Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99662 * 2 1 4 4 H 1.48500 * 109.46970 * 239.99701 * 3 2 1 5 5 H 1.48493 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46792 * 120.00110 * 3 2 1 7 7 C 1.38814 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99695 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99663 * 359.97438 * 7 2 1 10 10 C 1.48149 * 126.40243 * 0.02562 * 9 7 2 11 11 C 1.55295 * 107.21539 * 174.90137 * 10 9 7 12 12 C 1.54021 * 101.66959 * 337.77055 * 11 10 9 13 13 H 1.09000 * 111.54759 * 280.95372 * 12 11 10 14 14 C 1.51976 * 115.05463 * 153.34334 * 12 11 10 15 15 C 1.53883 * 107.28831 * 184.38496 * 14 12 11 16 16 N 1.46588 * 110.71313 * 51.81010 * 15 14 12 17 17 C 1.34777 * 119.75728 * 132.23938 * 16 15 14 18 18 O 1.21650 * 120.00360 * 175.88694 * 17 16 15 19 19 C 1.47045 * 119.99359 * 355.88913 * 17 16 15 20 20 C 1.44503 * 123.49451 * 51.15568 * 19 17 16 21 21 C 1.32697 * 113.09770 * 179.76111 * 20 19 17 22 22 S 1.75492 * 110.62986 * 0.48667 * 21 20 19 23 23 C 1.36224 * 123.49023 * 231.44642 * 19 17 16 24 24 Cl 1.73600 * 124.60570 * 0.02562 * 23 19 17 25 25 C 1.47809 * 120.49823 * 312.26384 * 16 15 14 26 26 C 1.45511 * 126.39319 * 180.02562 * 9 7 2 27 27 H 1.09002 * 109.57108 * 94.12715 * 26 9 7 28 28 H 0.97002 * 120.00435 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.92301 * 294.35439 * 10 9 7 30 30 H 1.09010 * 109.91682 * 55.45366 * 10 9 7 31 31 H 1.09001 * 110.96150 * 95.78151 * 11 10 9 32 32 H 1.09000 * 110.95944 * 219.52320 * 11 10 9 33 33 H 1.09001 * 109.89136 * 64.94083 * 14 12 11 34 34 H 1.08997 * 109.95993 * 303.87109 * 14 12 11 35 35 H 1.08998 * 109.23151 * 291.49201 * 15 14 12 36 36 H 1.08998 * 109.19583 * 172.10405 * 15 14 12 37 37 H 1.08005 * 123.45145 * 359.97438 * 20 19 17 38 38 H 1.08005 * 124.67867 * 180.19050 * 21 20 19 39 39 H 1.08998 * 110.06051 * 292.03452 * 25 16 15 40 40 H 1.08998 * 110.06549 * 170.46793 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5532 -0.0005 11 6 -0.4387 -4.0727 -0.1324 12 6 0.8683 -4.5875 -0.7639 13 1 0.8999 -4.3905 -1.8355 14 6 1.1978 -6.0411 -0.4669 15 6 2.5775 -6.3324 -1.0828 16 7 3.5604 -5.3356 -0.6478 17 6 4.7635 -5.7371 -0.1920 18 8 5.6095 -4.9130 0.0996 19 6 5.0534 -7.1714 -0.0470 20 6 4.8434 -8.1378 -1.1006 21 6 5.1784 -9.3726 -0.7487 22 16 5.7580 -9.4078 0.9074 23 6 5.5425 -7.7276 1.0962 24 17 5.8975 -6.8452 2.5485 25 6 3.2418 -3.8934 -0.7049 26 6 1.9083 -3.7214 -0.0005 27 1 1.9867 -4.0855 1.0238 28 1 -0.4851 0.8400 0.0004 29 1 -0.5629 -2.1746 0.9331 30 1 -0.5805 -2.0170 -0.8447 31 1 -0.6027 -4.5246 0.8459 32 1 -1.2896 -4.2506 -0.7900 33 1 0.4465 -6.6908 -0.9159 34 1 1.2310 -6.2024 0.6105 35 1 2.4980 -6.3076 -2.1696 36 1 2.9080 -7.3227 -0.7696 37 1 4.4567 -7.8809 -2.0758 38 1 5.1004 -10.2373 -1.3911 39 1 3.1613 -3.5690 -1.7423 40 1 4.0129 -3.3194 -0.1910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042253337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = 11.660947 kcal Electronic energy + Delta-G solvation = -25527.637470 eV Core-core repulsion = 21881.143620 eV Total energy + Delta-G solvation = -3646.493850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66790 -39.93247 -38.24107 -37.54457 -36.82367 -34.65810 -32.90374 -31.32176 -30.43753 -30.18884 -26.59068 -26.54501 -24.67001 -23.59011 -22.08012 -21.81454 -21.02988 -20.03740 -19.23723 -18.58947 -17.65585 -17.31119 -16.86191 -16.29167 -15.90869 -15.75127 -15.47107 -15.03824 -14.89697 -14.77613 -14.52160 -14.37900 -14.16770 -13.80946 -13.63736 -13.55932 -13.15430 -13.07932 -12.77115 -12.65729 -12.47651 -12.15477 -12.13509 -12.04100 -11.98062 -11.78198 -11.54671 -11.33661 -11.05279 -11.02366 -10.74054 -9.90296 -9.72389 -9.44324 -8.92828 -7.88101 -5.23118 -0.40506 0.02482 0.69193 1.02894 1.17365 1.41859 1.44559 1.50907 1.70376 2.03620 2.47699 3.29821 3.41668 3.55018 3.80147 3.92451 3.95300 3.99669 4.17741 4.26034 4.29378 4.33506 4.53368 4.61123 4.69224 4.75266 4.81348 4.89108 4.91754 4.97991 5.10153 5.12007 5.14525 5.23105 5.36572 5.48193 5.58617 5.65102 5.77291 6.17478 6.32465 7.02348 7.06501 7.74644 8.41521 9.22484 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.003405 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.079104 B = 8222.105001 C = 9101.504986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.111 4.111 15 C 0.097 3.903 16 N -0.594 5.594 17 C 0.566 3.434 18 O -0.576 6.576 19 C -0.153 4.153 20 C -0.113 4.113 21 C -0.197 4.197 22 S 0.271 5.729 23 C -0.168 4.168 24 Cl -0.021 7.021 25 C 0.132 3.868 26 C 0.148 3.852 27 H 0.002 0.998 28 H 0.248 0.752 29 H -0.003 1.003 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.180 0.820 38 H 0.221 0.779 39 H 0.071 0.929 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -27.891 -3.685 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.115 4.115 13 H 0.099 0.901 14 C -0.149 4.149 15 C -0.024 4.024 16 N -0.326 5.326 17 C 0.354 3.646 18 O -0.456 6.456 19 C -0.173 4.173 20 C -0.141 4.141 21 C -0.332 4.332 22 S 0.535 5.465 23 C -0.314 4.314 24 Cl 0.008 6.992 25 C 0.008 3.992 26 C 0.040 3.960 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.198 0.802 38 H 0.238 0.762 39 H 0.089 0.911 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.177 -28.297 -2.457 29.296 hybrid contribution -0.070 3.392 -0.203 3.399 sum 7.107 -24.905 -2.660 26.035 Atomic orbital electron populations 1.70135 1.06018 1.25350 1.58054 1.25533 0.96561 1.00610 1.02543 0.85275 0.77323 0.79406 0.78109 1.20210 1.21443 1.21018 1.19261 0.90549 0.83855 1.43251 0.90920 1.44426 1.02603 1.00254 1.86506 1.21365 0.82781 0.92651 0.97628 1.22647 0.97689 0.94726 1.00854 1.22268 0.94444 0.95350 0.99427 0.90149 1.21812 0.96879 0.94791 1.01420 1.22313 0.87713 0.91722 1.00605 1.48220 1.14526 1.07003 1.62853 1.18161 0.81952 0.88156 0.76369 1.90805 1.47529 1.55494 1.51800 1.20312 1.07538 0.94131 0.95358 1.21235 1.02976 0.90388 0.99520 1.26059 1.05555 1.02435 0.99163 1.83049 1.60588 0.93747 1.09078 1.25549 1.10323 1.02125 0.93383 1.98405 1.93079 1.75195 1.32515 1.21307 0.97029 0.80383 1.00490 1.21107 0.93205 0.86299 0.95366 0.98028 0.94291 0.98446 0.95686 0.91423 0.89226 0.86445 0.92207 0.88823 0.86864 0.80247 0.76235 0.91112 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.06 10.43 21.65 0.23 -57.84 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -14.08 9.88 84.03 0.83 -13.25 16 8 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 9 N -0.61 -32.48 3.35 -669.29 -2.24 -34.72 16 10 C 0.18 8.98 5.44 86.85 0.47 9.45 16 11 C -0.12 -4.22 6.58 31.73 0.21 -4.01 16 12 C -0.10 -3.03 2.61 -9.97 -0.03 -3.05 16 13 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 14 C -0.11 -2.40 5.73 30.55 0.17 -2.23 16 15 C 0.10 1.96 5.45 86.66 0.47 2.43 16 16 N -0.59 -18.45 3.01 -823.11 -2.48 -20.93 16 17 C 0.57 18.98 7.04 86.55 0.61 19.59 16 18 O -0.58 -24.90 16.02 -4.19 -0.07 -24.96 16 19 C -0.15 -3.69 4.89 -19.84 -0.10 -3.79 16 20 C -0.11 -1.54 7.97 22.70 0.18 -1.36 16 21 C -0.20 -1.60 11.11 66.65 0.74 -0.86 16 22 S 0.27 3.39 23.02 -56.49 -1.30 2.09 16 23 C -0.17 -3.88 6.87 67.35 0.46 -3.41 16 24 Cl -0.02 -0.58 28.42 -2.72 -0.08 -0.65 16 25 C 0.13 5.26 5.67 85.73 0.49 5.74 16 26 C 0.15 6.30 2.77 45.60 0.13 6.43 16 27 H 0.00 0.11 7.90 -2.39 -0.02 0.09 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.00 -0.15 7.77 -2.38 -0.02 -0.17 16 30 H 0.02 1.38 7.20 -2.38 -0.02 1.36 16 31 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 32 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.44 7.97 -2.39 -0.02 1.42 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.71 4.73 -2.39 -0.01 1.70 16 37 H 0.18 1.64 7.53 -2.91 -0.02 1.61 16 38 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 39 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.05 2.56 6.79 -2.39 -0.02 2.54 16 Total: -1.00 -79.75 345.10 2.26 -77.49 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.07 Total: 0.95 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.11 Total: 8.66 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.49 Total: -113.49 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.30 Total: 2.09 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.65 kcal Total: -79.75 2.26 -77.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042253337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.152 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds