Wall clock time and date at job start Sat Apr 11 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29430 * 121.49557 * 2 1 4 4 S 1.69450 * 108.06341 * 179.97438 * 3 2 1 5 5 C 1.72012 * 96.09861 * 359.97438 * 4 3 2 6 6 N 1.38194 * 127.35899 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00076 * 0.02806 * 6 5 4 8 8 H 1.08998 * 109.47174 * 34.99274 * 7 6 5 9 9 C 1.53003 * 109.47067 * 275.00189 * 7 6 5 10 10 C 1.52999 * 109.47535 * 155.00101 * 7 6 5 11 11 N 1.46506 * 109.46684 * 305.00097 * 10 7 6 12 12 C 1.34777 * 119.99873 * 180.02562 * 11 10 7 13 13 O 1.21284 * 119.99754 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00137 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47338 * 179.97438 * 14 12 11 16 16 C 1.76204 * 100.00333 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00282 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99837 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46963 * 60.00178 * 20 18 16 22 22 H 1.48502 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47564 * 300.00269 * 20 18 16 24 24 C 1.39017 * 105.28258 * 0.22659 * 5 4 3 25 25 C 1.43196 * 123.22552 * 179.75109 * 24 5 4 26 26 N 3.52971 * 84.00673 * 180.28950 * 2 1 3 27 27 H 1.09008 * 109.46677 * 90.02892 * 1 2 3 28 28 H 1.09000 * 109.47153 * 210.01861 * 1 2 3 29 29 H 1.08990 * 109.47371 * 330.02728 * 1 2 3 30 30 H 0.97002 * 119.99613 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47405 * 59.99433 * 9 7 6 32 32 H 1.08999 * 109.47145 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.46883 * 299.99559 * 9 7 6 34 34 H 1.09000 * 109.47486 * 185.00032 * 10 7 6 35 35 H 1.09001 * 109.47362 * 64.99309 * 10 7 6 36 36 H 0.96995 * 120.00050 * 359.72237 * 11 10 7 37 37 H 1.09004 * 109.47043 * 299.99732 * 14 12 11 38 38 H 1.09000 * 109.46978 * 59.99653 * 14 12 11 39 39 H 0.97002 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1832 1.1036 0.0000 4 16 3.8314 0.7100 0.0007 5 6 3.6118 -0.9960 0.0018 6 7 4.5942 -1.9680 0.0022 7 6 6.0072 -1.5812 0.0024 8 1 6.1353 -0.6732 0.5915 9 6 6.4661 -1.3257 -1.4346 10 6 6.8442 -2.7074 0.6124 11 7 6.3276 -3.0333 1.9440 12 6 6.9130 -4.0023 2.6754 13 8 7.8672 -4.6047 2.2308 14 6 6.3821 -4.3372 4.0453 15 16 7.3721 -5.6695 4.7670 16 6 6.5558 -5.8517 6.3179 17 1 5.7101 -5.2252 6.5599 18 6 7.0005 -6.7996 7.2291 19 7 8.0323 -7.5621 6.9348 20 14 6.1356 -6.9922 8.8735 21 1 4.7134 -7.3534 8.6454 22 1 6.7982 -8.0644 9.6587 23 1 6.2072 -5.7125 9.6234 24 6 2.2350 -1.1883 -0.0038 25 6 1.6236 -2.4832 -0.0100 26 7 1.1385 -3.5104 -0.0177 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8901 0.5133 30 1 4.3481 -2.9062 0.0025 31 1 5.8699 -0.5234 -1.8693 32 1 7.5176 -1.0384 -1.4346 33 1 6.3381 -2.2337 -2.0238 34 1 7.8823 -2.3852 0.6942 35 1 6.7866 -3.5894 -0.0255 36 1 5.5670 -2.5488 2.3012 37 1 6.4396 -3.4550 4.6830 38 1 5.3440 -4.6596 3.9638 39 1 8.3428 -8.2248 7.5715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097676624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:49 Heat of formation + Delta-G solvation = 21.552950 kcal Electronic energy + Delta-G solvation = -23335.486252 eV Core-core repulsion = 19723.757809 eV Total energy + Delta-G solvation = -3611.728443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11129 -39.46617 -37.95929 -36.44081 -34.52021 -32.55049 -32.46366 -30.10891 -29.81599 -29.43673 -26.27919 -25.45551 -24.18025 -22.44276 -20.96240 -20.53466 -19.44995 -18.31806 -17.72381 -16.73328 -16.43705 -16.30047 -15.75157 -15.58723 -15.08489 -14.83672 -14.36936 -14.14206 -13.97803 -13.70841 -13.52487 -13.27584 -13.24544 -13.15180 -13.07250 -12.78176 -12.72987 -12.67908 -12.49840 -11.94898 -11.76613 -11.60647 -11.38763 -11.08879 -11.06288 -10.87660 -10.80207 -9.87618 -9.58803 -9.17744 -9.08313 -9.06695 -8.49437 -8.31052 -6.55690 -6.25513 -3.96942 0.31667 0.56536 1.34223 1.48803 2.32023 2.45654 2.87700 2.93026 3.17023 3.21521 3.24385 3.27365 3.56522 3.83070 3.93581 4.16674 4.17993 4.35595 4.49291 4.76330 4.86087 4.98931 5.03946 5.09060 5.09863 5.11551 5.11996 5.22062 5.38038 5.55654 5.62550 5.63119 5.79153 5.95940 6.05357 6.25170 6.33077 6.52700 7.32553 7.45475 7.55838 8.31176 8.41776 9.19919 10.81867 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002452 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.734542 B =11416.320540 C =12657.544655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.203 3.797 3 N -0.487 5.487 4 S 0.276 5.724 5 C 0.171 3.829 6 N -0.669 5.669 7 C 0.124 3.876 8 H 0.098 0.902 9 C -0.170 4.170 10 C 0.113 3.887 11 N -0.743 5.743 12 C 0.534 3.466 13 O -0.513 6.513 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.233 4.233 25 C 0.283 3.717 26 N -0.425 5.425 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.416 0.584 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 19.972 -18.112 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.024 3.976 3 N -0.308 5.308 4 S 0.421 5.579 5 C -0.071 4.071 6 N -0.298 5.298 7 C 0.020 3.980 8 H 0.116 0.884 9 C -0.229 4.229 10 C -0.011 4.011 11 N -0.399 5.399 12 C 0.320 3.680 13 O -0.386 6.386 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.258 4.258 25 C -0.033 4.033 26 N -0.102 5.102 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.224 19.321 -18.807 27.915 hybrid contribution -2.736 -0.884 1.749 3.366 sum -9.960 18.438 -17.058 27.021 Atomic orbital electron populations 1.20670 0.86197 1.04361 1.04115 1.20798 0.98430 0.86338 0.91994 1.76462 0.98544 1.24370 1.31451 1.84347 1.11871 0.89587 1.72138 1.23433 0.91258 0.99087 0.93321 1.44278 1.03353 1.07162 1.74961 1.21744 0.78407 0.99249 0.98604 0.88372 1.22244 1.02885 1.03367 0.94369 1.21592 0.98114 0.97006 0.84419 1.46018 1.36270 1.40152 1.17493 1.20345 0.82731 0.78397 0.86490 1.90719 1.26409 1.49983 1.71520 1.23538 1.05325 1.06359 0.95308 1.85378 1.40827 1.39707 1.17248 1.22816 1.19094 1.24497 1.02117 0.90957 1.24990 0.95053 0.94693 0.98787 1.70004 1.23599 1.20626 1.36050 0.86217 0.79469 0.78043 0.81750 1.19909 1.20765 1.19887 1.15687 0.89118 0.89171 1.31869 1.24519 0.94118 0.91705 0.92986 1.81349 1.06979 1.10451 1.11408 0.89290 0.90145 0.89411 0.74498 0.91231 0.89888 0.91153 0.89054 0.90432 0.76687 0.89104 0.89230 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 9.95 36.01 0.36 -0.18 16 2 C 0.20 1.63 6.75 -83.19 -0.56 1.07 16 3 N -0.49 -4.23 11.95 32.62 0.39 -3.84 16 4 S 0.28 1.81 22.57 -107.50 -2.43 -0.61 16 5 C 0.17 1.20 7.27 -14.39 -0.10 1.10 16 6 N -0.67 -4.11 4.65 -53.30 -0.25 -4.36 16 7 C 0.12 0.64 2.76 -67.93 -0.19 0.45 16 8 H 0.10 0.42 7.42 -51.93 -0.39 0.04 16 9 C -0.17 -0.66 9.50 37.16 0.35 -0.31 16 10 C 0.11 0.93 5.23 -4.04 -0.02 0.91 16 11 N -0.74 -8.26 5.39 -60.29 -0.32 -8.59 16 12 C 0.53 9.14 7.85 -10.99 -0.09 9.05 16 13 O -0.51 -10.81 15.86 5.55 0.09 -10.72 16 14 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 20 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 C -0.23 -1.96 5.76 -107.27 -0.62 -2.58 16 25 C 0.28 2.93 14.06 -22.47 -0.32 2.61 16 26 N -0.42 -5.44 18.54 41.84 0.78 -4.66 16 27 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.48 7.40 -51.93 -0.38 0.10 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.42 2.90 8.32 -40.82 -0.34 2.56 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 3.63 8.14 -40.82 -0.33 3.30 16 37 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -35.57 374.58 -8.16 -43.73 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.79 Total: -0.37 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.76 Total: -3.53 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.33 Total: -46.71 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -4.64 Total: -4.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.57 -8.16 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097676624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.284 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds