Wall clock time and date at job start Sat Apr 11 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29430 * 121.49557 * 2 1 4 4 S 1.69450 * 108.06341 * 179.97438 * 3 2 1 5 5 C 1.72012 * 96.09861 * 359.97438 * 4 3 2 6 6 N 1.38194 * 127.35899 * 179.97438 * 5 4 3 7 7 C 1.46496 * 120.00076 * 0.02806 * 6 5 4 8 8 H 1.08998 * 109.47174 * 34.99274 * 7 6 5 9 9 C 1.53003 * 109.47067 * 275.00189 * 7 6 5 10 10 C 1.52999 * 109.47535 * 155.00101 * 7 6 5 11 11 N 1.46506 * 109.46684 * 305.00097 * 10 7 6 12 12 C 1.34777 * 119.99873 * 180.02562 * 11 10 7 13 13 O 1.21284 * 119.99754 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00137 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47338 * 179.97438 * 14 12 11 16 16 C 1.76204 * 100.00333 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00282 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99837 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00084 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46963 * 60.00178 * 20 18 16 22 22 H 1.48502 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47564 * 300.00269 * 20 18 16 24 24 C 1.39017 * 105.28258 * 0.22659 * 5 4 3 25 25 C 1.43196 * 123.22552 * 179.75109 * 24 5 4 26 26 N 3.52971 * 84.00673 * 180.28950 * 2 1 3 27 27 H 1.09008 * 109.46677 * 90.02892 * 1 2 3 28 28 H 1.09000 * 109.47153 * 210.01861 * 1 2 3 29 29 H 1.08990 * 109.47371 * 330.02728 * 1 2 3 30 30 H 0.97002 * 119.99613 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47405 * 59.99433 * 9 7 6 32 32 H 1.08999 * 109.47145 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.46883 * 299.99559 * 9 7 6 34 34 H 1.09000 * 109.47486 * 185.00032 * 10 7 6 35 35 H 1.09001 * 109.47362 * 64.99309 * 10 7 6 36 36 H 0.96995 * 120.00050 * 359.72237 * 11 10 7 37 37 H 1.09004 * 109.47043 * 299.99732 * 14 12 11 38 38 H 1.09000 * 109.46978 * 59.99653 * 14 12 11 39 39 H 0.97002 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1832 1.1036 0.0000 4 16 3.8314 0.7100 0.0007 5 6 3.6118 -0.9960 0.0018 6 7 4.5942 -1.9680 0.0022 7 6 6.0072 -1.5812 0.0024 8 1 6.1353 -0.6732 0.5915 9 6 6.4661 -1.3257 -1.4346 10 6 6.8442 -2.7074 0.6124 11 7 6.3276 -3.0333 1.9440 12 6 6.9130 -4.0023 2.6754 13 8 7.8672 -4.6047 2.2308 14 6 6.3821 -4.3372 4.0453 15 16 7.3721 -5.6695 4.7670 16 6 6.5558 -5.8517 6.3179 17 1 5.7101 -5.2252 6.5599 18 6 7.0005 -6.7996 7.2291 19 7 8.0323 -7.5621 6.9348 20 14 6.1356 -6.9922 8.8735 21 1 4.7134 -7.3534 8.6454 22 1 6.7982 -8.0644 9.6587 23 1 6.2072 -5.7125 9.6234 24 6 2.2350 -1.1883 -0.0038 25 6 1.6236 -2.4832 -0.0100 26 7 1.1385 -3.5104 -0.0177 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8901 0.5133 30 1 4.3481 -2.9062 0.0025 31 1 5.8699 -0.5234 -1.8693 32 1 7.5176 -1.0384 -1.4346 33 1 6.3381 -2.2337 -2.0238 34 1 7.8823 -2.3852 0.6942 35 1 6.7866 -3.5894 -0.0255 36 1 5.5670 -2.5488 2.3012 37 1 6.4396 -3.4550 4.6830 38 1 5.3440 -4.6596 3.9638 39 1 8.3428 -8.2248 7.5715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097676624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:48 Heat of formation + Delta-G solvation = -4.028142 kcal Electronic energy + Delta-G solvation = -23336.595531 eV Core-core repulsion = 19723.757809 eV Total energy + Delta-G solvation = -3612.837722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93627 -40.43210 -38.72037 -37.28210 -35.50515 -34.60760 -33.29663 -31.03679 -30.64121 -30.11946 -27.76828 -26.91215 -24.80965 -22.99980 -21.82768 -21.56067 -20.05617 -19.87759 -18.75838 -17.79775 -17.39537 -17.26152 -16.89897 -16.55062 -16.32613 -16.10058 -15.87377 -14.94348 -14.80226 -14.66623 -14.43298 -14.29195 -14.29028 -14.05513 -14.01190 -13.67953 -13.35666 -13.28465 -13.20359 -13.19693 -12.96082 -12.88896 -12.65612 -12.28459 -12.16626 -11.92544 -11.76281 -11.45317 -11.15328 -11.03152 -10.31855 -10.23578 -9.63094 -9.06817 -8.68993 -8.37145 -6.15091 -0.26651 0.00098 0.77392 0.84594 1.23877 1.41787 1.44029 1.53632 1.54870 1.67037 1.77855 2.20747 2.25821 2.40991 2.97097 3.12131 3.28428 3.35116 3.60858 3.85643 3.93887 4.07430 4.15987 4.24423 4.36715 4.47018 4.50485 4.58826 4.68827 4.70646 4.76709 4.81383 5.18542 5.24468 5.33111 5.39223 5.45151 5.68868 5.93011 6.17040 6.36061 6.54839 7.04416 7.15035 8.71713 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002452 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.734542 B =11416.320540 C =12657.544655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.204 3.796 3 N -0.514 5.514 4 S 0.314 5.686 5 C 0.178 3.822 6 N -0.665 5.665 7 C 0.134 3.866 8 H 0.117 0.883 9 C -0.168 4.168 10 C 0.111 3.889 11 N -0.717 5.717 12 C 0.538 3.462 13 O -0.558 6.558 14 C -0.134 4.134 15 S -0.146 6.146 16 C -0.549 4.549 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.996 3.004 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.251 4.251 25 C 0.306 3.694 26 N -0.475 5.475 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.413 0.587 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 22.319 -18.209 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.025 3.975 3 N -0.335 5.335 4 S 0.458 5.542 5 C -0.065 4.065 6 N -0.293 5.293 7 C 0.030 3.970 8 H 0.134 0.866 9 C -0.226 4.226 10 C -0.013 4.013 11 N -0.371 5.371 12 C 0.323 3.677 13 O -0.436 6.436 14 C -0.285 4.285 15 S 0.081 5.919 16 C -0.697 4.697 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.818 3.182 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.276 4.276 25 C -0.009 4.009 26 N -0.154 5.154 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.251 0.749 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.249 0.751 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.181 21.720 -18.932 29.951 hybrid contribution -2.416 -1.471 1.652 3.276 sum -10.597 20.248 -17.279 28.651 Atomic orbital electron populations 1.20746 0.85202 1.04559 1.04951 1.20965 0.99240 0.85938 0.91348 1.76381 0.99930 1.24912 1.32287 1.84200 1.10392 0.88166 1.71394 1.23501 0.90869 0.99762 0.92416 1.44394 1.03683 1.06973 1.74207 1.21781 0.77188 0.98372 0.99679 0.86568 1.22251 1.03915 1.03512 0.92954 1.21807 0.99027 0.97998 0.82433 1.45729 1.35551 1.37923 1.17926 1.19933 0.82417 0.79319 0.85999 1.90711 1.28549 1.52077 1.72255 1.23391 1.04358 1.03965 0.96777 1.85505 1.43929 1.44030 1.18427 1.23164 1.19258 1.24786 1.02459 0.90102 1.26099 0.95712 0.94145 1.03069 1.70166 1.25389 1.21461 1.37615 0.85035 0.78305 0.78472 0.76403 1.18913 1.20295 1.18537 1.15760 0.89760 0.88420 1.33695 1.24732 0.92966 0.91601 0.91561 1.81366 1.08522 1.11951 1.13549 0.88121 0.90544 0.88561 0.74868 0.90434 0.88470 0.91529 0.88536 0.90940 0.75084 0.87173 0.87856 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.95 71.24 0.71 -0.28 16 2 C 0.20 2.95 6.75 43.18 0.29 3.24 16 3 N -0.51 -7.88 11.95 -50.70 -0.61 -8.49 16 4 S 0.31 3.26 22.57 -56.49 -1.27 1.98 16 5 C 0.18 2.08 7.27 83.88 0.61 2.69 16 6 N -0.66 -6.56 4.65 -322.53 -1.50 -8.06 16 7 C 0.13 0.97 2.76 44.99 0.12 1.10 16 8 H 0.12 0.52 7.42 -2.39 -0.02 0.50 16 9 C -0.17 -0.79 9.50 71.98 0.68 -0.11 16 10 C 0.11 1.57 5.23 86.38 0.45 2.03 16 11 N -0.72 -14.42 5.39 -463.05 -2.49 -16.91 16 12 C 0.54 17.94 7.85 87.66 0.69 18.62 16 13 O -0.56 -23.72 15.86 -3.04 -0.05 -23.77 16 14 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 15 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 16 C -0.55 -31.18 9.50 67.95 0.65 -30.54 16 17 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 18 C 0.01 0.84 5.49 84.86 0.47 1.30 16 19 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 20 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 C -0.25 -3.83 5.76 -21.58 -0.12 -3.96 16 25 C 0.31 6.15 14.06 88.33 1.24 7.39 16 26 N -0.48 -12.18 18.54 19.00 0.35 -11.83 16 27 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.08 0.86 7.40 -2.39 -0.02 0.85 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.41 4.97 8.32 -92.71 -0.77 4.20 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 6.30 8.14 -92.71 -0.75 5.54 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -79.64 374.58 1.40 -78.25 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -0.41 Total: 10.88 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.23 Total: -3.16 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -3.96 Total: -100.63 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.44 Total: -7.14 kcal Total: -79.64 1.40 -78.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097676624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.219 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds