Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 O 1.42893 * 112.94694 * 53.40419 * 15 14 13 17 17 C 1.53952 * 113.74065 * 281.67451 * 15 14 13 18 18 N 1.47584 * 86.11503 * 222.04511 * 17 15 14 19 19 C 1.34777 * 134.49290 * 204.63718 * 18 17 15 20 20 O 1.21692 * 120.00181 * 180.02562 * 19 18 17 21 21 C 1.46663 * 119.99706 * 359.97438 * 19 18 17 22 22 C 1.36549 * 125.98266 * 180.02562 * 21 19 18 23 23 C 1.40368 * 106.70218 * 179.97438 * 22 21 19 24 24 C 1.35130 * 107.11571 * 359.97438 * 23 22 21 25 25 O 1.33925 * 108.77024 * 359.76197 * 24 23 22 26 26 C 1.47585 * 91.01540 * 24.63938 * 18 17 15 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 0.96704 * 114.00131 * 309.66537 * 16 15 14 34 34 H 1.08999 * 113.76483 * 336.34259 * 17 15 14 35 35 H 1.08993 * 113.77159 * 107.74872 * 17 15 14 36 36 H 1.07997 * 126.64666 * 359.96026 * 22 21 19 37 37 H 1.07998 * 126.43843 * 180.02562 * 23 22 21 38 38 H 1.08001 * 125.61088 * 180.02562 * 24 23 22 39 39 H 1.08998 * 113.76522 * 221.05638 * 26 18 17 40 40 H 1.09000 * 113.76825 * 89.65930 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 8 4.4344 -8.4601 1.0482 17 6 4.1598 -8.8725 -1.3900 18 7 4.2061 -10.3136 -1.0749 19 6 4.9731 -11.3450 -1.4805 20 8 4.7761 -12.4610 -1.0370 21 6 6.0443 -11.1225 -2.4571 22 6 6.8902 -12.0739 -2.9509 23 6 7.7486 -11.4229 -3.8507 24 6 7.3932 -10.1192 -3.8668 25 8 6.3624 -9.9432 -3.0301 26 6 3.0751 -10.1717 -0.1375 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.7281 -7.5411 1.1138 34 1 3.5022 -8.6259 -2.2235 35 1 5.1429 -8.4087 -1.4704 36 1 6.8974 -13.1239 -2.6980 37 1 8.5431 -11.8784 -4.4230 38 1 7.8605 -9.3473 -4.4603 39 1 3.1921 -10.7452 0.7821 40 1 2.0989 -10.3067 -0.6032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041569414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -55.353870 kcal Electronic energy + Delta-G solvation = -25945.616079 eV Core-core repulsion = 21855.507084 eV Total energy + Delta-G solvation = -4090.108995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.09774 -41.11004 -39.31822 -38.48829 -35.85762 -34.30015 -33.53455 -32.48380 -31.27668 -30.22626 -28.93644 -26.90847 -26.21181 -25.46868 -23.15563 -22.16925 -21.03539 -20.66338 -20.06938 -18.55484 -18.09840 -17.40024 -17.02495 -16.82490 -16.56709 -16.25012 -15.70774 -15.50732 -15.35718 -14.85670 -14.61104 -14.27625 -14.03504 -13.92387 -13.53827 -13.44588 -13.38138 -13.22021 -13.09203 -12.97067 -12.64147 -12.43089 -11.92641 -11.46091 -11.11470 -11.08114 -10.88228 -10.80269 -10.51159 -10.38778 -9.87015 -9.58789 -9.37835 -9.17835 -9.10922 -9.04462 -8.30907 -6.57003 -6.27432 -3.98618 0.63126 1.91243 2.05731 2.47445 2.75286 2.84061 2.92717 3.17706 3.21870 3.26998 3.30301 3.51103 3.75754 3.95981 4.14531 4.22554 4.44891 4.46646 4.55497 4.81877 4.95944 5.00011 5.06083 5.08104 5.17128 5.21378 5.26270 5.31843 5.34036 5.45927 5.52512 5.63680 5.78060 5.86395 6.03229 6.29849 6.41045 7.03142 7.05548 7.42869 7.54502 7.57512 8.29625 8.41900 9.18216 10.80007 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002004 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.191265 B =13965.993804 C =15037.170161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.741 5.741 14 C 0.105 3.895 15 C 0.087 3.913 16 O -0.526 6.526 17 C 0.080 3.920 18 N -0.631 5.631 19 C 0.628 3.372 20 O -0.520 6.520 21 C -0.074 4.074 22 C -0.120 4.120 23 C -0.226 4.226 24 C -0.006 4.006 25 O -0.161 6.161 26 C 0.129 3.871 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.395 0.605 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.383 0.617 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.211 0.789 39 H 0.100 0.900 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.290 -20.960 -6.146 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.384 6.384 13 N -0.398 5.398 14 C -0.020 4.020 15 C 0.044 3.956 16 O -0.332 6.332 17 C -0.043 4.043 18 N -0.365 5.365 19 C 0.418 3.582 20 O -0.398 6.398 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.245 4.245 24 C -0.076 4.076 25 O -0.056 6.056 26 C 0.007 3.993 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.229 0.771 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.232 0.768 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.178 0.822 37 H 0.175 0.825 38 H 0.228 0.772 39 H 0.118 0.882 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.869 -22.327 -5.786 26.412 hybrid contribution 2.790 1.856 -0.365 3.371 sum 15.658 -20.471 -6.151 26.497 Atomic orbital electron populations 1.70021 1.05957 1.27433 1.46791 1.25005 0.95043 0.99092 0.94491 0.86108 0.79553 0.81833 0.77940 1.19616 1.20557 1.20540 1.22893 0.94921 0.91560 1.59025 0.90833 1.85437 1.04716 0.96409 1.96730 1.23536 1.06768 0.95122 1.05046 1.20334 0.86447 0.86171 0.74922 1.90728 1.15285 1.85478 1.46921 1.45915 1.09818 1.05242 1.78832 1.21787 0.95132 0.80725 1.04343 1.22974 0.89616 0.95593 0.87432 1.86582 1.62000 1.33415 1.51243 1.24115 1.02867 0.79418 0.97944 1.49558 1.33364 1.08844 1.44756 1.16068 0.79628 0.83142 0.79363 1.90901 1.70214 1.22131 1.56544 1.21942 1.02840 0.84397 1.03436 1.21995 0.94487 1.00720 0.96871 1.21883 1.04253 0.94071 1.04260 1.24489 0.89335 0.98855 0.94882 1.84109 1.42243 1.33055 1.46205 1.23261 0.90255 0.91951 0.93858 0.92177 0.89067 0.89097 0.77142 0.89736 0.89717 0.76753 0.87896 0.88735 0.82192 0.82477 0.77199 0.88181 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 11 C 0.53 8.71 7.85 -10.98 -0.09 8.63 16 12 O -0.51 -10.57 15.86 5.55 0.09 -10.48 16 13 N -0.74 -7.61 5.34 -60.30 -0.32 -7.93 16 14 C 0.11 0.93 5.28 -4.04 -0.02 0.91 16 15 C 0.09 0.64 1.52 -89.69 -0.14 0.51 16 16 O -0.53 -4.32 13.51 -35.23 -0.48 -4.79 16 17 C 0.08 0.57 7.33 -2.97 -0.02 0.55 16 18 N -0.63 -6.11 3.61 -179.79 -0.65 -6.75 16 19 C 0.63 7.49 8.02 -12.86 -0.10 7.39 16 20 O -0.52 -7.69 17.59 5.20 0.09 -7.60 16 21 C -0.07 -0.76 7.07 -36.79 -0.26 -1.02 16 22 C -0.12 -1.07 10.62 -39.39 -0.42 -1.48 16 23 C -0.23 -1.46 10.87 -39.89 -0.43 -1.89 16 24 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 25 O -0.16 -1.38 9.15 5.01 0.05 -1.33 16 26 C 0.13 1.04 8.24 -2.97 -0.02 1.01 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 30 H 0.39 2.75 7.31 -40.82 -0.30 2.45 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 33 H 0.38 1.97 7.61 45.56 0.35 2.32 16 34 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.09 0.63 7.53 -51.93 -0.39 0.24 16 36 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.21 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -38.07 369.22 -6.99 -45.05 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.10 Total: 1.14 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.73 Total: -0.13 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.24 Total: -39.46 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.25 Total: -24.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.07 -6.99 -45.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.300 kcal (2) G-P(sol) polarization free energy of solvation -38.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds