Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47444 * 2 1 4 4 C 1.50706 * 109.47384 * 119.99964 * 2 1 3 5 5 O 1.21288 * 119.99610 * 34.33031 * 4 2 1 6 6 N 1.34770 * 119.99961 * 214.33113 * 4 2 1 7 7 C 1.47863 * 126.94733 * 4.90466 * 6 4 2 8 8 C 1.56001 * 105.11418 * 181.87545 * 7 6 4 9 9 H 1.09008 * 116.16293 * 159.04970 * 8 7 6 10 10 C 1.57080 * 99.47882 * 33.16428 * 8 7 6 11 11 C 1.49294 * 126.94285 * 185.21560 * 6 4 2 12 12 H 1.09010 * 116.14945 * 16.70846 * 11 6 4 13 13 C 1.56011 * 104.09428 * 246.69909 * 11 6 4 14 14 N 1.49063 * 105.20690 * 288.09867 * 13 11 6 15 15 C 1.36939 * 127.54031 * 181.97408 * 14 13 11 16 16 H 1.08004 * 119.99851 * 175.89721 * 15 14 13 17 17 C 1.38816 * 120.00164 * 355.90107 * 15 14 13 18 18 N 1.31610 * 119.99923 * 5.52035 * 17 15 14 19 19 Si 1.86803 * 119.99920 * 185.52624 * 17 15 14 20 20 H 1.48501 * 109.46978 * 94.98727 * 19 17 15 21 21 H 1.48495 * 109.47125 * 214.98986 * 19 17 15 22 22 H 1.48503 * 109.46768 * 334.99248 * 19 17 15 23 23 C 1.50703 * 109.47273 * 239.99785 * 2 1 3 24 24 C 1.33350 * 125.18949 * 119.71619 * 23 2 1 25 25 C 1.38470 * 114.92775 * 179.79907 * 24 23 2 26 26 C 1.33500 * 114.88678 * 0.50062 * 25 24 23 27 27 Cl 1.73595 * 125.20996 * 179.75549 * 26 25 24 28 28 S 1.75879 * 125.19036 * 300.02856 * 23 2 1 29 29 H 1.08997 * 109.46770 * 55.08488 * 1 2 3 30 30 H 1.09005 * 109.47021 * 295.08390 * 1 2 3 31 31 H 1.08995 * 109.47129 * 175.08756 * 1 2 3 32 32 H 1.09005 * 110.31682 * 300.90280 * 7 6 4 33 33 H 1.08996 * 110.31564 * 63.09383 * 7 6 4 34 34 H 1.08997 * 112.36986 * 191.51855 * 10 8 7 35 35 H 1.08996 * 112.36858 * 64.06901 * 10 8 7 36 36 H 1.09012 * 110.31428 * 47.67618 * 13 11 6 37 37 H 1.09003 * 110.31877 * 169.85701 * 13 11 6 38 38 H 0.97009 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.08001 * 122.53221 * 359.97438 * 24 23 2 40 40 H 1.08000 * 122.55665 * 180.23616 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4167 -1.6539 1.6798 6 7 3.1657 -0.2973 1.8315 7 6 3.9778 0.8870 1.4792 8 6 5.1898 0.8558 2.4608 9 1 6.0723 1.4169 2.1530 10 6 5.3635 -0.6984 2.6082 11 6 3.8585 -0.9468 2.9836 12 1 3.5738 -1.9773 3.1964 13 6 3.7071 0.0818 4.1468 14 7 4.6189 1.2073 3.7947 15 6 4.8676 2.3392 4.5241 16 1 5.6056 3.0501 4.1830 17 6 4.1712 2.5728 5.7021 18 7 3.3521 1.6575 6.1748 19 14 4.3967 4.1862 6.6161 20 1 3.3297 5.1370 6.2126 21 1 4.3153 3.9422 8.0786 22 1 5.7245 4.7621 6.2835 23 6 2.0324 -0.7105 -1.2305 24 6 2.7979 -0.1630 -2.1752 25 6 3.1404 -1.0125 -3.2137 26 6 2.6434 -2.2477 -3.1163 27 17 2.8975 -3.5225 -4.2669 28 16 1.6921 -2.3859 -1.6434 29 1 -0.3633 0.5882 -0.8427 30 1 -0.3633 0.4357 0.9308 31 1 -0.3633 -1.0238 -0.0880 32 1 4.3223 0.8164 0.4474 33 1 3.3993 1.7993 1.6242 34 1 6.0424 -0.9650 3.4181 35 1 5.6407 -1.1757 1.6683 36 1 2.6750 0.4261 4.2157 37 1 4.0216 -0.3646 5.0901 38 1 2.8651 1.8209 6.9977 39 1 3.1281 0.8643 -2.1321 40 1 3.7588 -0.6985 -4.0415 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032722141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = 33.275464 kcal Electronic energy + Delta-G solvation = -25273.972239 eV Core-core repulsion = 21628.415665 eV Total energy + Delta-G solvation = -3645.556574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66570 -39.81205 -38.84257 -37.61266 -35.43101 -34.75180 -33.14680 -30.71896 -30.20263 -29.44290 -26.96452 -26.14837 -25.10962 -24.15189 -21.89708 -21.42590 -20.55076 -20.08577 -19.14022 -18.28416 -17.91390 -17.23996 -16.85958 -16.47998 -16.10472 -15.70358 -15.13019 -14.99759 -14.74651 -14.37455 -14.29891 -13.94950 -13.72974 -13.60584 -13.39103 -13.29318 -13.09414 -12.91473 -12.80261 -12.72340 -12.63682 -12.39515 -12.29638 -12.11325 -12.04801 -11.98149 -11.83143 -11.59311 -11.51748 -10.97048 -10.70691 -9.58697 -9.54018 -9.53057 -8.89727 -7.84909 -5.19284 -0.24356 0.08958 0.86440 1.22247 1.47937 1.48789 1.50278 1.57875 1.67724 2.00483 2.49159 3.30997 3.36671 3.52822 3.56791 3.79357 3.89883 3.94767 4.04061 4.20666 4.23581 4.33037 4.51635 4.60362 4.69229 4.73180 4.77815 4.85808 4.93250 4.96422 5.02081 5.07738 5.14381 5.17341 5.24993 5.35864 5.45330 5.53337 5.64936 6.08729 6.65729 7.01280 7.12190 7.70837 8.43388 9.27466 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.002897 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.613293 B = 9663.194323 C = 9883.955389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 H 0.128 0.872 4 C 0.525 3.475 5 O -0.584 6.584 6 N -0.605 5.605 7 C 0.090 3.910 8 C 0.135 3.865 9 H 0.135 0.865 10 C -0.130 4.130 11 C 0.101 3.899 12 H 0.110 0.890 13 C 0.187 3.813 14 N -0.616 5.616 15 C -0.227 4.227 16 H 0.098 0.902 17 C -0.072 4.072 18 N -0.956 5.956 19 Si 0.975 3.025 20 H -0.292 1.292 21 H -0.304 1.304 22 H -0.260 1.260 23 C -0.170 4.170 24 C -0.109 4.109 25 C -0.110 4.110 26 C -0.163 4.163 27 Cl -0.015 7.015 28 S 0.132 5.868 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.100 0.900 36 H -0.001 1.001 37 H 0.014 0.986 38 H 0.243 0.757 39 H 0.180 0.820 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -3.932 -22.807 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.051 4.051 3 H 0.146 0.854 4 C 0.314 3.686 5 O -0.465 6.465 6 N -0.338 5.338 7 C -0.034 4.034 8 C 0.029 3.971 9 H 0.153 0.847 10 C -0.169 4.169 11 C -0.003 4.003 12 H 0.128 0.872 13 C 0.062 3.938 14 N -0.341 5.341 15 C -0.355 4.355 16 H 0.115 0.885 17 C -0.264 4.264 18 N -0.606 5.606 19 Si 0.804 3.196 20 H -0.219 1.219 21 H -0.231 1.231 22 H -0.184 1.184 23 C -0.288 4.288 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.307 4.307 27 Cl 0.014 6.986 28 S 0.396 5.604 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.017 0.983 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.198 0.802 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.039 -5.610 -21.832 22.542 hybrid contribution 0.257 1.470 0.706 1.651 sum 0.296 -4.139 -21.126 21.530 Atomic orbital electron populations 1.21732 0.91036 1.02951 1.03315 1.19801 0.98296 0.99954 0.87050 0.85439 1.20680 0.79075 0.83789 0.85055 1.90655 1.57156 1.31511 1.67179 1.49306 1.23944 1.28074 1.32426 1.23251 0.93444 0.86505 1.00233 1.23553 0.94835 0.94145 0.84582 0.84701 1.24070 0.93282 0.97324 1.02234 1.24121 0.93221 0.96425 0.86516 0.87200 1.21683 0.92169 0.86967 0.93028 1.45739 1.50298 1.19848 1.18205 1.19536 1.17001 0.96872 1.02127 0.88454 1.25661 0.99675 1.01267 0.99820 1.70157 1.32994 1.34821 1.22595 0.85102 0.78159 0.79446 0.76910 1.21933 1.23118 1.18408 1.24061 1.06944 0.96851 1.00938 1.20320 0.98296 1.02809 0.92468 1.20461 1.01744 0.90574 1.01447 1.25484 1.10383 0.95597 0.99191 1.98362 1.95426 1.48577 1.56257 1.85056 1.49903 1.10759 1.14699 0.88473 0.92667 0.92707 0.87790 0.92402 0.90290 0.88179 0.98273 0.96742 0.94791 0.80246 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.72 71.98 0.63 -2.52 16 2 C -0.03 -0.69 2.83 -12.28 -0.03 -0.72 16 3 H 0.13 2.61 7.11 -2.39 -0.02 2.59 16 4 C 0.53 17.99 6.79 87.66 0.60 18.58 16 5 O -0.58 -24.39 16.73 -3.05 -0.05 -24.44 16 6 N -0.61 -20.74 2.95 -768.35 -2.26 -23.00 16 7 C 0.09 2.59 5.48 87.16 0.48 3.07 16 8 C 0.14 4.43 5.47 46.92 0.26 4.68 16 9 H 0.14 3.65 8.14 -2.38 -0.02 3.63 16 10 C -0.13 -3.96 6.80 33.46 0.23 -3.74 16 11 C 0.10 3.82 5.23 46.93 0.25 4.07 16 12 H 0.11 4.21 8.09 -2.38 -0.02 4.19 16 13 C 0.19 9.21 4.82 86.93 0.42 9.63 16 14 N -0.62 -28.75 3.09 -645.52 -2.00 -30.75 16 15 C -0.23 -11.71 10.37 84.03 0.87 -10.84 16 16 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 18 N -0.96 -57.89 10.69 21.65 0.23 -57.66 16 19 Si 0.97 44.57 29.56 68.60 2.03 46.59 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 C -0.17 -3.62 5.08 24.58 0.12 -3.50 16 24 C -0.11 -1.71 10.01 21.22 0.21 -1.49 16 25 C -0.11 -1.70 10.13 21.25 0.22 -1.49 16 26 C -0.16 -3.16 7.10 66.75 0.47 -2.68 16 27 Cl -0.01 -0.26 29.29 -2.72 -0.08 -0.34 16 28 S 0.13 3.13 22.88 -56.49 -1.29 1.84 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.43 7.70 -2.39 -0.02 1.42 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.00 -0.06 7.66 -2.38 -0.02 -0.07 16 37 H 0.01 0.81 7.59 -2.39 -0.02 0.79 16 38 H 0.24 14.55 8.31 -92.70 -0.77 13.77 16 39 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.16 358.21 2.81 -68.35 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.05 Total: 9.84 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.18 Total: 9.56 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.03 Total: -111.40 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.29 Total: 1.84 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -71.16 2.81 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032722141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.626 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds