Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33769 * 122.45518 * 2 1 4 4 S 1.70599 * 110.99875 * 180.26797 * 3 2 1 5 5 C 1.75831 * 91.58753 * 359.68321 * 4 3 2 6 6 C 1.46447 * 125.46163 * 180.11362 * 5 4 3 7 7 O 1.21724 * 119.99533 * 180.23251 * 6 5 4 8 8 N 1.34769 * 119.99944 * 0.22623 * 6 5 4 9 9 C 1.47392 * 135.85522 * 359.64255 * 8 6 5 10 10 C 1.52078 * 87.41019 * 154.38051 * 9 8 6 11 11 C 1.47399 * 135.85215 * 179.97438 * 8 6 5 12 12 C 1.53515 * 117.21050 * 267.27235 * 10 9 8 13 13 C 1.54623 * 102.70434 * 262.93282 * 12 10 9 14 14 N 1.47145 * 107.38037 * 339.38430 * 13 12 10 15 15 C 1.36937 * 125.58382 * 179.06093 * 14 13 12 16 16 H 1.08002 * 120.00388 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99697 * 0.03183 * 15 14 13 18 18 N 1.31617 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99750 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47018 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47109 * 120.00032 * 19 17 15 22 22 H 1.48496 * 109.46791 * 239.99998 * 19 17 15 23 23 C 1.47761 * 108.83697 * 359.09182 * 14 13 12 24 24 C 1.36786 * 109.07231 * 0.31235 * 5 4 3 25 25 Cl 1.73608 * 123.37665 * 179.80079 * 24 5 4 26 26 H 1.08995 * 109.47171 * 89.97269 * 1 2 3 27 27 H 1.08993 * 109.47233 * 209.98067 * 1 2 3 28 28 H 1.09009 * 109.46628 * 329.97516 * 1 2 3 29 29 H 1.08002 * 124.49701 * 359.97438 * 3 2 1 30 30 H 1.09004 * 113.53806 * 268.98958 * 9 8 6 31 31 H 1.08999 * 113.54336 * 39.66947 * 9 8 6 32 32 H 1.09003 * 113.54155 * 320.33491 * 11 8 6 33 33 H 1.09000 * 113.54184 * 90.93793 * 11 8 6 34 34 H 1.08995 * 110.76481 * 21.24130 * 12 10 9 35 35 H 1.09004 * 110.75931 * 144.63178 * 12 10 9 36 36 H 1.09003 * 109.86508 * 98.83761 * 13 12 10 37 37 H 1.09004 * 109.86593 * 219.93795 * 13 12 10 38 38 H 0.97001 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.40155 * 263.49796 * 23 14 13 40 40 H 1.09005 * 110.40384 * 141.07945 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2249 1.1288 0.0000 4 16 3.8969 0.7899 -0.0074 5 6 3.5956 -0.9424 -0.0009 6 6 4.6251 -1.9838 -0.0007 7 8 4.3032 -3.1577 -0.0002 8 7 5.9289 -1.6425 -0.0012 9 6 6.6921 -0.3816 -0.0084 10 6 7.8276 -1.1454 0.6549 11 6 7.2121 -2.3678 -0.0008 12 6 7.8815 -1.1305 2.1890 13 6 8.8978 -0.0028 2.4826 14 7 9.7026 0.1913 1.2661 15 6 10.7028 1.1137 1.1111 16 1 11.2372 1.1786 0.1748 17 6 11.0298 1.9653 2.1574 18 7 10.3783 1.8865 3.2983 19 14 12.3946 3.2232 1.9462 20 1 12.9663 3.1086 0.5805 21 1 11.8437 4.5885 2.1398 22 1 13.4591 2.9719 2.9506 23 6 9.2545 -0.7718 0.2390 24 6 2.2453 -1.1612 -0.0005 25 17 1.5344 -2.7450 0.0003 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3633 0.8899 0.5143 29 1 1.8021 2.1226 -0.0004 30 1 6.9338 -0.0248 -1.0096 31 1 6.2587 0.3933 0.6239 32 1 7.2127 -3.2512 0.6379 33 1 7.5990 -2.5687 -0.9998 34 1 6.9046 -0.8889 2.6077 35 1 8.2421 -2.0851 2.5723 36 1 8.3687 0.9182 2.7275 37 1 9.5436 -0.2927 3.3116 38 1 10.6071 2.4813 4.0296 39 1 9.8942 -1.6543 0.2406 40 1 9.2533 -0.3041 -0.7456 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072773477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = 63.512345 kcal Electronic energy + Delta-G solvation = -24805.789740 eV Core-core repulsion = 21161.544336 eV Total energy + Delta-G solvation = -3644.245405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.73849 -39.12594 -37.81929 -36.26850 -35.69658 -32.31610 -31.40732 -29.61125 -28.81835 -27.98199 -26.16861 -26.03687 -24.32930 -23.24150 -20.37978 -20.01890 -19.41992 -18.51327 -17.92580 -16.80399 -16.40929 -16.12355 -15.70363 -14.97720 -14.64187 -14.59064 -14.27351 -13.91188 -13.83981 -13.62414 -13.07137 -12.93078 -12.60603 -12.44297 -12.36115 -12.28241 -12.03771 -11.88779 -11.54995 -11.35334 -11.01922 -10.96352 -10.91161 -10.66394 -10.47557 -10.23749 -10.11140 -9.90070 -9.74859 -9.64355 -9.06261 -8.64430 -8.63802 -8.53851 -6.88458 -5.75502 -3.09351 0.19822 1.02385 1.55728 1.95056 2.33805 2.75060 3.11419 3.36915 3.42854 3.45123 4.24701 4.43642 4.56836 4.66479 4.75479 4.90256 5.08701 5.16206 5.24410 5.33405 5.44790 5.47551 5.48690 5.56980 5.61536 5.74153 5.75108 5.80463 5.89175 5.94526 6.10754 6.18725 6.41266 6.47073 6.60636 6.65474 7.51687 7.57065 7.70261 7.78445 8.11089 8.20192 9.17153 9.77163 10.42421 11.36020 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.002961 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.451641 B = 9454.100454 C =10353.076046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C -0.243 4.243 4 S 0.267 5.733 5 C -0.256 4.256 6 C 0.612 3.388 7 O -0.520 6.520 8 N -0.641 5.641 9 C 0.111 3.889 10 C -0.102 4.102 11 C 0.125 3.875 12 C -0.118 4.118 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.154 3.846 24 C 0.016 3.984 25 Cl -0.018 7.018 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.535 -2.956 -7.425 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.381 4.381 4 S 0.536 5.464 5 C -0.378 4.378 6 C 0.401 3.599 7 O -0.398 6.398 8 N -0.376 5.376 9 C -0.012 4.012 10 C -0.104 4.104 11 C 0.003 3.997 12 C -0.156 4.156 13 C 0.055 3.945 14 N -0.331 5.331 15 C -0.356 4.356 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.027 3.973 24 C -0.027 4.027 25 Cl 0.011 6.989 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.193 0.807 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.575 -2.687 -7.301 18.310 hybrid contribution -0.742 -0.079 -0.030 0.746 sum -17.316 -2.766 -7.331 19.007 Atomic orbital electron populations 1.20553 0.88760 1.03320 1.02783 1.18415 0.98307 0.90091 1.05799 1.25270 1.00269 1.03171 1.09343 1.83654 1.01642 0.95497 1.65576 1.24465 0.96347 0.98883 1.18098 1.16175 0.79660 0.86982 0.77061 1.90872 1.80413 1.17762 1.50706 1.49655 1.03421 1.11981 1.72566 1.23053 0.89130 0.87814 1.01180 1.22167 0.95880 0.94541 0.97786 1.22786 0.79024 0.96990 1.00938 1.22489 1.00556 1.01198 0.91382 1.21230 0.90376 0.93602 0.89321 1.44551 1.40064 1.38691 1.09820 1.19086 1.08809 1.09080 0.98619 0.90320 1.24796 0.99736 0.99787 0.96061 1.69967 1.42798 1.40530 1.03530 0.86061 0.81370 0.81117 0.77304 1.20507 1.21789 1.21797 1.21143 0.89520 0.93323 0.93323 1.20143 0.90732 0.88589 1.03238 1.98384 1.82698 1.21599 1.96207 0.90843 0.90957 0.91049 0.80740 0.88930 0.90028 0.90085 0.89461 0.92082 0.91605 0.93457 0.93722 0.93788 0.95383 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.86 36.01 0.35 -0.39 16 2 C -0.11 -1.19 5.78 -106.42 -0.62 -1.81 16 3 C -0.24 -2.29 10.67 29.16 0.31 -1.98 16 4 S 0.27 2.95 19.89 -107.50 -2.14 0.81 16 5 C -0.26 -3.58 6.45 -36.80 -0.24 -3.82 16 6 C 0.61 9.88 8.03 -12.96 -0.10 9.77 16 7 O -0.52 -9.70 15.86 5.17 0.08 -9.61 16 8 N -0.64 -9.49 3.70 -187.34 -0.69 -10.18 16 9 C 0.11 1.57 6.55 -7.32 -0.05 1.52 16 10 C -0.10 -1.60 1.06 -155.23 -0.16 -1.76 16 11 C 0.12 1.73 8.02 -7.48 -0.06 1.67 16 12 C -0.12 -2.08 6.40 -25.61 -0.16 -2.24 16 13 C 0.18 4.08 5.39 -2.84 -0.02 4.06 16 14 N -0.60 -14.29 3.41 -170.53 -0.58 -14.87 16 15 C -0.23 -5.98 10.28 -15.06 -0.15 -6.14 16 16 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -25.97 10.30 55.49 0.57 -25.40 16 19 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.15 2.82 6.70 -3.22 -0.02 2.80 16 24 C 0.02 0.21 6.38 -40.34 -0.26 -0.05 16 25 Cl -0.02 -0.24 26.18 -51.86 -1.36 -1.60 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.58 7.40 -51.93 -0.38 0.19 16 28 H 0.07 0.44 8.12 -51.92 -0.42 0.02 16 29 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 31 H 0.08 1.17 6.44 -51.93 -0.33 0.84 16 32 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 37 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -31.07 353.14 -10.34 -41.41 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.25 Total: -3.49 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.27 Total: 1.34 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.70 Total: -50.45 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.14 Total: 0.81 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.36 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.07 -10.34 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072773477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.925 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds