Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.54031 * 112.12489 * 2 1 4 4 N 1.48334 * 104.53307 * 97.20648 * 3 2 1 5 5 C 1.36937 * 128.19849 * 221.77266 * 4 3 2 6 6 H 1.07995 * 119.99956 * 5.21764 * 5 4 3 7 7 C 1.38811 * 119.99955 * 185.20879 * 5 4 3 8 8 N 1.31621 * 119.99806 * 34.73688 * 7 5 4 9 9 Si 1.86801 * 120.00102 * 214.74024 * 7 5 4 10 10 H 1.48499 * 109.47209 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47263 * 59.99653 * 9 7 5 12 12 H 1.48501 * 109.46907 * 300.00038 * 9 7 5 13 13 C 1.48337 * 103.60220 * 41.50812 * 4 3 2 14 14 C 1.54454 * 104.32481 * 318.45823 * 13 4 3 15 15 H 1.08999 * 112.29409 * 263.01097 * 14 13 4 16 16 C 1.53740 * 109.01608 * 137.92603 * 14 13 4 17 17 N 1.48251 * 105.90309 * 229.74709 * 16 14 13 18 18 C 1.34770 * 126.41547 * 211.09287 * 17 16 14 19 19 O 1.21641 * 120.00055 * 173.99551 * 18 17 16 20 20 C 1.47158 * 119.99964 * 353.99131 * 18 17 16 21 21 C 1.36045 * 123.46830 * 334.88076 * 20 18 17 22 22 S 1.70444 * 110.83390 * 180.02562 * 21 20 18 23 23 C 1.75495 * 92.45833 * 359.97438 * 22 21 20 24 24 C 1.32846 * 110.58033 * 359.71908 * 23 22 21 25 25 Cl 1.73600 * 123.47127 * 180.24662 * 24 23 22 26 26 C 1.47189 * 106.87943 * 30.82728 * 17 16 14 27 27 H 1.09007 * 109.46755 * 302.41799 * 1 2 3 28 28 H 1.08994 * 109.47429 * 62.41288 * 1 2 3 29 29 H 1.08992 * 109.47211 * 182.41678 * 1 2 3 30 30 H 1.08999 * 110.39451 * 338.40836 * 3 2 1 31 31 H 1.09009 * 110.33179 * 215.96695 * 3 2 1 32 32 H 0.96998 * 120.00206 * 355.21751 * 8 7 5 33 33 H 1.09000 * 110.45993 * 77.16705 * 13 4 3 34 34 H 1.08999 * 110.46423 * 199.74448 * 13 4 3 35 35 H 1.09009 * 110.06228 * 348.69151 * 16 14 13 36 36 H 1.08996 * 110.07146 * 110.20986 * 16 14 13 37 37 H 1.08001 * 124.58290 * 0.02562 * 21 20 18 38 38 H 1.07996 * 124.71370 * 180.02562 * 23 22 21 39 39 H 1.09004 * 110.06682 * 209.64870 * 26 17 16 40 40 H 1.09003 * 110.06813 * 88.13216 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4172 1.7039 1.4245 5 6 2.2028 2.8591 2.1279 6 1 1.6809 3.6838 1.6655 7 6 2.6562 2.9700 3.4352 8 7 3.7821 2.3897 3.7927 9 14 1.6682 3.9427 4.6871 10 1 2.3622 3.9092 5.9995 11 1 0.3170 3.3426 4.8256 12 1 1.5403 5.3501 4.2311 13 6 3.0054 0.4310 1.9085 14 6 2.1222 -0.6645 1.2718 15 1 1.3494 -1.0204 1.9531 16 6 3.0230 -1.8032 0.7662 17 7 2.6007 -2.0656 -0.6304 18 6 2.6416 -3.2517 -1.2691 19 8 2.1637 -3.3597 -2.3825 20 6 3.2645 -4.4160 -0.6196 21 6 4.2218 -4.3158 0.3417 22 16 4.7161 -5.8597 0.8682 23 6 3.6108 -6.6704 -0.2276 24 6 2.9177 -5.7832 -0.9327 25 17 1.7232 -6.2214 -2.1138 26 6 2.1238 -0.7863 -1.1803 27 1 -0.3633 0.5510 0.8676 28 1 -0.3634 0.4759 -0.9108 29 1 -0.3633 -1.0267 0.0433 30 1 1.3732 2.1365 -0.3760 31 1 3.0192 1.4662 -0.6003 32 1 4.2595 1.8275 3.1625 33 1 4.0366 0.3343 1.5688 34 1 2.9549 0.3770 2.9960 35 1 4.0675 -1.4919 0.7890 36 1 2.8837 -2.6918 1.3818 37 1 4.6154 -3.3840 0.7202 38 1 3.5049 -7.7418 -0.3131 39 1 1.3568 -0.9658 -1.9337 40 1 2.9557 -0.2336 -1.6171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091764679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = 34.953658 kcal Electronic energy + Delta-G solvation = -25381.636165 eV Core-core repulsion = 21736.152363 eV Total energy + Delta-G solvation = -3645.483802 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.54986 -38.87663 -37.34434 -36.10164 -35.20753 -33.01848 -31.12257 -30.29031 -29.80174 -26.81847 -25.96760 -25.29337 -24.67691 -22.57585 -20.97640 -20.55373 -19.30597 -18.80987 -17.75955 -17.48781 -16.93642 -15.97193 -15.42433 -14.84610 -14.68554 -14.34262 -14.11526 -13.88154 -13.68327 -13.52510 -13.40878 -13.07743 -12.82384 -12.77687 -12.38814 -12.04834 -11.79675 -11.71825 -11.63055 -11.38501 -10.98682 -10.94292 -10.76708 -10.46015 -10.34381 -10.20435 -10.16653 -9.99648 -9.85637 -9.61892 -9.27975 -8.76693 -8.56441 -8.38473 -7.13191 -6.28979 -3.10601 0.40288 0.92979 1.35346 1.55348 2.33887 2.89429 3.17901 3.45252 3.50458 3.67529 4.28370 4.45117 4.49217 4.71475 4.82986 4.99603 5.06285 5.09215 5.27210 5.30614 5.42012 5.43297 5.51261 5.53698 5.56170 5.79636 5.84863 5.90099 6.01215 6.13866 6.15087 6.29555 6.42755 6.52038 6.56367 6.71607 6.82032 6.89183 7.53862 7.60166 8.15593 8.38291 8.87292 9.73753 10.35456 11.12804 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003113 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.026324 B = 8993.589301 C = 9994.879712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C 0.141 3.859 4 N -0.597 5.597 5 C -0.341 4.341 6 H 0.073 0.927 7 C -0.024 4.024 8 N -0.912 5.912 9 Si 1.065 2.935 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.138 3.862 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.101 3.899 17 N -0.608 5.608 18 C 0.590 3.410 19 O -0.526 6.526 20 C -0.142 4.142 21 C -0.208 4.208 22 S 0.228 5.772 23 C -0.239 4.239 24 C -0.008 4.008 25 Cl -0.023 7.023 26 C 0.120 3.880 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.268 0.732 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.079 0.921 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -18.120 -6.166 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.087 4.087 3 C 0.014 3.986 4 N -0.321 5.321 5 C -0.468 4.468 6 H 0.091 0.909 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.211 1.211 11 H -0.221 1.221 12 H -0.220 1.220 13 C 0.011 3.989 14 C -0.131 4.131 15 H 0.106 0.894 16 C -0.022 4.022 17 N -0.341 5.341 18 C 0.376 3.624 19 O -0.404 6.404 20 C -0.160 4.160 21 C -0.346 4.346 22 S 0.493 5.507 23 C -0.375 4.375 24 C -0.047 4.047 25 Cl 0.006 6.994 26 C -0.002 4.002 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.202 0.798 38 H 0.196 0.804 39 H 0.097 0.903 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.159 -18.068 -4.208 18.588 hybrid contribution -1.023 -0.029 -2.728 2.913 sum 0.136 -18.097 -6.936 19.381 Atomic orbital electron populations 1.21586 0.93119 1.00947 1.02106 1.22279 0.96042 0.97213 0.93176 1.21737 0.96792 0.92122 0.87971 1.45202 1.72366 1.09560 1.05009 1.19701 1.37296 0.93337 0.96455 0.90945 1.25680 0.96550 1.03410 0.96958 1.70872 1.09982 1.32782 1.41688 0.83471 0.75639 0.75114 0.76285 1.21149 1.22140 1.22012 1.21874 0.93064 0.84739 0.99255 1.23115 0.98135 0.94922 0.96930 0.89437 1.22718 0.98902 0.98931 0.81651 1.48684 1.63106 1.07955 1.14352 1.17050 0.79372 0.80879 0.85057 1.90827 1.46777 1.83576 1.19202 1.19921 1.01862 0.92998 1.01172 1.26038 1.02196 1.05310 1.01034 1.83179 1.37208 0.93615 1.36675 1.25421 1.03891 1.04218 1.03924 1.20625 0.96295 0.91561 0.96171 1.98395 1.53779 1.92178 1.55063 1.22183 0.99016 0.82552 0.96471 0.91542 0.92847 0.93369 0.92821 0.95728 0.92085 0.95826 0.90790 0.90800 0.90472 0.79765 0.80404 0.90278 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.59 37.16 0.32 -1.53 16 2 C -0.08 -1.38 1.07 -152.39 -0.16 -1.55 16 3 C 0.14 2.74 6.36 -2.49 -0.02 2.73 16 4 N -0.60 -14.19 3.35 -168.73 -0.57 -14.76 16 5 C -0.34 -9.23 10.17 -15.06 -0.15 -9.39 16 6 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 7 C -0.02 -0.67 5.02 -17.43 -0.09 -0.76 16 8 N -0.91 -26.33 12.75 55.49 0.71 -25.63 16 9 Si 1.06 24.58 30.03 -169.99 -5.11 19.47 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.14 2.87 4.75 -2.27 -0.01 2.86 16 14 C -0.11 -1.83 3.71 -88.29 -0.33 -2.16 16 15 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 16 C 0.10 1.38 4.78 -2.69 -0.01 1.37 16 17 N -0.61 -9.03 3.34 -172.15 -0.58 -9.61 16 18 C 0.59 9.22 7.68 -12.64 -0.10 9.13 16 19 O -0.53 -9.67 15.74 5.24 0.08 -9.58 16 20 C -0.14 -1.83 5.72 -104.61 -0.60 -2.43 16 21 C -0.21 -2.11 8.92 29.94 0.27 -1.84 16 22 S 0.23 1.74 23.02 -107.50 -2.47 -0.74 16 23 C -0.24 -2.11 11.00 28.88 0.32 -1.79 16 24 C -0.01 -0.09 6.47 -38.98 -0.25 -0.34 16 25 Cl -0.02 -0.29 27.61 -51.86 -1.43 -1.73 16 26 C 0.12 1.83 6.27 -3.27 -0.02 1.81 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 1.04 7.90 -51.93 -0.41 0.63 16 31 H 0.03 0.48 7.16 -51.92 -0.37 0.11 16 32 H 0.27 7.64 6.26 -40.82 -0.26 7.38 16 33 H 0.02 0.50 7.10 -51.93 -0.37 0.13 16 34 H 0.07 1.74 6.60 -51.93 -0.34 1.40 16 35 H 0.07 0.97 6.49 -51.92 -0.34 0.63 16 36 H 0.08 0.92 6.46 -51.93 -0.34 0.59 16 37 H 0.19 1.70 5.60 -52.49 -0.29 1.41 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 40 H 0.07 1.07 7.10 -51.93 -0.37 0.70 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -31.65 344.39 -9.81 -41.46 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.80 Total: -0.18 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.84 Total: -3.90 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.43 Total: -49.99 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.11 Total: 19.47 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.74 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.43 Total: -1.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.65 -9.81 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091764679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.410 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds