Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48495 * 109.47034 * 274.34469 * 3 2 1 5 5 H 1.48495 * 109.47109 * 34.34438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 154.34556 * 3 2 1 7 7 C 1.38816 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00116 * 348.40336 * 7 2 1 9 9 N 1.36934 * 119.99933 * 168.39732 * 7 2 1 10 10 C 1.46893 * 120.34985 * 326.50704 * 9 7 2 11 11 C 1.52951 * 108.47864 * 235.42915 * 10 9 7 12 12 N 1.46925 * 108.61345 * 309.58020 * 11 10 9 13 13 C 1.34773 * 120.31872 * 235.16728 * 12 11 10 14 14 O 1.21702 * 120.00075 * 173.48448 * 13 12 11 15 15 C 1.46654 * 120.00433 * 353.21031 * 13 12 11 16 16 C 1.36540 * 125.99169 * 172.57330 * 15 13 12 17 17 C 1.40371 * 106.71066 * 180.02562 * 16 15 13 18 18 C 1.35126 * 107.11162 * 359.97438 * 17 16 15 19 19 O 1.33938 * 108.77134 * 359.73671 * 18 17 16 20 20 C 1.46536 * 119.35580 * 54.90046 * 12 11 10 21 21 H 1.09001 * 110.23937 * 185.94612 * 20 12 11 22 22 C 1.54817 * 109.01140 * 64.17230 * 20 12 11 23 23 S 1.83282 * 102.64671 * 199.66975 * 22 20 12 24 24 O 1.42096 * 109.34993 * 269.60054 * 23 22 20 25 25 O 1.42106 * 109.34992 * 136.40524 * 23 22 20 26 26 C 1.82904 * 97.03647 * 23.00608 * 23 22 20 27 27 C 1.46794 * 120.35224 * 146.48123 * 9 7 2 28 28 H 1.08996 * 109.89608 * 247.65638 * 27 9 7 29 29 H 0.97002 * 119.99411 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.67754 * 355.29958 * 10 9 7 31 31 H 1.09005 * 109.67236 * 115.80229 * 10 9 7 32 32 H 1.08997 * 109.59685 * 189.75682 * 11 10 9 33 33 H 1.09006 * 109.52249 * 69.35224 * 11 10 9 34 34 H 1.08000 * 126.64847 * 359.97438 * 16 15 13 35 35 H 1.08005 * 126.44221 * 180.02562 * 17 16 15 36 36 H 1.08000 * 125.61451 * 180.02562 * 18 17 16 37 37 H 1.08994 * 110.77461 * 317.96235 * 22 20 12 38 38 H 1.08999 * 110.77485 * 81.38192 * 22 20 12 39 39 H 1.09001 * 110.30002 * 243.01862 * 26 23 22 40 40 H 1.08999 * 110.30700 * 120.86731 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4967 2.6244 0.7898 6 1 3.5907 1.4153 0.6061 7 6 2.0102 -1.2022 -0.0005 8 1 1.4867 -2.1280 0.1871 9 7 3.3586 -1.2143 -0.2391 10 6 3.9582 -0.2391 -1.1594 11 6 4.7309 -1.0012 -2.2372 12 7 5.6183 -1.9710 -1.5808 13 6 6.9412 -1.9654 -1.8382 14 8 7.6873 -2.6894 -1.2054 15 6 7.4810 -1.0914 -2.8849 16 6 8.8035 -0.8811 -3.1515 17 6 8.8603 0.0213 -4.2251 18 6 7.5860 0.3180 -4.5629 19 8 6.7577 -0.3591 -3.7571 20 6 5.0518 -2.9403 -0.6392 21 1 5.8477 -3.5134 -0.1635 22 6 4.0819 -3.8761 -1.4011 23 16 3.0509 -4.5687 -0.0534 24 8 3.6474 -5.7650 0.4284 25 8 1.6878 -4.5670 -0.4550 26 6 3.3284 -3.2239 1.1548 27 6 4.2201 -2.2015 0.4227 28 1 4.8815 -1.7016 1.1302 29 1 -0.4849 0.8401 -0.0004 30 1 3.1736 0.3594 -1.6222 31 1 4.6408 0.4108 -0.6117 32 1 5.3235 -0.3012 -2.8262 33 1 4.0295 -1.5259 -2.8860 34 1 9.6433 -1.3228 -2.6356 35 1 9.7543 0.4055 -4.6937 36 1 7.2850 0.9871 -5.3555 37 1 3.4705 -3.3099 -2.1037 38 1 4.6301 -4.6665 -1.9138 39 1 3.8396 -3.6080 2.0375 40 1 2.3799 -2.7659 1.4355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094600312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -42.266976 kcal Electronic energy + Delta-G solvation = -29261.422867 eV Core-core repulsion = 25171.881363 eV Total energy + Delta-G solvation = -4089.541505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.73221 -41.41634 -39.33093 -38.08339 -37.06892 -36.12448 -35.16109 -34.03011 -33.43347 -31.34630 -30.13762 -29.38648 -27.24770 -25.25774 -24.55573 -23.44226 -22.73522 -21.65529 -20.61477 -19.89079 -19.20248 -18.28679 -18.17858 -17.92157 -17.46564 -17.21630 -16.99507 -16.78497 -16.40380 -16.13542 -15.91630 -15.59326 -15.22650 -14.78416 -14.47634 -14.28429 -14.19526 -14.10729 -13.87085 -13.56247 -13.43046 -13.26276 -13.20064 -13.08857 -13.03748 -12.47419 -12.40654 -12.10720 -11.95608 -11.77593 -11.57714 -11.32263 -11.23923 -11.00130 -10.85540 -10.11682 -9.63735 -8.89867 -8.12569 -5.61775 -0.90999 0.00713 1.31069 1.37635 1.43696 1.45709 1.52074 1.66633 1.92584 2.09050 2.41176 2.60278 2.92244 3.08226 3.21323 3.29783 3.42748 3.56332 3.67133 3.92704 3.96165 4.08102 4.13548 4.21406 4.27268 4.38639 4.43644 4.55679 4.69949 4.75621 4.77986 4.88645 4.92823 5.01106 5.09570 5.27164 5.45693 5.85037 5.86872 6.14193 6.19676 6.79865 6.81847 7.52292 7.90068 9.04190 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.005937 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.712404 B = 4714.986861 C = 6730.571681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.020 4.020 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.319 1.319 6 H -0.251 1.251 7 C -0.267 4.267 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.106 3.894 11 C 0.082 3.918 12 N -0.579 5.579 13 C 0.599 3.401 14 O -0.554 6.554 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.230 4.230 18 C 0.003 3.997 19 O -0.167 6.167 20 C 0.134 3.866 21 H 0.136 0.864 22 C -0.581 4.581 23 S 2.399 3.601 24 O -0.967 6.967 25 O -0.971 6.971 26 C -0.582 4.582 27 C 0.171 3.829 28 H 0.084 0.916 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.251 0.749 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.590 1.405 -8.798 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.217 4.217 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.249 1.249 6 H -0.175 1.175 7 C -0.396 4.396 8 H 0.097 0.903 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.041 4.041 12 N -0.309 5.309 13 C 0.390 3.610 14 O -0.435 6.435 15 C -0.161 4.161 16 C -0.137 4.137 17 C -0.248 4.248 18 C -0.066 4.066 19 O -0.064 6.064 20 C 0.026 3.974 21 H 0.154 0.846 22 C -0.713 4.713 23 S 2.585 3.415 24 O -0.964 6.964 25 O -0.968 6.968 26 C -0.713 4.713 27 C 0.063 3.937 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.100 0.900 34 H 0.179 0.821 35 H 0.202 0.798 36 H 0.267 0.733 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 16.928 0.232 -8.390 18.894 hybrid contribution 0.146 1.639 0.097 1.648 sum 17.074 1.870 -8.293 19.073 Atomic orbital electron populations 1.69918 1.07548 1.27327 1.54642 1.26034 0.95676 1.01101 0.98891 0.86024 0.79008 0.80033 0.77780 1.19570 1.24894 1.17524 1.18953 0.82234 0.93922 1.44462 0.90258 1.44401 1.03661 1.36769 1.49007 1.21832 0.96439 0.92308 0.91352 1.22764 0.93879 0.92025 0.95435 1.47641 1.06418 1.33649 1.43220 1.17017 0.81486 0.81115 0.81398 1.90828 1.58260 1.43100 1.51352 1.21684 0.91558 1.04278 0.98596 1.22242 0.95164 0.98324 0.97977 1.22196 0.99682 1.02774 1.00196 1.25500 0.88762 0.96653 0.95652 1.84206 1.37074 1.47451 1.37676 1.22280 0.96181 0.89321 0.89576 0.84605 1.30755 1.13076 1.11077 1.16365 1.08524 0.75622 0.77230 0.80090 1.93548 1.79055 1.43871 1.79888 1.93587 1.33545 1.87760 1.81956 1.30759 1.11818 1.13886 1.14857 1.21177 0.91036 0.89774 0.91705 0.89825 0.92807 0.90640 0.93708 0.85631 0.90019 0.82075 0.79808 0.73316 0.83855 0.82472 0.81287 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.06 13.97 21.65 0.30 -55.76 16 2 C -0.02 -1.09 5.35 84.86 0.45 -0.63 16 3 Si 0.94 41.73 24.34 68.60 1.67 43.40 16 4 H -0.27 -11.05 6.80 99.48 0.68 -10.37 16 5 H -0.32 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.25 -10.39 5.98 99.48 0.60 -9.79 16 7 C -0.27 -13.17 8.74 84.03 0.73 -12.44 16 8 H 0.08 4.26 5.40 -2.91 -0.02 4.24 16 9 N -0.61 -24.35 2.54 -672.82 -1.71 -26.06 16 10 C 0.11 3.76 4.26 86.29 0.37 4.13 16 11 C 0.08 2.35 5.87 86.28 0.51 2.86 16 12 N -0.58 -16.91 2.67 -796.54 -2.13 -19.04 16 13 C 0.60 17.66 7.64 86.44 0.66 18.32 16 14 O -0.55 -18.66 16.28 -4.35 -0.07 -18.73 16 15 C -0.11 -2.69 6.77 24.07 0.16 -2.53 16 16 C -0.12 -2.34 10.63 22.39 0.24 -2.10 16 17 C -0.23 -3.10 10.88 22.07 0.24 -2.86 16 18 C 0.00 0.04 12.08 67.10 0.81 0.85 16 19 O -0.17 -3.40 7.21 -5.15 -0.04 -3.44 16 20 C 0.13 3.89 2.99 45.87 0.14 4.03 16 21 H 0.14 3.65 7.01 -2.39 -0.02 3.63 16 22 C -0.58 -16.37 6.63 72.60 0.48 -15.88 16 23 S 2.40 79.00 6.02 -56.49 -0.34 78.66 16 24 O -0.97 -33.98 18.14 -127.49 -2.31 -36.30 16 25 O -0.97 -41.62 17.40 -127.49 -2.22 -43.84 16 26 C -0.58 -18.17 6.18 72.37 0.45 -17.72 16 27 C 0.17 5.59 3.52 45.59 0.16 5.75 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.08 2.90 4.56 -2.39 -0.01 2.89 16 31 H 0.05 1.57 6.73 -2.38 -0.02 1.55 16 32 H 0.13 3.11 4.11 -30.61 -0.13 2.99 16 33 H 0.08 2.32 7.03 -2.38 -0.02 2.31 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.25 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.14 4.27 6.69 -2.39 -0.02 4.26 16 38 H 0.16 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.17 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.15 5.76 5.41 -2.39 -0.01 5.75 16 Total: -1.00 -76.47 323.84 -0.60 -77.07 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.85 Total: 22.27 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.40 Total: -18.23 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.54 Total: -100.86 kcal Atomic # 8 Polarization: -97.67 SS G_CDS: -4.64 Total: -102.31 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.67 Total: 43.40 kcal Atomic # 16 Polarization: 79.00 SS G_CDS: -0.34 Total: 78.66 kcal Total: -76.47 -0.60 -77.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094600312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds