Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33769 * 122.45518 * 2 1 4 4 S 1.70599 * 110.99875 * 180.26797 * 3 2 1 5 5 C 1.75831 * 91.58753 * 359.68321 * 4 3 2 6 6 C 1.46447 * 125.46163 * 180.11362 * 5 4 3 7 7 O 1.21724 * 119.99533 * 180.23251 * 6 5 4 8 8 N 1.34769 * 119.99944 * 0.22623 * 6 5 4 9 9 C 1.47392 * 135.85522 * 359.64255 * 8 6 5 10 10 C 1.52078 * 87.41019 * 154.38051 * 9 8 6 11 11 C 1.47399 * 135.85215 * 179.97438 * 8 6 5 12 12 C 1.53515 * 117.21050 * 267.27235 * 10 9 8 13 13 C 1.54623 * 102.70434 * 262.93282 * 12 10 9 14 14 N 1.47145 * 107.38037 * 339.38430 * 13 12 10 15 15 C 1.36937 * 125.58382 * 179.06093 * 14 13 12 16 16 H 1.08002 * 120.00388 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99697 * 0.03183 * 15 14 13 18 18 N 1.31617 * 120.00168 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99750 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47018 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47109 * 120.00032 * 19 17 15 22 22 H 1.48496 * 109.46791 * 239.99998 * 19 17 15 23 23 C 1.47761 * 108.83697 * 359.09182 * 14 13 12 24 24 C 1.36786 * 109.07231 * 0.31235 * 5 4 3 25 25 Cl 1.73608 * 123.37665 * 179.80079 * 24 5 4 26 26 H 1.08995 * 109.47171 * 89.97269 * 1 2 3 27 27 H 1.08993 * 109.47233 * 209.98067 * 1 2 3 28 28 H 1.09009 * 109.46628 * 329.97516 * 1 2 3 29 29 H 1.08002 * 124.49701 * 359.97438 * 3 2 1 30 30 H 1.09004 * 113.53806 * 268.98958 * 9 8 6 31 31 H 1.08999 * 113.54336 * 39.66947 * 9 8 6 32 32 H 1.09003 * 113.54155 * 320.33491 * 11 8 6 33 33 H 1.09000 * 113.54184 * 90.93793 * 11 8 6 34 34 H 1.08995 * 110.76481 * 21.24130 * 12 10 9 35 35 H 1.09004 * 110.75931 * 144.63178 * 12 10 9 36 36 H 1.09003 * 109.86508 * 98.83761 * 13 12 10 37 37 H 1.09004 * 109.86593 * 219.93795 * 13 12 10 38 38 H 0.97001 * 119.99967 * 179.97438 * 18 17 15 39 39 H 1.09002 * 110.40155 * 263.49796 * 23 14 13 40 40 H 1.09005 * 110.40384 * 141.07945 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2249 1.1288 0.0000 4 16 3.8969 0.7899 -0.0074 5 6 3.5956 -0.9424 -0.0009 6 6 4.6251 -1.9838 -0.0007 7 8 4.3032 -3.1577 -0.0002 8 7 5.9289 -1.6425 -0.0012 9 6 6.6921 -0.3816 -0.0084 10 6 7.8276 -1.1454 0.6549 11 6 7.2121 -2.3678 -0.0008 12 6 7.8815 -1.1305 2.1890 13 6 8.8978 -0.0028 2.4826 14 7 9.7026 0.1913 1.2661 15 6 10.7028 1.1137 1.1111 16 1 11.2372 1.1786 0.1748 17 6 11.0298 1.9653 2.1574 18 7 10.3783 1.8865 3.2983 19 14 12.3946 3.2232 1.9462 20 1 12.9663 3.1086 0.5805 21 1 11.8437 4.5885 2.1398 22 1 13.4591 2.9719 2.9506 23 6 9.2545 -0.7718 0.2390 24 6 2.2453 -1.1612 -0.0005 25 17 1.5344 -2.7450 0.0003 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8901 0.5135 28 1 -0.3633 0.8899 0.5143 29 1 1.8021 2.1226 -0.0004 30 1 6.9338 -0.0248 -1.0096 31 1 6.2587 0.3933 0.6239 32 1 7.2127 -3.2512 0.6379 33 1 7.5990 -2.5687 -0.9998 34 1 6.9046 -0.8889 2.6077 35 1 8.2421 -2.0851 2.5723 36 1 8.3687 0.9182 2.7275 37 1 9.5436 -0.2927 3.3116 38 1 10.6071 2.4813 4.0296 39 1 9.8942 -1.6543 0.2406 40 1 9.2533 -0.3041 -0.7456 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072773477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = 45.780648 kcal Electronic energy + Delta-G solvation = -24806.558645 eV Core-core repulsion = 21161.544336 eV Total energy + Delta-G solvation = -3645.014309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98073 -40.15006 -38.96482 -37.28837 -37.22541 -34.09978 -32.41918 -31.15257 -30.26432 -28.77898 -27.57847 -27.25716 -25.87023 -24.45112 -22.12358 -21.12928 -20.29713 -19.84630 -18.96783 -18.59048 -17.49158 -17.23497 -16.89188 -16.70921 -16.11926 -15.60616 -15.54616 -15.31642 -14.76521 -14.69538 -14.25077 -14.13340 -13.80030 -13.72002 -13.62793 -13.35623 -13.31383 -12.96720 -12.86244 -12.78216 -12.47118 -12.40292 -12.08799 -11.95727 -11.86699 -11.85905 -11.81851 -11.64109 -11.19323 -10.97230 -10.65221 -10.05585 -9.68236 -9.43227 -8.82506 -7.78503 -5.13024 -0.72985 0.11206 0.73695 1.09347 1.38433 1.51183 1.52124 1.61703 1.63282 1.97591 2.54610 3.15719 3.32902 3.45608 3.57037 3.79616 3.88225 3.96410 4.04176 4.20962 4.33058 4.42779 4.46671 4.51308 4.62996 4.67055 4.72014 4.77041 4.80501 4.85175 4.94368 5.03510 5.16435 5.17148 5.21207 5.29227 5.54138 5.70112 5.82784 6.25088 6.53334 6.93830 7.16518 7.83838 8.48022 9.32042 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.002961 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.451641 B = 9454.100454 C =10353.076046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.125 4.125 3 C -0.222 4.222 4 S 0.283 5.717 5 C -0.293 4.293 6 C 0.609 3.391 7 O -0.555 6.555 8 N -0.642 5.642 9 C 0.116 3.884 10 C -0.096 4.096 11 C 0.131 3.869 12 C -0.104 4.104 13 C 0.191 3.809 14 N -0.625 5.625 15 C -0.231 4.231 16 H 0.087 0.913 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.294 1.294 22 H -0.299 1.299 23 C 0.152 3.848 24 C 0.011 3.989 25 Cl -0.029 7.029 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.210 0.790 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.015 0.985 37 H 0.004 0.996 38 H 0.244 0.756 39 H 0.037 0.963 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.492 -2.102 -9.220 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C -0.360 4.360 4 S 0.552 5.448 5 C -0.415 4.415 6 C 0.399 3.601 7 O -0.436 6.436 8 N -0.376 5.376 9 C -0.007 4.007 10 C -0.098 4.098 11 C 0.009 3.991 12 C -0.142 4.142 13 C 0.066 3.934 14 N -0.351 5.351 15 C -0.360 4.360 16 H 0.105 0.895 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.802 3.198 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.226 1.226 23 C 0.027 3.973 24 C -0.034 4.034 25 Cl 0.000 7.000 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.227 0.773 30 H 0.133 0.867 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.022 0.978 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.523 -1.844 -9.136 19.847 hybrid contribution -0.460 -0.322 0.514 0.762 sum -17.983 -2.166 -8.621 20.060 Atomic orbital electron populations 1.20627 0.86814 1.04125 1.03730 1.18675 0.99728 0.89354 1.05996 1.25678 0.99155 1.04391 1.06773 1.83551 1.02961 0.93249 1.65067 1.24409 0.96185 1.00101 1.20758 1.16473 0.80155 0.87062 0.76406 1.90841 1.80972 1.19253 1.52552 1.49636 1.03427 1.12334 1.72163 1.23112 0.87961 0.87477 1.02112 1.21971 0.95017 0.96645 0.96152 1.22834 0.78284 0.95872 1.02093 1.22280 0.99144 0.99450 0.93347 1.20905 0.90364 0.93835 0.88336 1.44824 1.39753 1.39172 1.11357 1.19490 1.08968 1.08954 0.98635 0.89476 1.25579 1.02223 1.02085 0.96088 1.70185 1.44417 1.41388 1.04155 0.85079 0.78566 0.78522 0.77594 1.18794 1.22148 1.22630 1.21306 0.90820 0.92458 0.92697 1.20505 0.90948 0.88900 1.03000 1.98374 1.82770 1.22686 1.96218 0.89784 0.91516 0.88931 0.77332 0.86731 0.90277 0.90054 0.86853 0.91436 0.90736 0.96704 0.97758 0.94654 0.94549 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.86 71.24 0.70 -0.53 16 2 C -0.13 -2.36 5.78 -21.03 -0.12 -2.48 16 3 C -0.22 -3.49 10.67 66.80 0.71 -2.78 16 4 S 0.28 5.64 19.89 -56.49 -1.12 4.51 16 5 C -0.29 -7.89 6.45 24.07 0.16 -7.73 16 6 C 0.61 19.17 8.03 86.38 0.69 19.86 16 7 O -0.56 -20.68 15.86 -4.43 -0.07 -20.75 16 8 N -0.64 -17.92 3.70 -864.83 -3.20 -21.12 16 9 C 0.12 3.04 6.55 83.77 0.55 3.58 16 10 C -0.10 -2.85 1.06 -52.63 -0.06 -2.90 16 11 C 0.13 3.33 8.02 83.66 0.67 4.00 16 12 C -0.10 -3.62 6.40 31.32 0.20 -3.42 16 13 C 0.19 8.90 5.39 86.81 0.47 9.37 16 14 N -0.62 -29.42 3.41 -693.44 -2.36 -31.78 16 15 C -0.23 -12.10 10.28 84.03 0.86 -11.23 16 16 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 18 N -0.95 -55.41 10.30 21.65 0.22 -55.19 16 19 Si 0.97 44.04 29.55 68.60 2.03 46.07 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 23 C 0.15 5.31 6.70 86.22 0.58 5.88 16 24 C 0.01 0.27 6.38 21.78 0.14 0.41 16 25 Cl -0.03 -0.78 26.18 -2.72 -0.07 -0.85 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.95 7.40 -2.39 -0.02 0.94 16 28 H 0.09 0.81 8.12 -2.38 -0.02 0.79 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.11 2.54 8.06 -2.39 -0.02 2.52 16 31 H 0.08 2.14 6.44 -2.39 -0.02 2.13 16 32 H 0.08 2.10 8.13 -2.39 -0.02 2.08 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 37 H 0.00 0.23 7.49 -2.39 -0.02 0.21 16 38 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.92 8.00 -2.38 -0.02 1.90 16 Total: -1.00 -69.22 353.14 2.51 -66.72 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.06 Total: 3.55 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.02 Total: 8.85 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -5.34 Total: -108.09 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.07 Total: -20.75 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.12 Total: 4.51 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.07 Total: -0.85 kcal Total: -69.22 2.51 -66.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072773477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.496 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds