Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32697 * 123.44903 * 2 1 4 4 S 1.75493 * 110.62906 * 179.97438 * 3 2 1 5 5 C 1.70455 * 92.46429 * 359.97438 * 4 3 2 6 6 Cl 1.73597 * 124.60183 * 180.02562 * 5 4 3 7 7 C 1.36223 * 110.78717 * 359.72405 * 5 4 3 8 8 C 1.47050 * 123.48844 * 180.28694 * 7 5 4 9 9 O 1.21653 * 119.99908 * 270.20630 * 8 7 5 10 10 N 1.34770 * 119.99882 * 90.20705 * 8 7 5 11 11 C 1.46747 * 125.33287 * 359.69368 * 10 8 7 12 12 C 1.54092 * 106.63604 * 161.58357 * 11 10 8 13 13 H 1.09006 * 113.49494 * 151.36811 * 12 11 10 14 14 C 1.53964 * 109.44845 * 278.63986 * 12 11 10 15 15 N 1.46778 * 106.62861 * 138.17851 * 14 12 11 16 16 C 1.36939 * 125.33526 * 161.50615 * 15 14 12 17 17 H 1.07995 * 120.00107 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99265 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00671 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99726 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46966 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47130 * 119.99978 * 20 18 16 23 23 H 1.48498 * 109.47262 * 240.00302 * 20 18 16 24 24 C 1.48239 * 109.51539 * 341.52538 * 15 14 12 25 25 C 1.53729 * 107.13579 * 0.47600 * 24 15 14 26 26 H 1.09003 * 112.55930 * 140.21082 * 25 24 15 27 27 C 1.46639 * 125.32920 * 179.97438 * 10 8 7 28 28 H 1.09001 * 109.46953 * 90.02498 * 1 2 3 29 29 H 1.09000 * 109.47318 * 210.02096 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.02727 * 1 2 3 31 31 H 1.07995 * 124.68387 * 359.96301 * 3 2 1 32 32 H 1.09004 * 110.00377 * 281.01333 * 11 10 8 33 33 H 1.09002 * 110.00930 * 42.37688 * 11 10 8 34 34 H 1.09006 * 110.02670 * 257.47159 * 14 12 11 35 35 H 1.09001 * 110.02718 * 18.88652 * 14 12 11 36 36 H 0.97001 * 120.00491 * 179.97438 * 19 18 16 37 37 H 1.08996 * 110.29846 * 241.03734 * 24 15 14 38 38 H 1.09002 * 110.03118 * 119.76538 * 24 15 14 39 39 H 1.08997 * 109.76283 * 300.44048 * 27 10 8 40 40 H 1.09003 * 109.75967 * 61.15809 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2385 1.1072 0.0000 4 16 3.9497 0.7178 0.0007 5 6 3.6433 -0.9590 0.0018 6 17 4.8717 -2.1856 0.0036 7 6 2.3036 -1.2056 0.0077 8 6 1.7277 -2.5586 0.0162 9 8 1.4892 -3.1248 -1.0338 10 7 1.4640 -3.1715 1.1872 11 6 1.7101 -2.6022 2.5172 12 6 0.8534 -3.4124 3.5092 13 1 1.2742 -3.4537 4.5139 14 6 -0.5940 -2.8879 3.4839 15 7 -1.4684 -4.0663 3.5187 16 6 -2.7930 -4.0596 3.8659 17 1 -3.2736 -3.1334 4.1442 18 6 -3.5179 -5.2434 3.8602 19 7 -2.9320 -6.3723 3.5215 20 14 -5.3246 -5.2346 4.3345 21 1 -5.7411 -3.8496 4.6715 22 1 -6.1377 -5.7322 3.1960 23 1 -5.5315 -6.1147 5.5126 24 6 -0.6967 -5.2676 3.1201 25 6 0.7417 -4.8072 2.8330 26 1 1.4875 -5.5134 3.1980 27 6 0.8918 -4.5138 1.3318 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 1.8362 2.1094 -0.0006 32 1 2.7661 -2.6927 2.7720 33 1 1.4101 -1.5545 2.5358 34 1 -0.7788 -2.2600 4.3555 35 1 -0.7692 -2.3199 2.5702 36 1 -3.4384 -7.1996 3.5179 37 1 -1.1271 -5.7131 2.2233 38 1 -0.6957 -5.9966 3.9304 39 1 -0.0848 -4.5521 0.8493 40 1 1.5564 -5.2487 0.8775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049190905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = 24.054962 kcal Electronic energy + Delta-G solvation = -25578.889470 eV Core-core repulsion = 21932.933065 eV Total energy + Delta-G solvation = -3645.956405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.42489 -38.70417 -37.31923 -36.86048 -34.91174 -32.25673 -31.16582 -30.26477 -29.62672 -27.98204 -25.84669 -25.50216 -24.13785 -22.63307 -20.58927 -20.18739 -19.38613 -18.52292 -18.25309 -17.18722 -16.61994 -15.93553 -15.55461 -14.74373 -14.68260 -14.26593 -14.10404 -13.89094 -13.66916 -13.28377 -13.18405 -13.04462 -12.90609 -12.55121 -12.22938 -12.04760 -11.78764 -11.71241 -11.50408 -11.45715 -11.41206 -11.09729 -10.91330 -10.83455 -10.39617 -10.11894 -10.02383 -9.94173 -9.83302 -9.66069 -8.98621 -8.64398 -8.61934 -8.40156 -6.85527 -5.73796 -3.06965 0.47636 0.79354 1.46523 1.89901 1.98391 2.62797 3.22322 3.39060 3.44621 3.47059 4.45112 4.47344 4.66205 4.77894 4.81748 5.05356 5.22594 5.25663 5.35995 5.46176 5.51409 5.54140 5.61601 5.63569 5.72444 5.74590 5.92811 5.94874 6.11601 6.15491 6.25338 6.32475 6.50726 6.59659 6.66768 6.82026 7.50435 7.54550 7.64807 7.78557 8.21320 8.22006 9.18347 9.80157 10.44257 11.38238 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.003290 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.819126 B = 8508.501713 C = 9139.128098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.058 4.058 3 C -0.228 4.228 4 S 0.212 5.788 5 C -0.152 4.152 6 Cl -0.002 7.002 7 C -0.118 4.118 8 C 0.593 3.407 9 O -0.528 6.528 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.108 4.108 13 H 0.099 0.901 14 C 0.147 3.853 15 N -0.604 5.604 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.188 3.812 25 C -0.123 4.123 26 H 0.088 0.912 27 C 0.119 3.881 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.017 0.983 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.791 14.490 -4.476 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.363 4.363 4 S 0.478 5.522 5 C -0.298 4.298 6 Cl 0.027 6.973 7 C -0.138 4.138 8 C 0.379 3.621 9 O -0.405 6.405 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.128 4.128 13 H 0.118 0.882 14 C 0.021 3.979 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.064 3.936 25 C -0.143 4.143 26 H 0.106 0.894 27 C -0.003 4.003 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.194 0.806 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.952 14.827 -5.090 23.089 hybrid contribution -2.015 -1.104 0.254 2.311 sum 14.937 13.723 -4.836 20.852 Atomic orbital electron populations 1.20589 0.88151 1.03857 1.03304 1.19709 0.97460 0.89296 1.00454 1.25326 0.95836 1.02860 1.12306 1.83028 1.05438 0.92684 1.71077 1.24998 0.93218 0.97840 1.13697 1.98394 1.50608 1.51450 1.96851 1.20176 0.91173 0.95319 1.07099 1.16975 0.78250 0.84008 0.82915 1.90836 1.52919 1.65857 1.30898 1.48158 1.61437 1.17857 1.05263 1.21976 0.99135 0.98021 0.82051 1.22947 0.96859 0.95077 0.97887 0.88247 1.21205 0.87687 0.91046 0.97953 1.44602 1.06903 1.01790 1.79802 1.19089 0.83928 0.94108 1.38506 0.90419 1.24778 0.98334 0.95474 1.01747 1.69942 1.34831 0.98005 1.54182 0.86054 0.84753 0.77306 0.77701 1.20546 1.21761 1.21762 1.21323 0.83433 0.88980 0.99881 1.23148 1.01903 0.96668 0.92566 0.89364 1.22032 0.98948 0.82035 0.97276 0.90308 0.90608 0.90471 0.80599 0.91895 0.90966 0.94723 0.96589 0.93741 0.93016 0.93161 0.90372 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.96 36.01 0.36 -0.77 16 2 C -0.06 -0.67 6.01 -104.04 -0.62 -1.30 16 3 C -0.23 -2.03 10.90 28.85 0.31 -1.71 16 4 S 0.21 1.86 23.02 -107.50 -2.47 -0.61 16 5 C -0.15 -1.86 6.87 30.01 0.21 -1.65 16 6 Cl 0.00 -0.02 28.80 -51.86 -1.49 -1.51 16 7 C -0.12 -1.65 4.67 -104.59 -0.49 -2.14 16 8 C 0.59 10.15 6.30 -12.69 -0.08 10.07 16 9 O -0.53 -10.94 17.42 5.23 0.09 -10.84 16 10 N -0.59 -9.71 3.30 -173.68 -0.57 -10.28 16 11 C 0.11 1.55 5.75 -3.34 -0.02 1.53 16 12 C -0.11 -1.72 4.17 -88.27 -0.37 -2.08 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.15 2.88 6.49 -3.39 -0.02 2.86 16 15 N -0.60 -14.84 3.42 -170.56 -0.58 -15.43 16 16 C -0.23 -6.21 10.25 -15.06 -0.15 -6.36 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.53 10.25 55.49 0.57 -25.96 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.19 4.35 4.84 -2.71 -0.01 4.34 16 25 C -0.12 -2.16 3.97 -88.60 -0.35 -2.52 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 C 0.12 2.11 6.21 -3.61 -0.02 2.09 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 30 H 0.08 0.68 8.13 -51.93 -0.42 0.25 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.94 7.63 -51.93 -0.40 0.55 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.05 1.34 6.76 -51.93 -0.35 0.99 16 38 H 0.05 1.29 7.41 -51.93 -0.38 0.90 16 39 H 0.08 1.61 7.30 -51.93 -0.38 1.23 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -31.92 354.64 -10.74 -42.67 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.24 Total: -2.28 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.36 Total: 2.07 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.59 Total: -51.67 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.47 Total: -0.61 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.49 Total: -1.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.92 -10.74 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049190905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.721 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds