Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99720 * 3 2 1 6 6 H 1.48502 * 109.47232 * 59.99373 * 3 2 1 7 7 C 1.38796 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00054 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00103 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47188 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99835 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99553 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46687 * 180.02562 * 14 13 11 16 16 O 1.42901 * 113.41367 * 51.80514 * 15 14 13 17 17 C 1.53496 * 114.20747 * 185.00083 * 15 14 13 18 18 N 1.47066 * 87.98824 * 139.65747 * 17 15 14 19 19 C 1.34776 * 136.05807 * 152.84473 * 18 17 15 20 20 O 1.21610 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.47377 * 119.99797 * 179.97438 * 19 18 17 22 22 C 1.47026 * 127.19319 * 180.02562 * 21 19 18 23 23 C 1.34176 * 105.95633 * 179.74224 * 22 21 19 24 24 O 1.34217 * 109.12237 * 359.97438 * 23 22 21 25 25 C 1.33645 * 110.91082 * 0.02562 * 24 23 22 26 26 C 1.47071 * 87.88268 * 333.10148 * 18 17 15 27 27 H 0.97005 * 119.99850 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47058 * 59.99923 * 10 9 7 29 29 H 1.09002 * 109.47519 * 300.00509 * 10 9 7 30 30 H 0.96999 * 120.00387 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.46790 * 60.00728 * 14 13 11 32 32 H 1.09000 * 109.47556 * 300.00181 * 14 13 11 33 33 H 0.96701 * 114.00035 * 313.19350 * 16 15 14 34 34 H 1.09000 * 113.46462 * 24.87743 * 17 15 14 35 35 H 1.09005 * 113.52375 * 254.44945 * 17 15 14 36 36 H 1.08001 * 127.01538 * 359.77225 * 22 21 19 37 37 H 1.07997 * 125.43957 * 180.02562 * 23 22 21 38 38 H 1.08007 * 125.80119 * 180.02562 * 25 24 23 39 39 H 1.09003 * 113.46366 * 141.67944 * 26 18 17 40 40 H 1.08991 * 113.46777 * 272.11805 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 2.3304 -7.7151 -0.0008 15 6 3.5025 -8.6985 -0.0009 16 8 4.4588 -8.4423 1.0297 17 6 3.0883 -10.1714 -0.1230 18 7 4.2323 -10.3644 -1.0268 19 6 5.0326 -11.3919 -1.3734 20 8 4.8618 -12.4896 -0.8785 21 6 6.1142 -11.1856 -2.3530 22 6 7.0730 -12.1869 -2.8425 23 6 7.8599 -11.5460 -3.7202 24 8 7.4700 -10.2646 -3.8062 25 6 6.4310 -10.0270 -2.9998 26 6 4.1228 -8.9412 -1.3810 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8010 -6.1835 -0.0004 31 1 1.7215 -7.8749 -0.8906 32 1 1.7222 -7.8754 0.8894 33 1 4.7177 -7.5136 1.1040 34 1 2.1227 -10.3119 -0.6089 35 1 3.1745 -10.7265 0.8112 36 1 7.1314 -13.2263 -2.5548 37 1 8.6762 -11.9904 -4.2702 38 1 5.9273 -9.0790 -2.8810 39 1 5.0875 -8.4516 -1.5139 40 1 3.4356 -8.7507 -2.2053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041569402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -49.801962 kcal Electronic energy + Delta-G solvation = -25863.191805 eV Core-core repulsion = 21773.323559 eV Total energy + Delta-G solvation = -4089.868246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.99301 -41.28760 -39.33160 -38.43217 -35.92846 -34.33674 -33.33005 -32.49543 -31.19269 -30.24631 -29.01813 -26.80740 -26.30419 -25.49242 -23.42837 -21.91478 -21.10516 -20.70674 -20.01390 -18.54690 -18.02627 -17.43090 -17.02166 -16.67047 -16.54714 -16.15918 -15.76055 -15.64095 -15.44798 -14.86816 -14.81490 -14.65419 -14.19659 -13.95372 -13.67344 -13.40695 -13.37837 -13.25207 -13.04889 -12.84050 -12.65645 -12.34331 -11.94672 -11.45367 -11.12287 -11.09364 -10.82148 -10.69421 -10.29851 -10.27481 -9.88349 -9.61883 -9.33358 -9.21839 -9.18343 -9.12551 -8.32532 -6.58501 -6.28582 -3.99975 0.88956 1.63027 2.18974 2.48787 2.77987 2.89274 2.96153 3.17002 3.20595 3.25204 3.26690 3.47161 3.67960 3.94246 4.11028 4.13463 4.19107 4.38651 4.53277 4.71507 4.79584 4.91615 4.96273 5.07033 5.14617 5.17250 5.20494 5.28598 5.30348 5.42569 5.52969 5.60649 5.75671 5.83282 6.00954 6.25552 6.48287 6.99655 7.18534 7.38857 7.53332 7.75453 8.28406 8.38506 9.17130 10.78817 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.001974 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.463755 B =14182.860680 C =15265.080019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.510 6.510 13 N -0.742 5.742 14 C 0.109 3.891 15 C 0.087 3.913 16 O -0.523 6.523 17 C 0.124 3.876 18 N -0.637 5.637 19 C 0.621 3.379 20 O -0.533 6.533 21 C -0.230 4.230 22 C -0.166 4.166 23 C -0.038 4.038 24 O -0.173 6.173 25 C 0.020 3.980 26 C 0.064 3.936 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.383 0.617 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.211 0.789 38 H 0.211 0.789 39 H 0.086 0.914 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 -20.826 -5.937 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.383 6.383 13 N -0.399 5.399 14 C -0.017 4.017 15 C 0.044 3.956 16 O -0.329 6.329 17 C 0.001 3.999 18 N -0.373 5.373 19 C 0.412 3.588 20 O -0.410 6.410 21 C -0.235 4.235 22 C -0.185 4.185 23 C -0.104 4.104 24 O -0.068 6.068 25 C -0.051 4.051 26 C -0.060 4.060 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.229 0.771 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.178 0.822 37 H 0.227 0.773 38 H 0.228 0.772 39 H 0.105 0.895 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.733 -22.299 -5.831 26.333 hybrid contribution 2.434 1.835 -0.023 3.048 sum 15.167 -20.465 -5.854 26.136 Atomic orbital electron populations 1.70023 1.05960 1.27447 1.46756 1.25003 0.95045 0.99100 0.94472 0.86107 0.79553 0.81823 0.77951 1.19610 1.20544 1.20542 1.22890 0.94918 0.91545 1.59074 0.90825 1.85443 1.04677 0.96428 1.96734 1.23536 1.06802 0.95100 1.05059 1.20337 0.86442 0.86164 0.74910 1.90730 1.15286 1.85458 1.46833 1.45928 1.09818 1.05232 1.78938 1.21710 0.94887 0.80573 1.04486 1.22581 0.89512 0.95804 0.87731 1.86602 1.60561 1.32171 1.53607 1.23012 0.90147 0.91590 0.95137 1.49093 1.32492 1.10019 1.45677 1.16657 0.79885 0.82090 0.80136 1.90808 1.71789 1.23417 1.55025 1.21406 1.02128 0.95100 1.04838 1.22790 0.95732 1.00698 0.99304 1.24000 1.02419 0.81127 1.02895 1.83824 1.40534 1.29410 1.53036 1.24799 0.88987 0.99641 0.91637 1.24005 1.02236 0.80935 0.98800 0.92167 0.89048 0.89086 0.77145 0.89582 0.89644 0.76764 0.87413 0.88721 0.82179 0.77290 0.77242 0.89547 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.36 13.22 55.49 0.73 -24.63 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.58 9.50 30.94 0.29 -14.29 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.74 6.16 36.01 0.22 -2.52 16 11 C 0.54 8.43 7.85 -10.98 -0.09 8.34 16 12 O -0.51 -10.31 15.86 5.56 0.09 -10.22 16 13 N -0.74 -7.09 5.32 -60.29 -0.32 -7.41 16 14 C 0.11 0.89 5.37 -4.04 -0.02 0.86 16 15 C 0.09 0.58 1.65 -90.24 -0.15 0.43 16 16 O -0.52 -4.02 13.55 -35.23 -0.48 -4.50 16 17 C 0.12 0.96 8.05 -8.51 -0.07 0.90 16 18 N -0.64 -5.76 3.69 -186.67 -0.69 -6.45 16 19 C 0.62 7.38 8.06 -12.54 -0.10 7.27 16 20 O -0.53 -8.34 17.76 5.27 0.09 -8.25 16 21 C -0.23 -2.24 6.31 -103.27 -0.65 -2.89 16 22 C -0.17 -1.39 11.01 -37.45 -0.41 -1.81 16 23 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 24 O -0.17 -1.29 10.52 7.67 0.08 -1.20 16 25 C 0.02 0.14 11.29 30.08 0.34 0.48 16 26 C 0.06 0.36 6.53 -8.64 -0.06 0.30 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.09 1.46 8.14 -51.91 -0.42 1.04 16 30 H 0.39 2.43 7.24 -40.82 -0.30 2.13 16 31 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.38 1.75 7.50 45.56 0.34 2.09 16 34 H 0.11 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.21 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.21 0.88 5.23 -52.48 -0.27 0.60 16 39 H 0.09 0.34 6.26 -51.93 -0.32 0.02 16 40 H 0.11 0.44 8.00 -51.93 -0.42 0.02 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -39.17 365.81 -6.54 -45.71 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.89 Total: 0.39 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.44 Total: -0.88 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.28 Total: -38.49 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.21 Total: -24.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.17 -6.54 -45.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.097 kcal (2) G-P(sol) polarization free energy of solvation -39.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds