1.05089 0.97454 1.00608 1.19969 1.00482 1.01678 0.93791 1.20123 1.02353 0.91394 1.01010 1.25409 1.10560 0.94853 0.99774 1.98357 1.95528 1.48587 1.56746 1.84815 1.48351 1.09087 1.12826 0.91478 0.91143 0.91423 0.92665 0.91048 0.89728 0.91697 0.93278 0.92689 0.93553 0.83278 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.72 37.16 0.32 -1.32 16 2 C -0.04 -0.52 2.83 -92.92 -0.26 -0.78 16 3 H 0.11 1.30 7.11 -51.93 -0.37 0.93 16 4 C 0.53 9.26 6.79 -10.99 -0.07 9.18 16 5 O -0.55 -11.07 16.73 5.55 0.09 -10.98 16 6 N -0.60 -10.65 2.95 -156.79 -0.46 -11.11 16 7 C 0.08 1.31 5.48 -1.69 -0.01 1.30 16 8 C 0.14 2.52 5.47 -62.57 -0.34 2.18 16 9 H 0.11 1.68 8.14 -51.92 -0.42 1.25 16 10 C -0.15 -2.51 6.80 -22.30 -0.15 -2.66 16 11 C 0.10 1.87 5.23 -62.55 -0.33 1.54 16 12 H 0.11 2.10 8.09 -51.92 -0.42 1.68 16 13 C 0.17 4.07 4.82 -1.01 0.00 4.06 16 14 N -0.60 -13.96 3.09 -155.38 -0.48 -14.44 16 15 C -0.23 -6.04 10.37 -15.06 -0.16 -6.19 16 16 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 17 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 18 N -0.92 -26.33 10.69 55.49 0.59 -25.74 16 19 Si 0.91 21.34 29.56 -169.99 -5.02 16.32 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.16 -1.88 5.08 -36.01 -0.18 -2.07 16 24 C -0.13 -1.32 10.01 -41.20 -0.41 -1.74 16 25 C -0.12 -1.15 10.13 -41.15 -0.42 -1.57 16 26 C -0.16 -1.79 7.10 29.07 0.21 -1.58 16 27 Cl -0.02 -0.21 29.29 -51.86 -1.52 -1.73 16 28 S 0.19 2.30 22.88 -107.50 -2.46 -0.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.33 7.66 -51.92 -0.40 0.93 16 37 H 0.06 1.43 7.59 -51.93 -0.39 1.03 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -30.48 358.21 -11.10 -41.58 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.33 Total: 0.73 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.91 Total: 0.13 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.35 Total: -51.29 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.46 Total: -0.16 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.48 -11.10 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032722141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.451 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds