Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48495 * 109.47034 * 274.34469 * 3 2 1 5 5 H 1.48495 * 109.47109 * 34.34438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 154.34556 * 3 2 1 7 7 C 1.38816 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00116 * 348.40336 * 7 2 1 9 9 N 1.36934 * 119.99933 * 168.39732 * 7 2 1 10 10 C 1.46893 * 120.34985 * 326.50704 * 9 7 2 11 11 C 1.52951 * 108.47864 * 235.42915 * 10 9 7 12 12 N 1.46925 * 108.61345 * 309.58020 * 11 10 9 13 13 C 1.34773 * 120.31872 * 235.16728 * 12 11 10 14 14 O 1.21702 * 120.00075 * 173.48448 * 13 12 11 15 15 C 1.46654 * 120.00433 * 353.21031 * 13 12 11 16 16 C 1.36540 * 125.99169 * 172.57330 * 15 13 12 17 17 C 1.40371 * 106.71066 * 180.02562 * 16 15 13 18 18 C 1.35126 * 107.11162 * 359.97438 * 17 16 15 19 19 O 1.33938 * 108.77134 * 359.73671 * 18 17 16 20 20 C 1.46536 * 119.35580 * 54.90046 * 12 11 10 21 21 H 1.09001 * 110.23937 * 185.94612 * 20 12 11 22 22 C 1.54817 * 109.01140 * 64.17230 * 20 12 11 23 23 S 1.83282 * 102.64671 * 199.66975 * 22 20 12 24 24 O 1.42096 * 109.34993 * 269.60054 * 23 22 20 25 25 O 1.42106 * 109.34992 * 136.40524 * 23 22 20 26 26 C 1.82904 * 97.03647 * 23.00608 * 23 22 20 27 27 C 1.46794 * 120.35224 * 146.48123 * 9 7 2 28 28 H 1.08996 * 109.89608 * 247.65638 * 27 9 7 29 29 H 0.97002 * 119.99411 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.67754 * 355.29958 * 10 9 7 31 31 H 1.09005 * 109.67236 * 115.80229 * 10 9 7 32 32 H 1.08997 * 109.59685 * 189.75682 * 11 10 9 33 33 H 1.09006 * 109.52249 * 69.35224 * 11 10 9 34 34 H 1.08000 * 126.64847 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.44221 * 180.02562 * 17 16 15 36 36 H 1.08000 * 125.61451 * 180.02562 * 18 17 16 37 37 H 1.08994 * 110.77461 * 317.96235 * 22 20 12 38 38 H 1.08999 * 110.77485 * 81.38192 * 22 20 12 39 39 H 1.09001 * 110.30002 * 243.01862 * 26 23 22 40 40 H 1.08999 * 110.30700 * 120.86731 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4967 2.6244 0.7898 6 1 3.5907 1.4153 0.6061 7 6 2.0102 -1.2022 -0.0005 8 1 1.4867 -2.1280 0.1871 9 7 3.3586 -1.2143 -0.2391 10 6 3.9582 -0.2391 -1.1594 11 6 4.7309 -1.0012 -2.2372 12 7 5.6183 -1.9710 -1.5808 13 6 6.9412 -1.9654 -1.8382 14 8 7.6873 -2.6894 -1.2054 15 6 7.4810 -1.0914 -2.8849 16 6 8.8035 -0.8811 -3.1515 17 6 8.8603 0.0213 -4.2251 18 6 7.5860 0.3180 -4.5629 19 8 6.7577 -0.3591 -3.7571 20 6 5.0518 -2.9403 -0.6392 21 1 5.8477 -3.5134 -0.1635 22 6 4.0819 -3.8761 -1.4011 23 16 3.0509 -4.5687 -0.0534 24 8 3.6474 -5.7650 0.4284 25 8 1.6878 -4.5670 -0.4550 26 6 3.3284 -3.2239 1.1548 27 6 4.2201 -2.2015 0.4227 28 1 4.8815 -1.7016 1.1302 29 1 -0.4849 0.8401 -0.0004 30 1 3.1736 0.3594 -1.6222 31 1 4.6408 0.4108 -0.6117 32 1 5.3235 -0.3012 -2.8262 33 1 4.0295 -1.5259 -2.8860 34 1 9.6433 -1.3228 -2.6356 35 1 9.7543 0.4055 -4.6937 36 1 7.2850 0.9871 -5.3555 37 1 3.4705 -3.3099 -2.1037 38 1 4.6301 -4.6665 -1.9138 39 1 3.8396 -3.6080 2.0375 40 1 2.3799 -2.7659 1.4355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094600312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -15.129183 kcal Electronic energy + Delta-G solvation = -29260.246084 eV Core-core repulsion = 25171.881363 eV Total energy + Delta-G solvation = -4088.364722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.91166 -40.16397 -37.99116 -36.61216 -35.58160 -34.72499 -33.74461 -33.18835 -31.62975 -30.32763 -29.00141 -27.90218 -25.78140 -23.99507 -23.15897 -22.12424 -21.95556 -20.55448 -19.34297 -18.49702 -17.90616 -17.06990 -16.77390 -16.63684 -16.45752 -16.01823 -15.48912 -15.42029 -14.93790 -14.72526 -14.62376 -14.19880 -14.03260 -13.49170 -13.31918 -13.08824 -12.91765 -12.85944 -12.78164 -12.27799 -11.99935 -11.84242 -11.75340 -11.63585 -11.57341 -11.12846 -10.85611 -10.62576 -10.40875 -10.33110 -10.23645 -10.02449 -9.88063 -9.65095 -9.07091 -8.91501 -8.60158 -7.21164 -6.15908 -3.68743 0.45006 0.92113 2.17477 2.44106 2.84733 2.99809 3.11483 3.17690 3.29345 3.32115 3.95213 4.27052 4.30494 4.34881 4.55178 4.69374 4.70809 4.74213 4.85185 5.02206 5.08638 5.16957 5.28279 5.46747 5.50826 5.54556 5.59502 5.61745 5.68502 5.81049 5.98941 6.11468 6.13491 6.17447 6.32417 6.39626 6.50108 6.70777 7.30904 7.66746 7.96730 8.07982 8.59838 9.41170 9.73374 10.96766 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.005937 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.712404 B = 4714.986861 C = 6730.571681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.040 3.960 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.293 4.293 8 H 0.104 0.896 9 N -0.602 5.602 10 C 0.112 3.888 11 C 0.072 3.928 12 N -0.576 5.576 13 C 0.598 3.402 14 O -0.528 6.528 15 C -0.070 4.070 16 C -0.123 4.123 17 C -0.225 4.225 18 C -0.016 4.016 19 O -0.154 6.154 20 C 0.133 3.867 21 H 0.122 0.878 22 C -0.597 4.597 23 S 2.387 3.613 24 O -0.954 6.954 25 O -0.923 6.923 26 C -0.587 4.587 27 C 0.175 3.825 28 H 0.073 0.927 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.208 0.792 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.157 0.493 -7.118 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.162 4.162 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.421 4.421 8 H 0.121 0.879 9 N -0.326 5.326 10 C -0.014 4.014 11 C -0.051 4.051 12 N -0.307 5.307 13 C 0.386 3.614 14 O -0.407 6.407 15 C -0.122 4.122 16 C -0.143 4.143 17 C -0.244 4.244 18 C -0.085 4.085 19 O -0.050 6.050 20 C 0.026 3.974 21 H 0.139 0.861 22 C -0.726 4.726 23 S 2.570 3.430 24 O -0.951 6.951 25 O -0.920 6.920 26 C -0.718 4.718 27 C 0.067 3.933 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.225 0.775 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 13.456 -0.656 -6.703 15.047 hybrid contribution 1.042 1.978 -0.346 2.262 sum 14.498 1.321 -7.049 16.175 Atomic orbital electron populations 1.69770 1.05720 1.27000 1.50767 1.25416 0.95214 0.97830 0.97739 0.86952 0.80137 0.84135 0.77265 1.21298 1.22833 1.18930 1.18996 0.80470 0.94999 1.47601 0.87908 1.44338 1.04633 1.35870 1.47791 1.21792 0.96571 0.92249 0.90740 1.22888 0.93827 0.91851 0.96562 1.47643 1.06186 1.33692 1.43133 1.16775 0.82005 0.81286 0.81312 1.90855 1.57852 1.41837 1.50122 1.22058 0.90917 1.02002 0.97212 1.21947 0.95781 0.98774 0.97824 1.21830 0.98253 1.03393 1.00952 1.24567 0.89113 0.98260 0.96576 1.84316 1.36294 1.47074 1.37318 1.22309 0.96098 0.89207 0.89757 0.86060 1.30871 1.13710 1.10580 1.17459 1.09153 0.76626 0.77406 0.79795 1.93569 1.79206 1.42961 1.79368 1.93642 1.30325 1.87032 1.80965 1.30893 1.12715 1.14603 1.13574 1.20957 0.91196 0.90192 0.90985 0.90972 0.92244 0.89306 0.94134 0.87839 0.90180 0.82326 0.82752 0.77530 0.83448 0.85274 0.85053 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.97 55.49 0.78 -24.45 16 2 C 0.04 1.04 5.35 -17.43 -0.09 0.95 16 3 Si 0.88 20.02 24.34 -169.99 -4.14 15.88 16 4 H -0.29 -6.18 6.80 56.52 0.38 -5.79 16 5 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.26 -5.79 5.98 56.52 0.34 -5.45 16 7 C -0.29 -7.10 8.74 -15.06 -0.13 -7.23 16 8 H 0.10 2.64 5.40 -52.49 -0.28 2.36 16 9 N -0.60 -12.18 2.54 -164.01 -0.42 -12.59 16 10 C 0.11 2.09 4.26 -3.85 -0.02 2.07 16 11 C 0.07 1.11 5.87 -3.84 -0.02 1.09 16 12 N -0.58 -9.05 2.67 -165.75 -0.44 -9.49 16 13 C 0.60 9.45 7.64 -12.87 -0.10 9.35 16 14 O -0.53 -9.35 16.28 5.19 0.08 -9.27 16 15 C -0.07 -0.95 6.77 -36.80 -0.25 -1.20 16 16 C -0.12 -1.42 10.63 -39.39 -0.42 -1.84 16 17 C -0.23 -2.02 10.88 -39.89 -0.43 -2.45 16 18 C -0.02 -0.14 12.08 29.63 0.36 0.22 16 19 O -0.15 -1.84 7.21 4.96 0.04 -1.80 16 20 C 0.13 2.08 2.99 -66.54 -0.20 1.88 16 21 H 0.12 1.78 7.01 -51.93 -0.36 1.42 16 22 C -0.60 -8.87 6.63 38.11 0.25 -8.62 16 23 S 2.39 39.63 6.02 -107.50 -0.65 38.99 16 24 O -0.95 -17.23 18.14 -57.71 -1.05 -18.27 16 25 O -0.92 -19.16 17.40 -57.71 -1.00 -20.17 16 26 C -0.59 -9.36 6.18 37.76 0.23 -9.12 16 27 C 0.18 3.00 3.52 -66.76 -0.23 2.76 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.09 1.77 4.56 -51.93 -0.24 1.53 16 31 H 0.04 0.76 6.73 -51.93 -0.35 0.41 16 32 H 0.10 1.43 4.11 -53.71 -0.22 1.21 16 33 H 0.08 1.21 7.03 -51.93 -0.36 0.85 16 34 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.15 2.28 6.69 -51.93 -0.35 1.93 16 38 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.18 3.24 5.41 -51.93 -0.28 2.96 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -34.17 323.84 -7.17 -41.34 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.20 Total: 7.08 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.05 Total: -12.13 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.09 Total: -46.53 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.93 Total: -49.51 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.14 Total: 15.88 kcal Atomic # 16 Polarization: 39.63 SS G_CDS: -0.65 Total: 38.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.17 -7.17 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094600312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.211 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds