Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30129 * 121.05915 * 2 1 4 4 S 1.69949 * 105.76150 * 179.75640 * 3 2 1 5 5 C 1.72304 * 94.57349 * 0.34230 * 4 3 2 6 6 N 1.38323 * 127.50350 * 179.91727 * 5 4 3 7 7 C 1.48561 * 110.99689 * 359.68588 * 6 5 4 8 8 C 1.54383 * 104.59229 * 200.96064 * 7 6 5 9 9 H 1.09007 * 117.60438 * 242.75253 * 8 7 6 10 10 C 1.54258 * 106.28862 * 23.29054 * 8 7 6 11 11 H 1.09008 * 121.78444 * 221.49784 * 10 8 7 12 12 C 1.48563 * 110.99893 * 244.26753 * 6 5 4 13 13 C 1.53000 * 59.73114 * 113.46474 * 10 8 7 14 14 H 1.08997 * 117.40267 * 252.34323 * 13 10 8 15 15 N 1.46496 * 117.44472 * 107.64147 * 13 10 8 16 16 C 1.34774 * 119.99544 * 135.77657 * 15 13 10 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47383 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47375 * 119.99882 * 24 22 20 27 27 H 1.48505 * 109.46965 * 239.99565 * 24 22 20 28 28 N 1.31287 * 121.06185 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46828 * 269.98033 * 1 2 3 30 30 H 1.09008 * 109.46885 * 29.98127 * 1 2 3 31 31 H 1.08996 * 109.47018 * 149.98046 * 1 2 3 32 32 H 1.08999 * 110.41591 * 82.18291 * 7 6 5 33 33 H 1.08998 * 110.51286 * 319.78159 * 7 6 5 34 34 H 1.08998 * 110.40780 * 277.81442 * 12 6 5 35 35 H 1.08999 * 110.40914 * 40.25882 * 12 6 5 36 36 H 0.96994 * 120.00700 * 315.77777 * 15 13 10 37 37 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 38 38 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 39 39 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 0.0070 5 6 3.4971 -1.0266 -0.0008 6 7 4.4186 -2.0582 -0.0012 7 6 5.8076 -1.5312 -0.0015 8 6 6.6660 -2.6976 -0.5364 9 1 7.4193 -3.1175 0.1302 10 6 5.7150 -3.5945 -1.3554 11 1 5.7604 -4.6822 -1.2984 12 6 4.3289 -2.8516 -1.2540 13 6 6.8421 -2.8283 -2.0507 14 1 6.5624 -1.9723 -2.6647 15 7 7.9881 -3.6032 -2.5327 16 6 8.4981 -3.3616 -3.7566 17 8 8.0086 -2.5025 -4.4588 18 6 9.6767 -4.1592 -4.2527 19 16 10.1231 -3.6044 -5.9168 20 6 11.4870 -4.6721 -6.2396 21 1 11.7987 -5.3901 -5.4954 22 6 12.1616 -4.5897 -7.4498 23 7 11.7820 -3.7143 -8.3566 24 14 13.6072 -5.7222 -7.7923 25 1 13.8305 -6.6078 -6.6214 26 1 13.3150 -6.5493 -8.9905 27 1 14.8256 -4.9093 -8.0371 28 7 2.1845 -1.1246 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 6.1141 -1.2666 1.0105 33 1 5.8880 -0.6668 -0.6606 34 1 3.5220 -3.5811 -1.1850 35 1 4.1762 -2.1943 -2.1101 36 1 8.3799 -4.2901 -1.9710 37 1 10.5228 -4.0129 -3.5814 38 1 9.4139 -5.2166 -4.2809 39 1 12.2532 -3.6570 -9.2025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093217473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = 42.900892 kcal Electronic energy + Delta-G solvation = -23135.410784 eV Core-core repulsion = 19524.608058 eV Total energy + Delta-G solvation = -3610.802727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.96592 -41.11811 -40.16102 -36.87877 -34.58145 -34.32540 -32.65325 -30.73608 -30.56002 -29.80568 -27.68503 -26.62201 -23.68941 -22.32966 -22.05628 -21.82206 -20.57839 -19.92827 -19.79837 -18.22770 -17.95502 -17.79095 -16.91142 -16.87000 -16.39865 -16.11885 -15.52243 -15.48785 -15.22997 -14.76735 -14.60767 -14.22039 -14.09038 -13.85224 -13.62527 -13.55000 -13.38044 -13.15152 -12.99161 -12.91539 -12.87008 -12.59778 -12.58987 -12.12635 -11.84204 -11.71797 -11.26509 -11.15259 -11.06802 -10.95783 -10.50820 -10.26135 -9.89111 -9.78759 -8.65784 -8.34359 -6.11998 -0.77965 -0.16092 0.52020 1.24400 1.35815 1.42219 1.45656 1.48518 1.57153 1.81962 2.13314 2.27855 2.52588 3.00376 3.14679 3.20726 3.35569 3.50580 3.56103 3.76043 3.87939 4.01811 4.10203 4.20656 4.24010 4.32400 4.42809 4.52679 4.56118 4.61754 4.63708 4.67800 4.90893 4.96388 5.02141 5.07909 5.27934 5.41892 5.43463 6.20833 6.43778 6.43928 7.07624 7.18987 8.74977 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.001786 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.572352 B =15671.693024 C =15953.893948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.278 3.722 3 N -0.513 5.513 4 S 0.198 5.802 5 C 0.262 3.738 6 N -0.409 5.409 7 C 0.049 3.951 8 C -0.145 4.145 9 H 0.160 0.840 10 C -0.153 4.153 11 H 0.157 0.843 12 C 0.075 3.925 13 C 0.098 3.902 14 H 0.112 0.888 15 N -0.680 5.680 16 C 0.541 3.459 17 O -0.562 6.562 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.544 4.544 21 H 0.085 0.915 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.275 1.275 28 N -0.547 5.547 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.423 0.577 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 0.998 23.367 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 N -0.346 5.346 4 S 0.336 5.664 5 C -0.116 4.116 6 N -0.129 5.129 7 C -0.078 4.078 8 C -0.165 4.165 9 H 0.177 0.823 10 C -0.173 4.173 11 H 0.174 0.826 12 C -0.052 4.052 13 C -0.009 4.009 14 H 0.129 0.871 15 N -0.332 5.332 16 C 0.328 3.672 17 O -0.439 6.439 18 C -0.280 4.280 19 S 0.074 5.926 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.201 1.201 28 N -0.276 5.276 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.449 3.383 22.534 28.700 hybrid contribution 1.140 -1.900 -0.101 2.218 sum -16.309 1.484 22.433 27.774 Atomic orbital electron populations 1.20610 0.81119 1.05471 1.05527 1.24126 1.01682 0.81672 0.93661 1.77522 0.98970 1.26887 1.31180 1.85069 1.12458 1.01332 1.67544 1.27427 0.92868 0.96264 0.95046 1.61712 1.02540 1.13748 1.34945 1.23207 0.83307 0.96271 1.05002 1.23839 1.01748 0.98004 0.92938 0.82264 1.24701 0.88346 1.00103 1.04200 0.82586 1.23337 0.98522 0.96406 0.86960 1.21666 0.88426 0.97283 0.93535 0.87056 1.44934 1.32083 1.39882 1.16338 1.20075 0.83432 0.82480 0.81256 1.90707 1.61743 1.34530 1.56929 1.23365 0.99239 1.03673 1.01730 1.85623 1.41114 1.52011 1.13830 1.23247 1.17296 1.23268 1.05405 0.89700 1.26121 1.00831 0.97504 0.94754 1.70189 1.41607 1.35627 1.07414 0.84911 0.76745 0.77682 0.78649 1.17877 1.20086 1.20080 1.67457 1.04218 1.30365 1.25530 0.87730 0.88537 0.88124 0.85114 0.91183 0.86814 0.92349 0.73914 0.86761 0.86800 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 71.24 0.74 -0.02 16 2 C 0.28 5.59 7.56 139.40 1.05 6.65 16 3 N -0.51 -11.65 12.15 -60.46 -0.73 -12.38 16 4 S 0.20 3.86 21.86 -56.49 -1.24 2.62 16 5 C 0.26 5.10 6.89 178.86 1.23 6.33 16 6 N -0.41 -6.40 5.46 -685.56 -3.74 -10.15 16 7 C 0.05 0.58 5.68 86.45 0.49 1.08 16 8 C -0.15 -1.59 6.97 -9.90 -0.07 -1.65 16 9 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 10 C -0.15 -1.93 7.33 -8.74 -0.06 -2.00 16 11 H 0.16 1.45 8.14 -2.38 -0.02 1.43 16 12 C 0.07 1.12 6.29 87.61 0.55 1.67 16 13 C 0.10 1.78 5.92 45.00 0.27 2.05 16 14 H 0.11 2.69 7.40 -2.39 -0.02 2.67 16 15 N -0.68 -13.97 5.56 -442.53 -2.46 -16.44 16 16 C 0.54 17.97 7.85 87.66 0.69 18.66 16 17 O -0.56 -24.37 15.43 -3.02 -0.05 -24.42 16 18 C -0.13 -4.67 6.16 71.24 0.44 -4.23 16 19 S -0.15 -8.19 20.57 -56.49 -1.16 -9.35 16 20 C -0.54 -30.15 9.50 67.95 0.65 -29.50 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 24 Si 1.00 42.64 29.55 68.60 2.03 44.67 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 28 N -0.55 -11.75 10.61 -200.04 -2.12 -13.88 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.94 6.91 -2.39 -0.02 0.92 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.02 7.97 -2.39 -0.02 1.00 16 36 H 0.42 5.39 8.83 -92.71 -0.82 4.58 16 37 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.58 362.30 -2.47 -82.05 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.28 Total: 11.99 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 6.44 Total: 0.18 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -8.78 Total: -107.74 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.40 Total: -6.73 kcal Total: -79.58 -2.47 -82.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093217473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.948 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds