Wall clock time and date at job start Sat Apr 11 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48502 * 109.47272 * 264.98709 * 3 2 1 5 5 H 1.48498 * 109.47165 * 24.99114 * 3 2 1 6 6 H 1.48499 * 109.47018 * 144.98973 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 186.97601 * 7 2 1 9 9 N 1.36935 * 119.99565 * 6.97792 * 7 2 1 10 10 C 1.48252 * 126.39560 * 4.59904 * 9 7 2 11 11 C 1.55294 * 106.99423 * 184.93721 * 10 9 7 12 12 C 1.53740 * 101.87303 * 22.49262 * 11 10 9 13 13 H 1.08996 * 111.31176 * 79.82426 * 12 11 10 14 14 C 1.52245 * 114.74215 * 207.22033 * 12 11 10 15 15 N 1.47721 * 106.36537 * 169.57607 * 14 12 11 16 16 C 1.34777 * 119.68212 * 127.93568 * 15 14 12 17 17 O 1.21652 * 119.99828 * 175.43543 * 16 15 14 18 18 C 1.47043 * 120.00196 * 355.44110 * 16 15 14 19 19 C 1.44513 * 123.49230 * 32.58444 * 18 16 15 20 20 C 1.32690 * 113.09825 * 179.97438 * 19 18 16 21 21 S 1.75494 * 110.63223 * 0.02562 * 20 19 18 22 22 C 1.36221 * 123.49301 * 212.28948 * 18 16 15 23 23 Cl 1.73600 * 124.60462 * 0.03530 * 22 18 16 24 24 C 1.46599 * 120.63132 * 307.96441 * 15 14 12 25 25 C 1.53952 * 110.57765 * 47.80194 * 24 15 14 26 26 C 1.45467 * 126.40363 * 184.62220 * 9 7 2 27 27 H 1.08997 * 108.77699 * 265.96011 * 26 9 7 28 28 H 0.97006 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.95190 * 65.60323 * 10 9 7 30 30 H 1.08997 * 109.94129 * 304.26623 * 10 9 7 31 31 H 1.09000 * 110.95426 * 264.33255 * 11 10 9 32 32 H 1.09001 * 110.95504 * 140.64438 * 11 10 9 33 33 H 1.09004 * 110.06462 * 288.78838 * 14 12 11 34 34 H 1.09002 * 110.06670 * 50.36194 * 14 12 11 35 35 H 1.07999 * 123.45026 * 359.97438 * 19 18 16 36 36 H 1.07998 * 124.68186 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.25592 * 168.08795 * 24 15 14 38 38 H 1.09001 * 109.25489 * 287.52074 * 24 15 14 39 39 H 1.09002 * 109.87593 * 68.40468 * 25 24 15 40 40 H 1.08992 * 109.88192 * 189.48259 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6036 1.9853 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4907 1.4730 0.8033 7 6 2.0102 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1131 9 7 1.3331 -2.3836 -0.1451 10 6 -0.1181 -2.5396 -0.4050 11 6 -0.4259 -4.0611 -0.3616 12 6 0.7449 -4.5969 0.4785 13 1 0.5748 -4.4362 1.5430 14 6 1.1239 -6.0436 0.1936 15 7 2.4015 -6.2850 0.8948 16 6 2.5191 -7.3419 1.7228 17 8 3.5917 -7.5942 2.2384 18 6 1.3511 -8.1901 2.0027 19 6 0.3032 -8.4470 1.0412 20 6 -0.6509 -9.2406 1.5107 21 16 -0.3050 -9.7116 3.1655 22 6 1.1475 -8.8199 3.1933 23 17 2.2194 -8.7238 4.5555 24 6 3.5425 -5.3855 0.6992 25 6 3.1023 -3.9162 0.8327 26 6 1.9032 -3.7199 -0.0720 27 1 2.1545 -4.0497 -1.0800 28 1 -0.4850 0.8401 0.0004 29 1 -0.3652 -2.1386 -1.3880 30 1 -0.6912 -2.0227 0.3647 31 1 -0.4150 -4.4897 -1.3638 32 1 -1.3790 -4.2521 0.1315 33 1 0.3546 -6.7142 0.5765 34 1 1.2517 -6.1926 -0.8786 35 1 0.2974 -8.0351 0.0429 36 1 -1.5207 -9.5529 0.9519 37 1 4.3037 -5.6022 1.4486 38 1 3.9609 -5.5464 -0.2944 39 1 2.8260 -3.7046 1.8656 40 1 3.9127 -3.2569 0.5222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036834416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:27 Heat of formation + Delta-G solvation = 28.343077 kcal Electronic energy + Delta-G solvation = -25520.479876 eV Core-core repulsion = 21874.709417 eV Total energy + Delta-G solvation = -3645.770459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73256 -39.88166 -38.26056 -37.56608 -36.71291 -34.40382 -33.32691 -31.37951 -30.57141 -29.70349 -27.00655 -26.12949 -25.09086 -23.37202 -22.03205 -21.82215 -20.98125 -20.24663 -19.16644 -18.48212 -17.42640 -17.29072 -16.80659 -16.36765 -16.10655 -15.86376 -15.59488 -14.89755 -14.88862 -14.74844 -14.51509 -14.27126 -14.08477 -13.84876 -13.71473 -13.17228 -13.15143 -13.10472 -12.68042 -12.62391 -12.41367 -12.12447 -12.05952 -12.02316 -11.93340 -11.68587 -11.56509 -11.44104 -11.09000 -10.75952 -10.72151 -9.91423 -9.67780 -9.42989 -8.84314 -7.80757 -5.17749 -0.43379 0.03231 0.71159 0.94762 1.18586 1.45237 1.46423 1.54048 1.86418 2.14947 2.50513 3.34574 3.44006 3.47214 3.81739 3.92744 3.98118 4.03935 4.18240 4.23246 4.28781 4.40571 4.50558 4.62508 4.66654 4.70646 4.79488 4.85325 4.92141 4.98139 5.06016 5.11303 5.16010 5.18839 5.47904 5.54480 5.56741 5.66952 5.84699 6.25059 6.30762 7.05689 7.11129 7.81618 8.48935 9.27178 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019105 B = 0.003132 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.244457 B = 8936.434306 C = 9534.644050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.616 5.616 10 C 0.169 3.831 11 C -0.114 4.114 12 C -0.110 4.110 13 H 0.058 0.942 14 C 0.097 3.903 15 N -0.597 5.597 16 C 0.568 3.432 17 O -0.567 6.567 18 C -0.163 4.163 19 C -0.128 4.128 20 C -0.201 4.201 21 S 0.267 5.733 22 C -0.159 4.159 23 Cl -0.011 7.011 24 C 0.128 3.872 25 C -0.119 4.119 26 C 0.156 3.844 27 H 0.029 0.971 28 H 0.245 0.755 29 H -0.003 1.003 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.100 0.900 35 H 0.193 0.807 36 H 0.219 0.781 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -23.734 1.896 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.341 5.341 10 C 0.045 3.955 11 C -0.153 4.153 12 C -0.130 4.130 13 H 0.076 0.924 14 C -0.024 4.024 15 N -0.329 5.329 16 C 0.356 3.644 17 O -0.447 6.447 18 C -0.183 4.183 19 C -0.155 4.155 20 C -0.337 4.337 21 S 0.532 5.468 22 C -0.305 4.305 23 Cl 0.018 6.982 24 C 0.005 3.995 25 C -0.159 4.159 26 C 0.049 3.951 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.118 0.882 35 H 0.210 0.790 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.464 -24.517 3.335 25.142 hybrid contribution 1.569 2.776 -0.637 3.252 sum -2.895 -21.741 2.699 22.098 Atomic orbital electron populations 1.70135 1.06129 1.25008 1.58467 1.25545 0.96482 1.00690 1.03156 0.85220 0.77602 0.79727 0.77583 1.21288 1.22270 1.19772 1.19331 0.91230 0.83962 1.41610 0.90282 1.44555 1.05322 1.00694 1.83505 1.21499 0.84120 0.92863 0.97058 1.22557 0.97731 0.94634 1.00375 1.22486 0.96389 0.95080 0.99056 0.92384 1.22871 0.85162 0.96025 0.98354 1.48158 1.14583 1.25697 1.44433 1.17942 0.87574 0.80757 0.78149 1.90784 1.29352 1.72062 1.52530 1.20369 0.98975 1.04014 0.94931 1.21574 0.92101 1.00333 1.01506 1.26110 1.05715 1.03561 0.98268 1.83082 1.08711 1.43905 1.11089 1.25574 1.02552 1.08005 0.94364 1.98396 1.63089 1.97021 1.39735 1.21477 0.87927 0.87463 1.02657 1.21760 0.99037 0.95593 0.99484 1.20910 0.93137 0.85364 0.95694 0.95351 0.94577 0.98471 0.95212 0.89450 0.89656 0.84579 0.88221 0.79018 0.76441 0.90170 0.89959 0.93822 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.52 21.65 0.23 -56.58 16 2 C -0.07 -3.74 5.46 84.86 0.46 -3.28 16 3 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.23 -12.88 9.84 84.03 0.83 -12.05 16 8 H 0.08 4.24 7.28 -2.91 -0.02 4.21 16 9 N -0.62 -30.78 3.35 -669.71 -2.25 -33.02 16 10 C 0.17 8.00 5.57 86.83 0.48 8.48 16 11 C -0.11 -3.62 6.53 31.63 0.21 -3.42 16 12 C -0.11 -3.44 2.86 -9.98 -0.03 -3.47 16 13 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 14 C 0.10 2.16 4.71 85.90 0.40 2.57 16 15 N -0.60 -16.52 3.00 -822.30 -2.47 -18.98 16 16 C 0.57 16.91 7.39 86.55 0.64 17.55 16 17 O -0.57 -20.62 15.04 -4.20 -0.06 -20.69 16 18 C -0.16 -3.79 5.56 -19.84 -0.11 -3.90 16 19 C -0.13 -1.83 7.93 22.70 0.18 -1.65 16 20 C -0.20 -1.91 11.11 66.65 0.74 -1.17 16 21 S 0.27 3.51 23.02 -56.49 -1.30 2.21 16 22 C -0.16 -3.56 6.85 67.35 0.46 -3.09 16 23 Cl -0.01 -0.29 27.75 -2.72 -0.08 -0.36 16 24 C 0.13 3.81 6.31 86.68 0.55 4.36 16 25 C -0.12 -4.31 5.50 30.42 0.17 -4.14 16 26 C 0.16 6.01 2.55 45.51 0.12 6.12 16 27 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 28 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.00 -0.15 8.09 -2.39 -0.02 -0.17 16 30 H 0.03 1.62 6.78 -2.39 -0.02 1.61 16 31 H 0.09 2.30 8.11 -2.39 -0.02 2.28 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.14 2.34 3.33 -3.05 -0.01 2.33 16 34 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.19 1.89 5.75 -2.91 -0.02 1.88 16 36 H 0.22 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.08 2.55 6.99 -2.39 -0.02 2.53 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 40 H 0.07 2.53 7.64 -2.39 -0.02 2.51 16 Total: -1.00 -74.28 340.66 2.28 -72.00 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.07 Total: 4.33 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.10 Total: 2.92 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.48 Total: -108.58 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.30 Total: 2.21 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.36 kcal Total: -74.28 2.28 -72.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036834416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.348 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds