Wall clock time and date at job start Sat Apr 11 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86794 * 119.99797 * 2 1 4 4 H 1.48501 * 109.47038 * 240.00050 * 3 2 1 5 5 H 1.48499 * 109.47537 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47070 * 120.00159 * 3 2 1 7 7 C 1.38800 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99387 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99905 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47362 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99459 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00314 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49302 * 179.97438 * 13 11 10 15 15 C 1.53954 * 86.11613 * 155.36443 * 14 13 11 16 16 O 1.42895 * 113.74223 * 269.15575 * 15 14 13 17 17 C 1.53000 * 113.73919 * 137.95313 * 15 14 13 18 18 N 1.46502 * 109.46956 * 185.00085 * 17 15 14 19 19 C 1.34769 * 120.00003 * 180.02562 * 18 17 15 20 20 O 1.21614 * 120.00201 * 0.02562 * 19 18 17 21 21 C 1.47378 * 120.00151 * 180.02562 * 19 18 17 22 22 C 1.47020 * 127.19340 * 179.97438 * 21 19 18 23 23 C 1.34184 * 105.95357 * 179.97438 * 22 21 19 24 24 O 1.34209 * 109.12515 * 0.02562 * 23 22 21 25 25 C 1.33658 * 110.90640 * 359.97438 * 24 23 22 26 26 C 1.47579 * 134.49226 * 0.02562 * 13 11 10 27 27 H 0.97001 * 119.99933 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47047 * 59.99929 * 10 9 7 29 29 H 1.08996 * 109.47168 * 299.99931 * 10 9 7 30 30 H 1.09000 * 113.76720 * 41.07170 * 14 13 11 31 31 H 1.08995 * 113.87469 * 269.67973 * 14 13 11 32 32 H 0.96698 * 114.00115 * 178.06979 * 16 15 14 33 33 H 1.08994 * 109.47025 * 65.00592 * 17 15 14 34 34 H 1.08993 * 109.47183 * 305.00119 * 17 15 14 35 35 H 0.97000 * 119.99846 * 0.02562 * 18 17 15 36 36 H 1.07999 * 127.02375 * 0.22997 * 22 21 19 37 37 H 1.07998 * 125.43737 * 180.02562 * 23 22 21 38 38 H 1.08002 * 125.79551 * 180.02562 * 25 24 23 39 39 H 1.08994 * 113.77293 * 90.33463 * 26 13 11 40 40 H 1.08999 * 113.76835 * 318.93286 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.6891 -7.8107 0.0005 15 6 4.0878 -7.8541 -0.6412 16 8 4.0663 -7.8328 -2.0698 17 6 4.9917 -8.9508 -0.0745 18 7 6.3291 -8.8328 -0.6609 19 6 7.2987 -9.6994 -0.3074 20 8 7.0635 -10.5797 0.4981 21 6 8.6443 -9.5803 -0.8968 22 6 9.8115 -10.4325 -0.6267 23 6 10.8055 -9.9483 -1.3870 24 8 10.3529 -8.8941 -2.0834 25 6 9.0669 -8.6566 -1.8072 26 6 4.3144 -6.4722 -0.0009 27 1 -0.4850 0.8401 0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 1.8943 -8.1688 -0.6539 31 1 2.6493 -8.2495 0.9975 32 1 4.9436 -7.8302 -2.4764 33 1 4.5736 -9.9277 -0.3172 34 1 5.0588 -8.8430 1.0080 35 1 6.5166 -8.1309 -1.3036 36 1 9.8581 -11.2782 0.0434 37 1 11.8095 -10.3438 -1.4314 38 1 8.4647 -7.8674 -2.2327 39 1 4.7519 -6.5166 0.9964 40 1 4.8176 -5.7614 -0.6563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041455456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:01 Heat of formation + Delta-G solvation = -55.512711 kcal Electronic energy + Delta-G solvation = -25784.393820 eV Core-core repulsion = 21694.277937 eV Total energy + Delta-G solvation = -4090.115883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07418 -40.96665 -39.64535 -38.05295 -35.66517 -34.81477 -33.39204 -32.45138 -31.02949 -30.31194 -28.74942 -26.61655 -26.16875 -25.42395 -23.72653 -22.02136 -21.14489 -20.72327 -19.47331 -19.08423 -17.74664 -17.40705 -16.81516 -16.74330 -16.68893 -16.08830 -15.73309 -15.65371 -15.38380 -15.05282 -14.82437 -14.42590 -14.19049 -13.84920 -13.76529 -13.50436 -13.43192 -13.17733 -12.94487 -12.67391 -12.60121 -12.23524 -11.91909 -11.33934 -11.06327 -11.05930 -10.79723 -10.61584 -10.53971 -10.36618 -9.85570 -9.72323 -9.41069 -9.36097 -9.08221 -8.69444 -8.26904 -6.52976 -6.23500 -3.94725 0.78290 1.55243 2.33982 2.48689 2.64673 2.86052 3.01067 3.20552 3.21493 3.26910 3.37194 3.52215 3.76821 4.01238 4.09458 4.16313 4.17956 4.42572 4.52101 4.83621 4.93136 5.07322 5.10884 5.11682 5.12209 5.17096 5.24002 5.34736 5.43327 5.46800 5.54482 5.70012 5.75988 5.85342 5.93621 6.09560 6.38589 6.82794 7.05071 7.56657 7.66543 7.72129 8.32565 8.49404 9.21270 10.83856 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.002094 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.756882 B =13369.825987 C =14861.779811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.559 3.441 12 O -0.512 6.512 13 N -0.643 5.643 14 C 0.127 3.873 15 C 0.082 3.918 16 O -0.520 6.520 17 C 0.105 3.895 18 N -0.729 5.729 19 C 0.591 3.409 20 O -0.529 6.529 21 C -0.238 4.238 22 C -0.165 4.165 23 C -0.038 4.038 24 O -0.172 6.172 25 C 0.024 3.976 26 C 0.078 3.922 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.374 0.626 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.160 0.840 37 H 0.210 0.790 38 H 0.211 0.789 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.614 -20.896 -3.610 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.349 3.651 12 O -0.385 6.385 13 N -0.382 5.382 14 C 0.004 3.996 15 C 0.039 3.961 16 O -0.325 6.325 17 C -0.020 4.020 18 N -0.383 5.383 19 C 0.379 3.621 20 O -0.406 6.406 21 C -0.242 4.242 22 C -0.185 4.185 23 C -0.104 4.104 24 O -0.067 6.067 25 C -0.047 4.047 26 C -0.046 4.046 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.222 0.778 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.178 0.822 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.829 -21.364 -3.114 29.314 hybrid contribution 2.648 1.559 -0.216 3.081 sum 22.477 -19.805 -3.331 30.142 Atomic orbital electron populations 1.70009 1.05949 1.27611 1.46628 1.24999 0.95048 0.99035 0.94514 0.86212 0.79230 0.81203 0.78773 1.19936 1.20776 1.19945 1.22804 0.94826 0.91593 1.59219 0.91009 1.85430 1.04792 0.96281 1.96717 1.23465 1.06557 0.94714 1.04727 1.20011 0.85427 0.85061 0.74600 1.90725 1.14782 1.84872 1.48119 1.49741 1.06821 1.05562 1.76118 1.23062 0.94841 0.81439 1.00295 1.23119 0.97086 0.93340 0.82533 1.86699 1.33080 1.96556 1.16189 1.21958 0.80922 0.99816 0.99280 1.45716 1.11363 1.33948 1.47226 1.17222 0.82843 0.81075 0.80962 1.90824 1.82045 1.33963 1.33751 1.21491 0.95876 1.01722 1.05146 1.22806 0.90771 1.02047 1.02857 1.24013 1.00528 0.89491 0.96345 1.83819 1.24939 1.42467 1.55479 1.24473 0.83033 0.99672 0.97517 1.23905 0.83258 0.96007 1.01397 0.92084 0.89393 0.89353 0.88703 0.88140 0.77776 0.89521 0.89254 0.76998 0.82192 0.77330 0.77218 0.88702 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.14 -2.97 5.91 36.01 0.21 -2.76 16 11 C 0.56 10.94 8.08 -10.99 -0.09 10.86 16 12 O -0.51 -12.16 16.59 5.55 0.09 -12.07 16 13 N -0.64 -8.99 3.61 -178.22 -0.64 -9.63 16 14 C 0.13 1.34 8.24 -2.97 -0.02 1.32 16 15 C 0.08 0.62 1.52 -89.67 -0.14 0.49 16 16 O -0.52 -4.28 13.51 -35.23 -0.48 -4.76 16 17 C 0.10 0.66 5.28 -4.04 -0.02 0.64 16 18 N -0.73 -3.85 5.33 -61.40 -0.33 -4.17 16 19 C 0.59 4.98 7.81 -12.54 -0.10 4.88 16 20 O -0.53 -6.65 16.98 5.27 0.09 -6.56 16 21 C -0.24 -1.63 6.31 -103.28 -0.65 -2.29 16 22 C -0.17 -1.08 11.01 -37.45 -0.41 -1.49 16 23 C -0.04 -0.17 12.03 29.30 0.35 0.18 16 24 O -0.17 -0.93 10.52 7.66 0.08 -0.85 16 25 C 0.02 0.10 11.61 30.07 0.35 0.45 16 26 C 0.08 0.69 8.01 -2.96 -0.02 0.66 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.37 1.36 7.61 45.56 0.35 1.71 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 35 H 0.40 0.84 6.28 -40.82 -0.26 0.59 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.21 0.19 8.06 -52.49 -0.42 -0.23 16 38 H 0.21 0.02 7.47 -52.49 -0.39 -0.38 16 39 H 0.10 0.68 8.03 -51.93 -0.42 0.26 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -41.03 370.48 -6.51 -47.54 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.06 Total: -2.08 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.34 Total: -0.01 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.24 Total: -39.20 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.21 Total: -24.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.03 -6.51 -47.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041455456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.977 kcal (2) G-P(sol) polarization free energy of solvation -41.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds