Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99735 * 2 1 4 4 H 1.48504 * 109.46783 * 239.99930 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47111 * 119.99786 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.47541 * 125.67094 * 0.02623 * 9 7 2 11 11 C 1.55141 * 105.06530 * 203.97295 * 10 9 7 12 12 C 1.53879 * 101.45117 * 324.20568 * 11 10 9 13 13 C 1.53041 * 111.37378 * 154.99985 * 12 11 10 14 14 C 1.54716 * 104.47659 * 121.00831 * 13 12 11 15 15 N 1.48260 * 104.66567 * 23.66948 * 14 13 12 16 16 C 1.34775 * 127.73284 * 141.18818 * 15 14 13 17 17 O 1.21659 * 120.00343 * 352.98445 * 16 15 14 18 18 C 1.47047 * 119.99988 * 172.98949 * 16 15 14 19 19 C 1.44508 * 123.48874 * 349.59682 * 18 16 15 20 20 C 1.32693 * 113.09413 * 179.97438 * 19 18 16 21 21 S 1.75495 * 110.63214 * 359.97438 * 20 19 18 22 22 C 1.36218 * 123.49095 * 169.30235 * 18 16 15 23 23 Cl 1.73596 * 124.60926 * 0.02562 * 22 18 16 24 24 C 1.48449 * 104.53077 * 321.18915 * 15 14 13 25 25 C 1.47593 * 125.81028 * 180.02562 * 9 7 2 26 26 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.34111 * 85.03901 * 10 9 7 28 28 H 1.09000 * 110.33931 * 322.89697 * 10 9 7 29 29 H 1.08998 * 111.02977 * 82.25352 * 11 10 9 30 30 H 1.09006 * 111.02405 * 206.12329 * 11 10 9 31 31 H 1.09000 * 110.43282 * 239.76129 * 13 12 11 32 32 H 1.08997 * 110.43105 * 2.13978 * 13 12 11 33 33 H 1.09005 * 110.38976 * 142.46298 * 14 13 12 34 34 H 1.08999 * 110.39913 * 264.75279 * 14 13 12 35 35 H 1.07997 * 123.45320 * 359.96023 * 19 18 16 36 36 H 1.08000 * 124.68033 * 179.97438 * 20 19 18 37 37 H 1.09001 * 110.46198 * 279.69756 * 24 15 14 38 38 H 1.08998 * 110.46637 * 157.11404 * 24 15 14 39 39 H 1.08996 * 109.94500 * 58.62099 * 25 9 7 40 40 H 1.09004 * 109.96195 * 297.37894 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1425 -2.5339 0.0017 11 6 -0.4084 -3.9354 0.6117 12 6 0.7788 -4.7409 0.0554 13 6 1.1085 -5.9381 0.9500 14 6 0.9544 -7.1674 0.0233 15 7 1.1458 -6.6317 -1.3458 16 6 1.7948 -7.2113 -2.3750 17 8 2.4163 -8.2423 -2.1992 18 6 1.7519 -6.5975 -3.7106 19 6 0.8713 -5.5058 -4.0585 20 6 1.0039 -5.1114 -5.3184 21 16 2.2243 -6.0677 -6.1406 22 6 2.5423 -6.9951 -4.7463 23 17 3.7124 -8.2745 -4.6590 24 6 0.4624 -5.3140 -1.3291 25 6 1.9305 -3.7344 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5282 -2.4843 -1.0165 28 1 -0.6001 -1.7597 0.6176 29 1 -0.3810 -3.8996 1.7007 30 1 -1.3568 -4.3415 0.2596 31 1 2.1312 -5.8663 1.3201 32 1 0.4067 -5.9961 1.7820 33 1 1.7175 -7.9120 0.2501 34 1 -0.0406 -7.6000 0.1283 35 1 0.1763 -5.0572 -3.3642 36 1 0.4388 -4.3122 -5.7749 37 1 -0.6131 -5.4409 -1.4523 38 1 0.8627 -4.6672 -2.1098 39 1 2.5695 -3.8541 0.8776 40 1 2.5128 -3.8816 -0.9069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041724223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 28.747361 kcal Electronic energy + Delta-G solvation = -25493.780224 eV Core-core repulsion = 21848.027297 eV Total energy + Delta-G solvation = -3645.752927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63256 -39.93750 -38.21337 -37.51838 -37.10033 -34.40244 -32.23639 -30.91112 -30.63692 -29.57223 -27.44650 -26.56010 -25.36459 -23.34438 -22.13636 -21.91084 -20.52173 -20.03699 -19.20902 -18.77631 -17.32883 -17.06634 -16.77417 -16.74422 -15.97886 -15.58766 -15.47896 -15.20989 -14.94391 -14.67585 -14.45460 -14.32412 -13.94109 -13.72645 -13.51012 -13.16874 -13.01559 -12.86775 -12.72973 -12.66337 -12.55310 -12.49362 -12.11315 -12.04283 -12.01647 -11.76423 -11.40466 -11.34773 -11.17124 -10.90092 -10.67639 -10.00100 -9.73426 -9.52048 -8.83253 -7.73802 -5.16771 -0.53778 -0.03896 0.63881 0.86754 1.12129 1.48440 1.49911 1.56472 1.93207 2.17019 2.51521 3.33409 3.39139 3.57574 3.68826 3.70060 3.86712 3.93358 4.14287 4.28902 4.31411 4.37511 4.52076 4.63347 4.72607 4.74499 4.82644 4.87302 4.93972 4.94581 5.03160 5.10086 5.15398 5.19855 5.35352 5.42238 5.49377 5.73934 5.89378 6.37307 6.42891 7.03117 7.16209 7.82270 8.46292 9.26808 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003699 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.063995 B = 7567.106164 C = 8820.693577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.623 5.623 10 C 0.153 3.847 11 C -0.113 4.113 12 C -0.074 4.074 13 C -0.112 4.112 14 C 0.109 3.891 15 N -0.615 5.615 16 C 0.589 3.411 17 O -0.562 6.562 18 C -0.168 4.168 19 C -0.130 4.130 20 C -0.215 4.215 21 S 0.278 5.722 22 C -0.149 4.149 23 Cl 0.003 6.997 24 C 0.109 3.891 25 C 0.150 3.850 26 H 0.247 0.753 27 H -0.004 1.004 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.207 0.793 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 -14.278 -9.249 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.152 4.152 12 C -0.076 4.076 13 C -0.150 4.150 14 C -0.013 4.013 15 N -0.347 5.347 16 C 0.378 3.622 17 O -0.443 6.443 18 C -0.188 4.188 19 C -0.157 4.157 20 C -0.350 4.350 21 S 0.543 5.457 22 C -0.296 4.296 23 Cl 0.032 6.968 24 C -0.013 4.013 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.193 0.807 36 H 0.224 0.776 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -0.860 -14.769 -10.704 18.260 hybrid contribution 0.324 1.035 1.562 1.901 sum -0.536 -13.734 -9.142 16.507 Atomic orbital electron populations 1.70021 1.05805 1.24975 1.58371 1.25462 0.96571 1.00334 1.02689 0.85258 0.77281 0.79450 0.77959 1.20783 1.21652 1.20731 1.19309 0.90691 0.84059 1.42863 0.91168 1.44928 1.02969 1.00291 1.86767 1.21814 0.83439 0.94992 0.96955 1.22853 0.96893 0.95118 1.00300 1.21479 0.96123 0.94538 0.95428 1.22462 1.03054 0.91744 0.97739 1.22538 1.02815 0.96548 0.79364 1.48928 1.53478 1.20476 1.11842 1.17287 0.78125 0.83505 0.83315 1.90795 1.43391 1.25525 1.84610 1.20317 1.02148 1.01778 0.94525 1.21834 1.00761 0.95497 0.97626 1.26035 1.04383 1.06540 0.98057 1.82916 1.32831 1.23449 1.06549 1.25581 1.00731 1.00979 1.02317 1.98387 1.53988 1.46328 1.98083 1.22872 0.98193 0.82935 0.97278 1.21373 0.94327 0.84955 0.96864 0.94306 0.98566 0.91233 0.91217 0.88511 0.91624 0.87474 0.90648 0.88409 0.80745 0.77646 0.87904 0.89678 0.96272 0.97470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.64 10.09 21.65 0.22 -53.42 16 2 C -0.06 -3.16 5.49 84.86 0.47 -2.70 16 3 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.24 -13.23 10.29 84.03 0.86 -12.37 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.62 -30.73 3.42 -692.25 -2.37 -33.09 16 10 C 0.15 6.83 5.81 86.91 0.50 7.33 16 11 C -0.11 -3.54 5.90 31.62 0.19 -3.35 16 12 C -0.07 -2.22 0.79 -51.80 -0.04 -2.26 16 13 C -0.11 -2.67 6.31 31.19 0.20 -2.47 16 14 C 0.11 2.53 7.10 86.63 0.61 3.14 16 15 N -0.61 -17.09 3.33 -812.89 -2.71 -19.79 16 16 C 0.59 18.81 7.84 86.55 0.68 19.49 16 17 O -0.56 -20.75 15.25 -4.22 -0.06 -20.82 16 18 C -0.17 -4.74 5.93 -19.84 -0.12 -4.86 16 19 C -0.13 -3.03 8.66 22.70 0.20 -2.84 16 20 C -0.21 -3.96 11.11 66.65 0.74 -3.22 16 21 S 0.28 5.08 23.02 -56.49 -1.30 3.78 16 22 C -0.15 -3.90 6.87 67.35 0.46 -3.43 16 23 Cl 0.00 0.09 27.27 -2.72 -0.07 0.02 16 24 C 0.11 2.90 4.26 86.05 0.37 3.26 16 25 C 0.15 6.05 6.37 86.19 0.55 6.60 16 26 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.07 3.64 5.88 -2.39 -0.01 3.63 16 29 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 30 H 0.10 2.39 7.65 -2.38 -0.02 2.37 16 31 H 0.06 1.71 7.41 -2.39 -0.02 1.69 16 32 H 0.11 2.06 7.62 -2.39 -0.02 2.05 16 33 H 0.07 1.87 7.84 -2.38 -0.02 1.85 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.18 3.89 4.71 -2.91 -0.01 3.88 16 36 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.10 2.21 7.52 -2.39 -0.02 2.19 16 38 H 0.09 2.53 4.64 -2.39 -0.01 2.52 16 39 H 0.02 0.80 7.48 -2.39 -0.02 0.78 16 40 H 0.01 0.31 7.63 -2.38 -0.02 0.30 16 Total: -1.00 -68.99 342.73 2.48 -66.51 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.08 Total: 7.77 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.67 Total: 2.32 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -4.85 Total: -106.31 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.30 Total: 3.78 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.07 Total: 0.02 kcal Total: -68.99 2.48 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041724223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.254 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds