Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99720 * 3 2 1 6 6 H 1.48502 * 109.47232 * 59.99373 * 3 2 1 7 7 C 1.38796 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00054 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00103 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47188 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99835 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99553 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46687 * 180.02562 * 14 13 11 16 16 O 1.42901 * 113.41367 * 51.80514 * 15 14 13 17 17 C 1.53496 * 114.20747 * 185.00083 * 15 14 13 18 18 N 1.47066 * 87.98824 * 139.65747 * 17 15 14 19 19 C 1.34776 * 136.05807 * 152.84473 * 18 17 15 20 20 O 1.21610 * 120.00102 * 0.02562 * 19 18 17 21 21 C 1.47377 * 119.99797 * 179.97438 * 19 18 17 22 22 C 1.47026 * 127.19319 * 180.02562 * 21 19 18 23 23 C 1.34176 * 105.95633 * 179.74224 * 22 21 19 24 24 O 1.34217 * 109.12237 * 359.97438 * 23 22 21 25 25 C 1.33645 * 110.91082 * 0.02562 * 24 23 22 26 26 C 1.47071 * 87.88268 * 333.10148 * 18 17 15 27 27 H 0.97005 * 119.99850 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47058 * 59.99923 * 10 9 7 29 29 H 1.09002 * 109.47519 * 300.00509 * 10 9 7 30 30 H 0.96999 * 120.00387 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.46790 * 60.00728 * 14 13 11 32 32 H 1.09000 * 109.47556 * 300.00181 * 14 13 11 33 33 H 0.96701 * 114.00035 * 313.19350 * 16 15 14 34 34 H 1.09000 * 113.46462 * 24.87743 * 17 15 14 35 35 H 1.09005 * 113.52375 * 254.44945 * 17 15 14 36 36 H 1.08001 * 127.01538 * 359.77225 * 22 21 19 37 37 H 1.07997 * 125.43957 * 180.02562 * 23 22 21 38 38 H 1.08007 * 125.80119 * 180.02562 * 25 24 23 39 39 H 1.09003 * 113.46366 * 141.67944 * 26 18 17 40 40 H 1.08991 * 113.46777 * 272.11805 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 2.3304 -7.7151 -0.0008 15 6 3.5025 -8.6985 -0.0009 16 8 4.4588 -8.4423 1.0297 17 6 3.0883 -10.1714 -0.1230 18 7 4.2323 -10.3644 -1.0268 19 6 5.0326 -11.3919 -1.3734 20 8 4.8618 -12.4896 -0.8785 21 6 6.1142 -11.1856 -2.3530 22 6 7.0730 -12.1869 -2.8425 23 6 7.8599 -11.5460 -3.7202 24 8 7.4700 -10.2646 -3.8062 25 6 6.4310 -10.0270 -2.9998 26 6 4.1228 -8.9412 -1.3810 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8010 -6.1835 -0.0004 31 1 1.7215 -7.8749 -0.8906 32 1 1.7222 -7.8754 0.8894 33 1 4.7177 -7.5136 1.1040 34 1 2.1227 -10.3119 -0.6089 35 1 3.1745 -10.7265 0.8112 36 1 7.1314 -13.2263 -2.5548 37 1 8.6762 -11.9904 -4.2702 38 1 5.9273 -9.0790 -2.8810 39 1 5.0875 -8.4516 -1.5139 40 1 3.4356 -8.7507 -2.2053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041569402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -82.926917 kcal Electronic energy + Delta-G solvation = -25864.628211 eV Core-core repulsion = 21773.323559 eV Total energy + Delta-G solvation = -4091.304652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.54441 -41.96076 -40.47585 -39.33860 -36.65994 -35.31469 -34.54975 -33.95321 -32.00333 -31.15580 -29.92975 -27.72345 -27.35230 -27.00217 -24.10464 -22.44564 -21.85302 -21.72832 -20.61826 -19.94444 -18.98757 -18.32999 -17.85790 -17.67217 -17.20795 -16.90643 -16.84919 -16.63065 -16.47986 -16.37883 -15.87282 -15.53359 -15.22640 -14.91543 -14.57514 -14.53962 -14.27783 -14.03550 -13.97271 -13.84714 -13.44175 -13.20432 -13.12210 -12.89440 -12.88551 -12.58256 -12.14201 -11.67875 -11.42691 -11.13259 -11.03195 -10.93980 -10.92576 -10.21534 -10.17126 -9.98228 -9.77088 -8.61955 -8.32119 -6.08797 0.26899 1.07380 1.29690 1.43456 1.48505 1.54453 1.60958 1.65032 2.00996 2.15959 2.23312 2.30833 2.71253 3.02655 3.03614 3.32969 3.37297 3.54850 3.66172 3.81542 3.91240 4.04831 4.23636 4.35847 4.37829 4.43295 4.51168 4.59326 4.59520 4.64756 4.68277 4.75472 4.81909 5.01069 5.27997 5.32430 5.45953 5.94377 6.23141 6.42239 6.48230 6.60219 6.94950 7.10252 7.25246 8.76974 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018669 B = 0.001974 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.463755 B =14182.860680 C =15265.080019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.996 3.004 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.114 3.886 15 C 0.104 3.896 16 O -0.540 6.540 17 C 0.112 3.888 18 N -0.640 5.640 19 C 0.612 3.388 20 O -0.590 6.590 21 C -0.265 4.265 22 C -0.200 4.200 23 C -0.019 4.019 24 O -0.176 6.176 25 C 0.040 3.960 26 C 0.067 3.933 27 H 0.270 0.730 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.416 0.584 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.397 0.603 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.155 0.845 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.111 0.889 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.604 -19.835 -7.180 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.282 4.282 11 C 0.326 3.674 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.011 4.011 15 C 0.061 3.939 16 O -0.348 6.348 17 C -0.011 4.011 18 N -0.373 5.373 19 C 0.405 3.595 20 O -0.472 6.472 21 C -0.270 4.270 22 C -0.219 4.219 23 C -0.084 4.084 24 O -0.071 6.071 25 C -0.031 4.031 26 C -0.055 4.055 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.254 0.746 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.173 0.827 37 H 0.265 0.735 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.629 -21.292 -7.079 27.345 hybrid contribution 1.611 1.408 0.386 2.174 sum 17.240 -19.884 -6.693 27.155 Atomic orbital electron populations 1.70189 1.07948 1.28432 1.48274 1.26102 0.95927 1.03308 0.93962 0.84937 0.78762 0.76577 0.77880 1.17833 1.20144 1.20303 1.23238 0.95390 0.91982 1.58349 0.89696 1.85631 1.10778 0.99359 1.97051 1.23382 1.03471 0.94129 1.07200 1.19972 0.86100 0.86487 0.74861 1.90727 1.17504 1.85980 1.49654 1.45510 1.10295 1.04533 1.76376 1.21748 0.95418 0.79455 1.04489 1.22295 0.88906 0.94297 0.88404 1.86604 1.60578 1.33607 1.54033 1.23254 0.90979 0.92180 0.94703 1.49154 1.31981 1.10943 1.45248 1.17059 0.80449 0.81854 0.80130 1.90760 1.73484 1.25673 1.57309 1.21465 1.02712 0.96855 1.05953 1.22964 0.96992 1.00942 1.01046 1.24654 1.02016 0.80291 1.01475 1.83864 1.40453 1.29899 1.52857 1.25235 0.88161 0.99690 0.89989 1.24256 1.04064 0.78677 0.98526 0.92123 0.86983 0.86622 0.74601 0.88667 0.90812 0.75139 0.85360 0.90573 0.82748 0.73501 0.74321 0.87066 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.32 13.22 21.65 0.29 -54.03 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.54 -29.20 9.50 67.95 0.65 -28.55 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.16 -8.02 20.57 -56.49 -1.16 -9.18 16 10 C -0.13 -4.36 6.16 71.24 0.44 -3.92 16 11 C 0.54 15.93 7.85 87.66 0.69 16.62 16 12 O -0.56 -22.50 15.86 -3.02 -0.05 -22.54 16 13 N -0.71 -11.21 5.32 -463.06 -2.46 -13.67 16 14 C 0.11 1.55 5.37 86.38 0.46 2.02 16 15 C 0.10 1.12 1.65 -10.55 -0.02 1.10 16 16 O -0.54 -6.90 13.55 -148.98 -2.02 -8.92 16 17 C 0.11 1.62 8.05 83.18 0.67 2.29 16 18 N -0.64 -10.73 3.69 -863.23 -3.19 -13.91 16 19 C 0.61 14.67 8.06 86.65 0.70 15.37 16 20 O -0.59 -19.59 17.76 -4.06 -0.07 -19.66 16 21 C -0.27 -4.96 6.31 -18.99 -0.12 -5.08 16 22 C -0.20 -3.30 11.01 23.65 0.26 -3.04 16 23 C -0.02 -0.19 12.03 66.89 0.80 0.61 16 24 O -0.18 -2.08 10.52 4.52 0.05 -2.04 16 25 C 0.04 0.46 11.29 67.40 0.76 1.22 16 26 C 0.07 0.51 6.53 83.09 0.54 1.06 16 27 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 28 H 0.11 3.30 8.14 -2.40 -0.02 3.28 16 29 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.42 3.20 7.24 -92.71 -0.67 2.53 16 31 H 0.10 1.25 8.00 -2.39 -0.02 1.23 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.40 2.20 7.50 -74.06 -0.56 1.65 16 34 H 0.13 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.25 0.23 8.06 -2.91 -0.02 0.21 16 38 H 0.24 0.95 5.23 -2.91 -0.02 0.93 16 39 H 0.11 0.34 6.26 -2.39 -0.01 0.32 16 40 H 0.13 0.48 8.00 -2.39 -0.02 0.46 16 Total: -1.00 -90.69 365.81 -0.40 -91.09 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -0.11 Total: 8.17 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.30 Total: 0.80 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -5.36 Total: -81.61 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -2.09 Total: -53.17 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -90.69 -0.40 -91.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.165 kcal (2) G-P(sol) polarization free energy of solvation -90.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds