Wall clock time and date at job start Sat Apr 11 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48502 * 109.47272 * 264.98709 * 3 2 1 5 5 H 1.48498 * 109.47165 * 24.99114 * 3 2 1 6 6 H 1.48499 * 109.47018 * 144.98973 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 186.97601 * 7 2 1 9 9 N 1.36935 * 119.99565 * 6.97792 * 7 2 1 10 10 C 1.48252 * 126.39560 * 4.59904 * 9 7 2 11 11 C 1.55294 * 106.99423 * 184.93721 * 10 9 7 12 12 C 1.53740 * 101.87303 * 22.49262 * 11 10 9 13 13 H 1.08996 * 111.31176 * 79.82426 * 12 11 10 14 14 C 1.52245 * 114.74215 * 207.22033 * 12 11 10 15 15 N 1.47721 * 106.36537 * 169.57607 * 14 12 11 16 16 C 1.34777 * 119.68212 * 127.93568 * 15 14 12 17 17 O 1.21652 * 119.99828 * 175.43543 * 16 15 14 18 18 C 1.47043 * 120.00196 * 355.44110 * 16 15 14 19 19 C 1.44513 * 123.49230 * 32.58444 * 18 16 15 20 20 C 1.32690 * 113.09825 * 179.97438 * 19 18 16 21 21 S 1.75494 * 110.63223 * 0.02562 * 20 19 18 22 22 C 1.36221 * 123.49301 * 212.28948 * 18 16 15 23 23 Cl 1.73600 * 124.60462 * 0.03530 * 22 18 16 24 24 C 1.46599 * 120.63132 * 307.96441 * 15 14 12 25 25 C 1.53952 * 110.57765 * 47.80194 * 24 15 14 26 26 C 1.45467 * 126.40363 * 184.62220 * 9 7 2 27 27 H 1.08997 * 108.77699 * 265.96011 * 26 9 7 28 28 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.95190 * 65.60323 * 10 9 7 30 30 H 1.08997 * 109.94129 * 304.26623 * 10 9 7 31 31 H 1.09000 * 110.95426 * 264.33255 * 11 10 9 32 32 H 1.09001 * 110.95504 * 140.64438 * 11 10 9 33 33 H 1.09004 * 110.06462 * 288.78838 * 14 12 11 34 34 H 1.09002 * 110.06670 * 50.36194 * 14 12 11 35 35 H 1.07999 * 123.45026 * 359.97438 * 19 18 16 36 36 H 1.07998 * 124.68186 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.25592 * 168.08795 * 24 15 14 38 38 H 1.09001 * 109.25489 * 287.52074 * 24 15 14 39 39 H 1.09002 * 109.87593 * 68.40468 * 25 24 15 40 40 H 1.08992 * 109.88192 * 189.48259 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6036 1.9853 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4907 1.4730 0.8033 7 6 2.0102 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1131 9 7 1.3331 -2.3836 -0.1451 10 6 -0.1181 -2.5396 -0.4050 11 6 -0.4259 -4.0611 -0.3616 12 6 0.7449 -4.5969 0.4785 13 1 0.5748 -4.4362 1.5430 14 6 1.1239 -6.0436 0.1936 15 7 2.4015 -6.2850 0.8948 16 6 2.5191 -7.3419 1.7228 17 8 3.5917 -7.5942 2.2384 18 6 1.3511 -8.1901 2.0027 19 6 0.3032 -8.4470 1.0412 20 6 -0.6509 -9.2406 1.5107 21 16 -0.3050 -9.7116 3.1655 22 6 1.1475 -8.8199 3.1933 23 17 2.2194 -8.7238 4.5555 24 6 3.5425 -5.3855 0.6992 25 6 3.1023 -3.9162 0.8327 26 6 1.9032 -3.7199 -0.0720 27 1 2.1545 -4.0497 -1.0800 28 1 -0.4850 0.8401 0.0004 29 1 -0.3652 -2.1386 -1.3880 30 1 -0.6912 -2.0227 0.3647 31 1 -0.4150 -4.4897 -1.3638 32 1 -1.3790 -4.2521 0.1315 33 1 0.3546 -6.7142 0.5765 34 1 1.2517 -6.1926 -0.8786 35 1 0.2974 -8.0351 0.0429 36 1 -1.5207 -9.5529 0.9519 37 1 4.3037 -5.6022 1.4486 38 1 3.9609 -5.5464 -0.2944 39 1 2.8260 -3.7046 1.8656 40 1 3.9127 -3.2569 0.5222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036834416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:28 Heat of formation + Delta-G solvation = 47.442529 kcal Electronic energy + Delta-G solvation = -25519.651661 eV Core-core repulsion = 21874.709417 eV Total energy + Delta-G solvation = -3644.942244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.56331 -38.51555 -37.31319 -36.69529 -35.26327 -32.59099 -31.89875 -30.00476 -29.45290 -28.23446 -25.64963 -24.70514 -23.69402 -22.05961 -21.03649 -20.16913 -19.68221 -19.13813 -18.28808 -16.71045 -16.42357 -15.95464 -15.24595 -15.12395 -14.81672 -14.51314 -14.09438 -13.96011 -13.76426 -13.47229 -13.28562 -12.99782 -12.93318 -12.50427 -12.29309 -11.89599 -11.68186 -11.58007 -11.41812 -11.16903 -11.07819 -10.82531 -10.75222 -10.65087 -10.14904 -10.14434 -9.88127 -9.84095 -9.63627 -9.46009 -9.07186 -8.77022 -8.66140 -8.46634 -6.84721 -5.71036 -3.07225 0.37300 0.75591 1.42219 1.71184 1.97434 2.97333 3.21390 3.39647 3.44958 3.46139 4.36092 4.48701 4.72157 4.80643 4.91843 5.15982 5.27151 5.33333 5.41481 5.45555 5.52704 5.59319 5.60998 5.76553 5.80064 5.87144 5.92635 6.10619 6.17235 6.24213 6.37537 6.45638 6.58239 6.64658 6.83522 7.05137 7.41557 7.46765 7.63452 7.79319 8.20004 8.24430 9.17449 9.81747 10.49118 11.38597 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.003132 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.244457 B = 8936.434306 C = 9534.644050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.169 3.831 11 C -0.134 4.134 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.090 3.910 15 N -0.595 5.595 16 C 0.572 3.428 17 O -0.530 6.530 18 C -0.142 4.142 19 C -0.112 4.112 20 C -0.225 4.225 21 S 0.217 5.783 22 C -0.129 4.129 23 Cl 0.013 6.987 24 C 0.118 3.882 25 C -0.128 4.128 26 C 0.168 3.832 27 H 0.020 0.980 28 H 0.252 0.748 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -21.036 2.980 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.145 4.145 13 H 0.099 0.901 14 C -0.032 4.032 15 N -0.327 5.327 16 C 0.358 3.642 17 O -0.408 6.408 18 C -0.161 4.161 19 C -0.141 4.141 20 C -0.360 4.360 21 S 0.481 5.519 22 C -0.275 4.275 23 Cl 0.041 6.959 24 C -0.004 4.004 25 C -0.167 4.167 26 C 0.060 3.940 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.169 -21.780 4.425 22.450 hybrid contribution 1.199 2.009 -1.000 2.545 sum -1.970 -19.771 3.424 20.162 Atomic orbital electron populations 1.69915 1.04923 1.25023 1.56891 1.24783 0.95628 0.97653 1.02324 0.86179 0.78633 0.83566 0.77651 1.21602 1.21747 1.20731 1.18990 0.90806 0.82538 1.43050 0.90407 1.44259 1.04456 0.99500 1.83605 1.21654 0.84992 0.88614 1.00253 1.22697 0.96631 0.99717 0.98292 1.22647 0.98133 0.93109 1.00627 0.90123 1.22686 0.85220 0.98495 0.96833 1.48101 1.14308 1.26028 1.44288 1.17473 0.87069 0.80604 0.79020 1.90810 1.27646 1.70983 1.51359 1.20322 0.98733 1.03490 0.93526 1.21500 0.92590 0.98775 1.01215 1.25588 1.05612 1.05852 0.98939 1.83173 1.11834 1.46180 1.10686 1.25180 1.01007 1.06488 0.94851 1.98410 1.61939 1.96812 1.38701 1.21656 0.87626 0.89255 1.01885 1.21884 0.99843 0.93635 1.01383 1.20660 0.91380 0.87032 0.94957 0.96225 0.93784 0.95393 0.91265 0.92430 0.92052 0.87554 0.90820 0.81030 0.80439 0.89342 0.91829 0.91449 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.52 55.49 0.58 -25.98 16 2 C -0.01 -0.21 5.46 -17.43 -0.10 -0.30 16 3 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.11 9.84 -15.06 -0.15 -6.26 16 8 H 0.08 2.04 7.28 -52.49 -0.38 1.66 16 9 N -0.59 -14.56 3.35 -163.03 -0.55 -15.11 16 10 C 0.17 3.93 5.57 -1.86 -0.01 3.92 16 11 C -0.13 -2.29 6.53 -25.13 -0.16 -2.45 16 12 C -0.12 -2.07 2.86 -89.36 -0.26 -2.33 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 14 C 0.09 1.16 4.71 -3.76 -0.02 1.14 16 15 N -0.60 -8.77 3.00 -173.89 -0.52 -9.29 16 16 C 0.57 8.85 7.39 -12.69 -0.09 8.76 16 17 O -0.53 -9.61 15.04 5.23 0.08 -9.53 16 18 C -0.14 -1.81 5.56 -104.58 -0.58 -2.39 16 19 C -0.11 -1.06 7.93 -39.00 -0.31 -1.36 16 20 C -0.22 -1.67 11.11 28.84 0.32 -1.34 16 21 S 0.22 1.81 23.02 -107.50 -2.47 -0.67 16 22 C -0.13 -1.55 6.85 30.01 0.21 -1.35 16 23 Cl 0.01 0.16 27.75 -51.86 -1.44 -1.28 16 24 C 0.12 1.81 6.31 -3.49 -0.02 1.79 16 25 C -0.13 -2.29 5.50 -27.00 -0.15 -2.44 16 26 C 0.17 3.29 2.55 -67.99 -0.17 3.11 16 27 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.07 1.81 6.78 -51.93 -0.35 1.46 16 31 H 0.06 0.88 8.11 -51.93 -0.42 0.45 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 1.16 3.33 -52.63 -0.18 0.99 16 34 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.17 1.34 5.75 -52.49 -0.30 1.04 16 36 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.09 1.40 6.99 -51.93 -0.36 1.03 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 40 H 0.08 1.39 7.64 -51.93 -0.40 0.99 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -31.84 340.66 -10.60 -42.44 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.89 Total: -1.12 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.49 Total: -1.50 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.48 Total: -50.38 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.67 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.44 Total: -1.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.84 -10.60 -42.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036834416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.882 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds