Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30129 * 121.05915 * 2 1 4 4 S 1.69949 * 105.76150 * 179.75640 * 3 2 1 5 5 C 1.72304 * 94.57349 * 0.34230 * 4 3 2 6 6 N 1.38323 * 127.50350 * 179.91727 * 5 4 3 7 7 C 1.48561 * 110.99689 * 359.68588 * 6 5 4 8 8 C 1.54383 * 104.59229 * 200.96064 * 7 6 5 9 9 H 1.09007 * 117.60438 * 242.75253 * 8 7 6 10 10 C 1.54258 * 106.28862 * 23.29054 * 8 7 6 11 11 H 1.09008 * 121.78444 * 221.49784 * 10 8 7 12 12 C 1.48563 * 110.99893 * 244.26753 * 6 5 4 13 13 C 1.53000 * 59.73114 * 113.46474 * 10 8 7 14 14 H 1.08997 * 117.40267 * 252.34323 * 13 10 8 15 15 N 1.46496 * 117.44472 * 107.64147 * 13 10 8 16 16 C 1.34774 * 119.99544 * 135.77657 * 15 13 10 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47383 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47375 * 119.99882 * 24 22 20 27 27 H 1.48505 * 109.46965 * 239.99565 * 24 22 20 28 28 N 1.31287 * 121.06185 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46828 * 269.98033 * 1 2 3 30 30 H 1.09008 * 109.46885 * 29.98127 * 1 2 3 31 31 H 1.08996 * 109.47018 * 149.98046 * 1 2 3 32 32 H 1.08999 * 110.41591 * 82.18291 * 7 6 5 33 33 H 1.08998 * 110.51286 * 319.78159 * 7 6 5 34 34 H 1.08998 * 110.40780 * 277.81442 * 12 6 5 35 35 H 1.08999 * 110.40914 * 40.25882 * 12 6 5 36 36 H 0.96994 * 120.00700 * 315.77777 * 15 13 10 37 37 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 38 38 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 39 39 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 0.0070 5 6 3.4971 -1.0266 -0.0008 6 7 4.4186 -2.0582 -0.0012 7 6 5.8076 -1.5312 -0.0015 8 6 6.6660 -2.6976 -0.5364 9 1 7.4193 -3.1175 0.1302 10 6 5.7150 -3.5945 -1.3554 11 1 5.7604 -4.6822 -1.2984 12 6 4.3289 -2.8516 -1.2540 13 6 6.8421 -2.8283 -2.0507 14 1 6.5624 -1.9723 -2.6647 15 7 7.9881 -3.6032 -2.5327 16 6 8.4981 -3.3616 -3.7566 17 8 8.0086 -2.5025 -4.4588 18 6 9.6767 -4.1592 -4.2527 19 16 10.1231 -3.6044 -5.9168 20 6 11.4870 -4.6721 -6.2396 21 1 11.7987 -5.3901 -5.4954 22 6 12.1616 -4.5897 -7.4498 23 7 11.7820 -3.7143 -8.3566 24 14 13.6072 -5.7222 -7.7923 25 1 13.8305 -6.6078 -6.6214 26 1 13.3150 -6.5493 -8.9905 27 1 14.8256 -4.9093 -8.0371 28 7 2.1845 -1.1246 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 6.1141 -1.2666 1.0105 33 1 5.8880 -0.6668 -0.6606 34 1 3.5220 -3.5811 -1.1850 35 1 4.1762 -2.1943 -2.1101 36 1 8.3799 -4.2901 -1.9710 37 1 10.5228 -4.0129 -3.5814 38 1 9.4139 -5.2166 -4.2809 39 1 12.2532 -3.6570 -9.2025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093217473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = 68.252925 kcal Electronic energy + Delta-G solvation = -23134.311438 eV Core-core repulsion = 19524.608058 eV Total energy + Delta-G solvation = -3609.703380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.23029 -40.29450 -38.97577 -36.00395 -33.31036 -32.48245 -31.80635 -30.09980 -29.21962 -29.16847 -25.92638 -25.48992 -22.92513 -21.58623 -21.34105 -20.61580 -19.85858 -19.17578 -17.94065 -17.47343 -17.02372 -16.48996 -16.10501 -15.05141 -14.88736 -14.85142 -14.78775 -14.58993 -14.18204 -13.57519 -13.49751 -13.32680 -13.11982 -13.00928 -12.83575 -12.58027 -12.36312 -12.28073 -12.18800 -11.84352 -11.26479 -11.11145 -11.08406 -11.07862 -10.81924 -10.55734 -10.19627 -9.87210 -9.77276 -9.62043 -9.12947 -9.06937 -8.92013 -8.31323 -6.57113 -6.27263 -3.98588 -0.01086 0.60125 1.27272 2.11136 2.46670 2.71239 2.79496 3.18096 3.21164 3.27310 3.29565 3.47469 3.81069 4.00021 4.14598 4.15533 4.28703 4.38415 4.60595 4.72460 4.80777 4.87590 4.93082 5.05759 5.08175 5.08390 5.16675 5.25956 5.31056 5.47952 5.54369 5.57785 5.63853 5.73627 5.77417 5.99400 6.03408 6.37798 7.19798 7.45938 7.54832 8.29877 8.39430 9.18404 10.80207 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.001786 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.572352 B =15671.693024 C =15953.893948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.284 3.716 3 N -0.484 5.484 4 S 0.195 5.805 5 C 0.264 3.736 6 N -0.410 5.410 7 C 0.055 3.945 8 C -0.174 4.174 9 H 0.132 0.868 10 C -0.169 4.169 11 H 0.136 0.864 12 C 0.077 3.923 13 C 0.129 3.871 14 H 0.138 0.862 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.510 6.510 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.074 0.926 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.529 5.529 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.403 0.597 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 2.987 20.851 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.006 4.006 3 N -0.316 5.316 4 S 0.332 5.668 5 C -0.115 4.115 6 N -0.131 5.131 7 C -0.072 4.072 8 C -0.195 4.195 9 H 0.150 0.850 10 C -0.190 4.190 11 H 0.154 0.846 12 C -0.050 4.050 13 C 0.020 3.980 14 H 0.155 0.845 15 N -0.360 5.360 16 C 0.325 3.675 17 O -0.383 6.383 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 N -0.256 5.256 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.799 5.399 19.946 27.273 hybrid contribution 1.362 -2.541 0.556 2.936 sum -16.438 2.857 20.502 26.433 Atomic orbital electron populations 1.20437 0.83480 1.04606 1.04297 1.23497 1.00202 0.82124 0.94813 1.77541 0.98238 1.26017 1.29781 1.85184 1.12869 1.01393 1.67324 1.27227 0.92710 0.95935 0.95646 1.61640 1.02142 1.14139 1.35189 1.23027 0.84068 0.96322 1.03777 1.23777 1.02089 0.98621 0.94982 0.85013 1.24702 0.89285 0.99267 1.05759 0.84586 1.23313 0.97814 0.96448 0.87449 1.21669 0.87651 0.97008 0.91635 0.84459 1.45365 1.32398 1.40048 1.18239 1.20405 0.83887 0.83237 0.79962 1.90714 1.60272 1.32310 1.55029 1.23537 0.97573 1.02623 1.06665 1.85433 1.40347 1.50350 1.07055 1.22900 1.17324 1.23327 1.04912 0.90794 1.25001 0.97669 0.95887 0.95029 1.70023 1.39872 1.33530 1.06781 0.86103 0.80993 0.79926 0.78392 1.19603 1.20534 1.20537 1.67386 1.03755 1.29844 1.24648 0.89278 0.89383 0.89075 0.87231 0.90790 0.87409 0.91184 0.76242 0.88930 0.88940 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.42 36.01 0.38 -0.05 16 2 C 0.28 2.93 7.56 -159.03 -1.20 1.72 16 3 N -0.48 -5.53 12.15 29.54 0.36 -5.17 16 4 S 0.19 1.92 21.86 -107.50 -2.35 -0.43 16 5 C 0.26 2.67 6.89 -86.35 -0.60 2.08 16 6 N -0.41 -3.57 5.46 -168.04 -0.92 -4.49 16 7 C 0.06 0.39 5.68 -2.18 -0.01 0.38 16 8 C -0.17 -1.23 6.97 -89.23 -0.62 -1.85 16 9 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 10 C -0.17 -1.29 7.33 -87.45 -0.64 -1.93 16 11 H 0.14 0.90 8.14 -51.92 -0.42 0.48 16 12 C 0.08 0.63 6.29 -0.40 0.00 0.63 16 13 C 0.13 1.27 5.92 -67.93 -0.40 0.86 16 14 H 0.14 1.62 7.40 -51.93 -0.38 1.24 16 15 N -0.71 -8.05 5.56 -53.80 -0.30 -8.35 16 16 C 0.54 9.11 7.85 -10.98 -0.09 9.02 16 17 O -0.51 -10.74 15.43 5.56 0.09 -10.66 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 24 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 N -0.53 -5.87 10.61 -14.58 -0.15 -6.02 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.53 6.91 -51.93 -0.36 0.18 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.62 7.97 -51.93 -0.41 0.20 16 36 H 0.40 3.32 8.83 -40.82 -0.36 2.96 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -35.14 362.30 -11.95 -47.09 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.87 Total: -0.33 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.77 Total: -4.37 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.28 Total: -48.93 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -4.56 Total: -4.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.14 -11.95 -47.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.343 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds