Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48504 * 109.46783 * 239.99930 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47111 * 119.99786 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.47541 * 125.67094 * 0.02623 * 9 7 2 11 11 C 1.55141 * 105.06530 * 203.97295 * 10 9 7 12 12 C 1.53879 * 101.45117 * 324.20568 * 11 10 9 13 13 C 1.53041 * 111.37378 * 154.99985 * 12 11 10 14 14 C 1.54716 * 104.47659 * 121.00831 * 13 12 11 15 15 N 1.48260 * 104.66567 * 23.66948 * 14 13 12 16 16 C 1.34775 * 127.73284 * 141.18818 * 15 14 13 17 17 O 1.21659 * 120.00343 * 352.98445 * 16 15 14 18 18 C 1.47047 * 119.99988 * 172.98949 * 16 15 14 19 19 C 1.44508 * 123.48874 * 349.59682 * 18 16 15 20 20 C 1.32693 * 113.09413 * 179.97438 * 19 18 16 21 21 S 1.75495 * 110.63214 * 359.97438 * 20 19 18 22 22 C 1.36218 * 123.49095 * 169.30235 * 18 16 15 23 23 Cl 1.73596 * 124.60926 * 0.02562 * 22 18 16 24 24 C 1.48449 * 104.53077 * 321.18915 * 15 14 13 25 25 C 1.47593 * 125.81028 * 180.02562 * 9 7 2 26 26 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.34111 * 85.03901 * 10 9 7 28 28 H 1.09000 * 110.33931 * 322.89697 * 10 9 7 29 29 H 1.08998 * 111.02977 * 82.25352 * 11 10 9 30 30 H 1.09006 * 111.02405 * 206.12329 * 11 10 9 31 31 H 1.09000 * 110.43282 * 239.76129 * 13 12 11 32 32 H 1.08997 * 110.43105 * 2.13978 * 13 12 11 33 33 H 1.09005 * 110.38976 * 142.46298 * 14 13 12 34 34 H 1.08999 * 110.39913 * 264.75279 * 14 13 12 35 35 H 1.07997 * 123.45320 * 359.96023 * 19 18 16 36 36 H 1.08000 * 124.68033 * 179.97438 * 20 19 18 37 37 H 1.09001 * 110.46198 * 279.69756 * 24 15 14 38 38 H 1.08998 * 110.46637 * 157.11404 * 24 15 14 39 39 H 1.08996 * 109.94500 * 58.62099 * 25 9 7 40 40 H 1.09004 * 109.96195 * 297.37894 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1425 -2.5339 0.0017 11 6 -0.4084 -3.9354 0.6117 12 6 0.7788 -4.7409 0.0554 13 6 1.1085 -5.9381 0.9500 14 6 0.9544 -7.1674 0.0233 15 7 1.1458 -6.6317 -1.3458 16 6 1.7948 -7.2113 -2.3750 17 8 2.4163 -8.2423 -2.1992 18 6 1.7519 -6.5975 -3.7106 19 6 0.8713 -5.5058 -4.0585 20 6 1.0039 -5.1114 -5.3184 21 16 2.2243 -6.0677 -6.1406 22 6 2.5423 -6.9951 -4.7463 23 17 3.7124 -8.2745 -4.6590 24 6 0.4624 -5.3140 -1.3291 25 6 1.9305 -3.7344 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5282 -2.4843 -1.0165 28 1 -0.6001 -1.7597 0.6176 29 1 -0.3810 -3.8996 1.7007 30 1 -1.3568 -4.3415 0.2596 31 1 2.1312 -5.8663 1.3201 32 1 0.4067 -5.9961 1.7820 33 1 1.7175 -7.9120 0.2501 34 1 -0.0406 -7.6000 0.1283 35 1 0.1763 -5.0572 -3.3642 36 1 0.4388 -4.3122 -5.7749 37 1 -0.6131 -5.4409 -1.4523 38 1 0.8627 -4.6672 -2.1098 39 1 2.5695 -3.8541 0.8776 40 1 2.5128 -3.8816 -0.9069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041724223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = 46.425532 kcal Electronic energy + Delta-G solvation = -25493.013641 eV Core-core repulsion = 21848.027297 eV Total energy + Delta-G solvation = -3644.986344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.44358 -38.65861 -37.14948 -36.52560 -35.60026 -32.65681 -30.79208 -29.71115 -29.36239 -28.12882 -25.95933 -25.21629 -23.98670 -22.12336 -20.92071 -20.35878 -19.43794 -18.71141 -18.26054 -16.90165 -16.28494 -15.86811 -15.59401 -14.87645 -14.63143 -14.37807 -14.13790 -13.95334 -13.70774 -13.56163 -13.25488 -13.20380 -12.57577 -12.28705 -12.02893 -11.75002 -11.64931 -11.57705 -11.50017 -11.39051 -11.05882 -10.97494 -10.93026 -10.77448 -10.25208 -10.06863 -9.96721 -9.85403 -9.73319 -9.48565 -9.00561 -8.75756 -8.67341 -8.53217 -6.86539 -5.68426 -3.09549 0.44435 0.85820 1.53872 1.83196 2.07056 3.03543 3.29180 3.38484 3.43152 3.43979 4.43899 4.47569 4.74462 4.75768 4.90250 4.98375 5.13113 5.29087 5.37823 5.45200 5.47191 5.63208 5.68265 5.77894 5.82860 5.87387 5.92772 5.94699 6.04876 6.16783 6.31582 6.38362 6.51446 6.57084 6.72800 6.81345 7.43796 7.58346 7.59512 7.81584 8.19698 8.32303 9.19167 9.79454 10.44732 11.35385 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003699 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.063995 B = 7567.106164 C = 8820.693577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.132 4.132 12 C -0.083 4.083 13 C -0.120 4.120 14 C 0.109 3.891 15 N -0.614 5.614 16 C 0.597 3.403 17 O -0.530 6.530 18 C -0.145 4.145 19 C -0.114 4.114 20 C -0.221 4.221 21 S 0.216 5.784 22 C -0.125 4.125 23 Cl 0.015 6.985 24 C 0.103 3.897 25 C 0.151 3.849 26 H 0.252 0.748 27 H 0.011 0.989 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.026 0.974 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -13.868 -8.652 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.171 4.171 12 C -0.085 4.085 13 C -0.159 4.159 14 C -0.014 4.014 15 N -0.348 5.348 16 C 0.385 3.615 17 O -0.408 6.408 18 C -0.164 4.164 19 C -0.142 4.142 20 C -0.356 4.356 21 S 0.480 5.520 22 C -0.272 4.272 23 Cl 0.044 6.956 24 C -0.019 4.019 25 C 0.025 3.975 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.026 -14.347 -10.113 17.553 hybrid contribution 0.007 0.866 1.438 1.678 sum 0.033 -13.482 -8.675 16.032 Atomic orbital electron populations 1.69779 1.04824 1.24841 1.57714 1.24746 0.95701 0.97578 1.02460 0.86182 0.78444 0.83134 0.77926 1.21258 1.21558 1.21180 1.19024 0.90465 0.82458 1.43022 0.90670 1.44659 1.01832 0.99566 1.86938 1.21984 0.84706 0.92524 0.98106 1.22999 0.94980 0.98738 1.00369 1.21596 0.98505 0.94779 0.93604 1.22500 1.02786 0.93102 0.97468 1.22392 1.01444 0.96984 0.80542 1.48869 1.54013 1.20500 1.11395 1.16945 0.78503 0.83702 0.82393 1.90826 1.41961 1.24115 1.83947 1.20227 1.00713 1.00531 0.94920 1.21851 1.00292 0.95403 0.96633 1.25612 1.04826 1.06601 0.98577 1.83122 1.34354 1.25490 1.09040 1.25217 1.00682 1.00553 1.00722 1.98399 1.53632 1.45692 1.97923 1.22894 0.96795 0.83358 0.98817 1.21264 0.92819 0.85417 0.98004 0.93722 0.97087 0.87644 0.91593 0.92051 0.90762 0.90062 0.90070 0.91160 0.80964 0.80398 0.90682 0.88472 0.95567 0.96154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.00 10.29 -15.06 -0.15 -6.16 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.71 3.42 -170.16 -0.58 -15.29 16 10 C 0.15 3.39 5.81 -2.34 -0.01 3.38 16 11 C -0.13 -2.22 5.90 -25.14 -0.15 -2.36 16 12 C -0.08 -1.32 0.79 -153.93 -0.12 -1.44 16 13 C -0.12 -1.59 6.31 -25.81 -0.16 -1.75 16 14 C 0.11 1.39 7.10 -2.17 -0.02 1.37 16 15 N -0.61 -8.98 3.33 -170.92 -0.57 -9.55 16 16 C 0.60 9.65 7.84 -12.69 -0.10 9.55 16 17 O -0.53 -9.73 15.25 5.23 0.08 -9.65 16 18 C -0.14 -2.09 5.93 -104.58 -0.62 -2.71 16 19 C -0.11 -1.41 8.66 -39.00 -0.34 -1.75 16 20 C -0.22 -2.30 11.11 28.84 0.32 -1.98 16 21 S 0.22 2.19 23.02 -107.50 -2.47 -0.28 16 22 C -0.12 -1.68 6.87 30.01 0.21 -1.47 16 23 Cl 0.01 0.20 27.27 -51.86 -1.41 -1.21 16 24 C 0.10 1.47 4.26 -2.89 -0.01 1.46 16 25 C 0.15 3.04 6.37 -3.42 -0.02 3.01 16 26 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.11 2.72 5.88 -51.93 -0.31 2.41 16 29 H 0.07 1.11 7.90 -51.93 -0.41 0.70 16 30 H 0.06 0.88 7.65 -51.93 -0.40 0.48 16 31 H 0.07 1.02 7.41 -51.93 -0.38 0.64 16 32 H 0.08 0.94 7.62 -51.93 -0.40 0.55 16 33 H 0.08 1.07 7.84 -51.93 -0.41 0.66 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.17 2.05 4.71 -52.49 -0.25 1.80 16 36 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.08 0.94 7.52 -51.93 -0.39 0.55 16 38 H 0.10 1.49 4.64 -51.93 -0.24 1.25 16 39 H 0.03 0.54 7.48 -51.93 -0.39 0.15 16 40 H 0.02 0.43 7.63 -51.93 -0.40 0.03 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -30.98 342.73 -10.31 -41.29 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.78 Total: -0.57 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.28 Total: -1.19 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.59 Total: -50.13 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.47 Total: -0.28 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.41 Total: -1.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.98 -10.31 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041724223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.718 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds