Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 O 1.42893 * 112.94694 * 53.40419 * 15 14 13 17 17 C 1.53952 * 113.74065 * 281.67451 * 15 14 13 18 18 N 1.47584 * 86.11503 * 222.04511 * 17 15 14 19 19 C 1.34777 * 134.49290 * 204.63718 * 18 17 15 20 20 O 1.21692 * 120.00181 * 180.02562 * 19 18 17 21 21 C 1.46663 * 119.99706 * 359.97438 * 19 18 17 22 22 C 1.36549 * 125.98266 * 180.02562 * 21 19 18 23 23 C 1.40368 * 106.70218 * 179.97438 * 22 21 19 24 24 C 1.35130 * 107.11571 * 359.97438 * 23 22 21 25 25 O 1.33925 * 108.77024 * 359.76197 * 24 23 22 26 26 C 1.47585 * 91.01540 * 24.63938 * 18 17 15 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 0.96704 * 114.00131 * 309.66537 * 16 15 14 34 34 H 1.08999 * 113.76483 * 336.34259 * 17 15 14 35 35 H 1.08993 * 113.77159 * 107.74872 * 17 15 14 36 36 H 1.07997 * 126.64666 * 359.96026 * 22 21 19 37 37 H 1.07998 * 126.43843 * 180.02562 * 23 22 21 38 38 H 1.08001 * 125.61088 * 180.02562 * 24 23 22 39 39 H 1.08998 * 113.76522 * 221.05638 * 26 18 17 40 40 H 1.09000 * 113.76825 * 89.65930 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 8 4.4344 -8.4601 1.0482 17 6 4.1598 -8.8725 -1.3900 18 7 4.2061 -10.3136 -1.0749 19 6 4.9731 -11.3450 -1.4805 20 8 4.7761 -12.4610 -1.0370 21 6 6.0443 -11.1225 -2.4571 22 6 6.8902 -12.0739 -2.9509 23 6 7.7486 -11.4229 -3.8507 24 6 7.3932 -10.1192 -3.8668 25 8 6.3624 -9.9432 -3.0301 26 6 3.0751 -10.1717 -0.1375 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.7281 -7.5411 1.1138 34 1 3.5022 -8.6259 -2.2235 35 1 5.1429 -8.4087 -1.4704 36 1 6.8974 -13.1239 -2.6980 37 1 8.5431 -11.8784 -4.4230 38 1 7.8605 -9.3473 -4.4603 39 1 3.1921 -10.7452 0.7821 40 1 2.0989 -10.3067 -0.6032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041569414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -86.789489 kcal Electronic energy + Delta-G solvation = -25946.979230 eV Core-core repulsion = 21855.507084 eV Total energy + Delta-G solvation = -4091.472146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67058 -41.84382 -40.48460 -39.41822 -36.62278 -35.33293 -34.55599 -34.10184 -32.12952 -31.23852 -29.86308 -27.71593 -27.52722 -26.94247 -23.82585 -22.72261 -21.86061 -21.70905 -20.71611 -19.95700 -19.08906 -18.42600 -17.84912 -17.70582 -17.43677 -17.01345 -16.85691 -16.62662 -16.45448 -16.29997 -15.85733 -15.35185 -15.06661 -14.76069 -14.57469 -14.40628 -14.17305 -14.05472 -13.97160 -13.88643 -13.59059 -13.23450 -13.12985 -13.05744 -12.89706 -12.59235 -12.19936 -11.71022 -11.63056 -11.13825 -11.12813 -11.08106 -10.95277 -10.22790 -10.18960 -10.11262 -9.63611 -8.62939 -8.32637 -6.09571 -0.03238 1.28551 1.37775 1.39461 1.43131 1.49759 1.59608 1.63289 1.88616 2.00432 2.18497 2.30033 2.71147 3.02015 3.05202 3.32737 3.37779 3.54306 3.81881 3.92006 4.02449 4.05778 4.22967 4.35787 4.40267 4.44613 4.55599 4.57496 4.58995 4.62108 4.67645 4.80539 4.88812 4.96051 5.30916 5.37268 5.45273 5.84813 6.22584 6.30848 6.41181 6.57525 6.77054 7.09529 7.23206 8.76550 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002004 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.191265 B =13965.993804 C =15037.170161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.110 3.890 15 C 0.105 3.895 16 O -0.540 6.540 17 C 0.084 3.916 18 N -0.635 5.635 19 C 0.619 3.381 20 O -0.566 6.566 21 C -0.107 4.107 22 C -0.127 4.127 23 C -0.234 4.234 24 C 0.010 3.990 25 O -0.167 6.167 26 C 0.119 3.881 27 H 0.270 0.730 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.415 0.585 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.183 0.817 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.262 -20.205 -7.264 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.282 4.282 11 C 0.325 3.675 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.015 4.015 15 C 0.062 3.938 16 O -0.349 6.349 17 C -0.038 4.038 18 N -0.367 5.367 19 C 0.411 3.589 20 O -0.448 6.448 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.253 4.253 24 C -0.059 4.059 25 O -0.062 6.062 26 C -0.002 4.002 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.253 0.747 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.175 0.825 37 H 0.200 0.800 38 H 0.270 0.730 39 H 0.108 0.892 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.898 -21.566 -6.901 27.667 hybrid contribution 1.978 1.510 -0.048 2.489 sum 17.876 -20.057 -6.949 27.751 Atomic orbital electron populations 1.70186 1.07955 1.28461 1.48234 1.26114 0.95940 1.03325 0.93927 0.84926 0.78732 0.76513 0.77914 1.17861 1.20119 1.20222 1.23237 0.95382 0.91968 1.58425 0.89726 1.85623 1.10712 0.99339 1.97050 1.23380 1.03508 0.94123 1.07148 1.19989 0.86107 0.86497 0.74863 1.90724 1.17446 1.85992 1.49697 1.45526 1.10275 1.04619 1.76327 1.21837 0.95667 0.79609 1.04355 1.22704 0.88930 0.94516 0.87627 1.86583 1.62006 1.34796 1.51468 1.24268 1.03717 0.77832 0.97953 1.49679 1.33136 1.09478 1.44438 1.16364 0.80118 0.82965 0.79474 1.90853 1.71718 1.23800 1.58455 1.21711 1.03760 0.85508 1.04888 1.22258 0.94679 1.00748 0.97063 1.22217 1.04613 0.94354 1.04098 1.25406 0.87563 0.99752 0.93175 1.84089 1.43156 1.32292 1.46663 1.23488 0.90958 0.92182 0.93622 0.92097 0.86956 0.86756 0.74716 0.90550 0.89082 0.75187 0.86385 0.87703 0.82507 0.79968 0.72998 0.89231 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.65 13.22 21.65 0.29 -54.36 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 42.17 29.55 68.60 2.03 44.20 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -29.55 9.50 67.96 0.65 -28.90 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.13 -4.51 6.16 71.24 0.44 -4.07 16 11 C 0.54 16.71 7.85 87.66 0.69 17.40 16 12 O -0.56 -23.18 15.86 -3.04 -0.05 -23.22 16 13 N -0.71 -12.64 5.34 -463.07 -2.47 -15.11 16 14 C 0.11 1.72 5.28 86.38 0.46 2.17 16 15 C 0.11 1.34 1.52 -10.13 -0.02 1.33 16 16 O -0.54 -7.69 13.51 -148.98 -2.01 -9.70 16 17 C 0.08 1.01 7.33 86.48 0.63 1.64 16 18 N -0.63 -11.80 3.61 -844.77 -3.05 -14.85 16 19 C 0.62 15.02 8.02 86.44 0.69 15.72 16 20 O -0.57 -17.64 17.59 -4.32 -0.08 -17.72 16 21 C -0.11 -2.15 7.07 24.08 0.17 -1.98 16 22 C -0.13 -2.19 10.62 22.39 0.24 -1.95 16 23 C -0.23 -2.47 10.87 22.07 0.24 -2.23 16 24 C 0.01 0.09 12.08 67.10 0.81 0.90 16 25 O -0.17 -2.49 9.15 -4.99 -0.05 -2.54 16 26 C 0.12 1.82 8.24 86.48 0.71 2.54 16 27 H 0.27 15.03 8.31 -92.72 -0.77 14.26 16 28 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 29 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.42 4.17 7.31 -92.71 -0.68 3.50 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 33 H 0.40 2.88 7.61 -74.05 -0.56 2.32 16 34 H 0.12 1.11 8.03 -2.39 -0.02 1.09 16 35 H 0.10 1.08 7.53 -2.39 -0.02 1.06 16 36 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.25 -0.30 8.06 -2.91 -0.02 -0.32 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.13 1.42 8.10 -2.39 -0.02 1.40 16 Total: -1.00 -86.89 369.22 -0.51 -87.40 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -0.14 Total: 11.49 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.18 Total: 3.67 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -5.23 Total: -84.33 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -2.18 Total: -53.18 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -86.89 -0.51 -87.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.615 kcal (2) G-P(sol) polarization free energy of solvation -86.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds