Wall clock time and date at job start Sat Apr 11 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29439 * 121.48848 * 2 1 4 4 S 1.69451 * 108.05676 * 180.02562 * 3 2 1 5 5 C 1.72007 * 96.10169 * 359.97438 * 4 3 2 6 6 N 1.38193 * 127.35904 * 179.97438 * 5 4 3 7 7 C 1.46491 * 120.00323 * 0.02562 * 6 5 4 8 8 H 1.08999 * 109.47438 * 325.00120 * 7 6 5 9 9 C 1.53001 * 109.46969 * 84.99933 * 7 6 5 10 10 C 1.53003 * 109.47746 * 205.00090 * 7 6 5 11 11 N 1.46499 * 109.46708 * 54.99751 * 10 7 6 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 7 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 S 1.81008 * 109.46759 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99946 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99996 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00252 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99702 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47239 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47003 * 120.00084 * 20 18 16 23 23 H 1.48500 * 109.46787 * 239.99933 * 20 18 16 24 24 C 1.39013 * 105.28352 * 0.22771 * 5 4 3 25 25 C 1.43196 * 123.22924 * 179.74525 * 24 5 4 26 26 N 3.52960 * 84.00862 * 180.29355 * 2 1 3 27 27 H 1.08996 * 109.46925 * 89.97430 * 1 2 3 28 28 H 1.08996 * 109.46313 * 209.97138 * 1 2 3 29 29 H 1.08999 * 109.46929 * 329.96844 * 1 2 3 30 30 H 0.97006 * 119.99873 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47112 * 179.97438 * 9 7 6 32 32 H 1.08995 * 109.47237 * 300.00242 * 9 7 6 33 33 H 1.08997 * 109.47076 * 60.00791 * 9 7 6 34 34 H 1.08998 * 109.46692 * 295.00253 * 10 7 6 35 35 H 1.08994 * 109.47584 * 175.00117 * 10 7 6 36 36 H 0.97005 * 120.00261 * 0.02562 * 11 10 7 37 37 H 1.09001 * 109.46809 * 299.99238 * 14 12 11 38 38 H 1.08993 * 109.47525 * 59.99679 * 14 12 11 39 39 H 0.97000 * 119.99806 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1832 1.1038 0.0000 4 16 3.8313 0.7102 -0.0007 5 6 3.6119 -0.9958 -0.0003 6 7 4.5943 -1.9677 -0.0010 7 6 6.0073 -1.5810 -0.0018 8 1 6.1352 -0.6730 -0.5912 9 6 6.4668 -1.3253 1.4349 10 6 6.8441 -2.7071 -0.6122 11 7 6.3270 -3.0332 -1.9435 12 6 6.9115 -4.0029 -2.6746 13 8 7.8654 -4.6058 -2.2301 14 6 6.3757 -4.3425 -4.0416 15 16 7.3657 -5.6747 -4.7637 16 6 6.5428 -5.8637 -6.3102 17 1 5.6939 -5.2406 -6.5498 18 6 6.9855 -6.8134 -7.2205 19 7 8.0205 -7.5725 -6.9286 20 14 6.1135 -7.0132 -8.8603 21 1 4.9890 -6.0469 -8.9440 22 1 7.0716 -6.7553 -9.9651 23 1 5.5862 -8.3967 -8.9752 24 6 2.2351 -1.1882 -0.0049 25 6 1.6237 -2.4831 -0.0114 26 7 1.1387 -3.5103 -0.0180 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3632 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 4.3483 -2.9060 -0.0011 31 1 7.5183 -1.0380 1.4344 32 1 5.8708 -0.5230 1.8698 33 1 6.3391 -2.2333 2.0243 34 1 6.7869 -3.5890 0.0258 35 1 7.8821 -2.3849 -0.6945 36 1 5.5638 -2.5512 -2.2989 37 1 5.3387 -4.6669 -3.9550 38 1 6.4288 -3.4619 -4.6817 39 1 8.3297 -8.2365 -7.5646 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097676625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:52 Heat of formation + Delta-G solvation = 21.483514 kcal Electronic energy + Delta-G solvation = -23338.641973 eV Core-core repulsion = 19726.910519 eV Total energy + Delta-G solvation = -3611.731454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.11153 -39.46607 -37.95951 -36.44062 -34.52025 -32.55092 -32.46551 -30.10857 -29.81649 -29.43671 -26.27968 -25.45991 -24.18072 -22.44253 -20.96235 -20.53480 -19.45003 -18.31948 -17.72620 -16.73088 -16.43806 -16.30168 -15.75579 -15.58370 -15.08367 -14.84027 -14.37861 -14.13695 -13.98358 -13.70678 -13.51763 -13.28422 -13.24088 -13.14825 -13.07093 -12.78875 -12.73193 -12.68025 -12.50046 -11.94992 -11.76204 -11.60854 -11.38880 -11.09756 -11.06589 -10.87539 -10.79184 -9.85825 -9.58883 -9.18028 -9.09823 -9.06680 -8.49467 -8.30332 -6.55839 -6.26098 -3.97239 0.31640 0.56542 1.34423 1.48685 2.32005 2.45741 2.87746 2.92851 3.17089 3.19274 3.24579 3.29281 3.56618 3.83120 3.93564 4.16131 4.17923 4.35655 4.49292 4.76346 4.85669 4.98884 5.03898 5.08795 5.09555 5.11800 5.12749 5.22006 5.38000 5.55661 5.62405 5.63049 5.79123 5.95943 6.05342 6.25100 6.33064 6.52634 7.32616 7.45387 7.56246 8.31337 8.41714 9.19703 10.81399 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.002456 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.804344 B =11396.873651 C =12649.390794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.203 3.797 3 N -0.487 5.487 4 S 0.276 5.724 5 C 0.171 3.829 6 N -0.669 5.669 7 C 0.124 3.876 8 H 0.098 0.902 9 C -0.170 4.170 10 C 0.114 3.886 11 N -0.743 5.743 12 C 0.534 3.466 13 O -0.513 6.513 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.233 4.233 25 C 0.283 3.717 26 N -0.424 5.424 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.416 0.584 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 20.013 18.090 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.024 3.976 3 N -0.308 5.308 4 S 0.421 5.579 5 C -0.071 4.071 6 N -0.298 5.298 7 C 0.020 3.980 8 H 0.116 0.884 9 C -0.229 4.229 10 C -0.011 4.011 11 N -0.399 5.399 12 C 0.320 3.680 13 O -0.386 6.386 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.258 4.258 25 C -0.033 4.033 26 N -0.102 5.102 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.255 0.745 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.213 19.375 18.763 27.919 hybrid contribution -2.731 -0.909 -1.747 3.367 sum -9.944 18.465 17.017 27.008 Atomic orbital electron populations 1.20671 0.86196 1.04208 1.04266 1.20802 0.98432 0.86341 0.91992 1.76467 0.98542 1.24358 1.31459 1.84346 1.11875 0.89587 1.72131 1.23430 0.91257 0.99088 0.93327 1.44278 1.03355 1.07162 1.74969 1.21744 0.78407 0.99251 0.98605 0.88371 1.22243 1.02882 1.03368 0.94371 1.21590 0.98117 0.97001 0.84419 1.46021 1.36096 1.40263 1.17560 1.20348 0.82765 0.78382 0.86468 1.90719 1.26482 1.49984 1.71441 1.23536 1.05290 1.06322 0.95359 1.85386 1.40500 1.39705 1.17651 1.22896 1.18715 1.24431 1.02322 0.90858 1.25000 0.95079 0.94718 0.98788 1.70025 1.23586 1.20735 1.35920 0.86106 0.79269 0.78212 0.81863 1.19588 1.20509 1.20532 1.15684 0.89120 0.89172 1.31865 1.24517 0.94123 0.91706 0.92992 1.81348 1.06976 1.10452 1.11395 0.89162 0.90217 0.89463 0.74501 0.89890 0.91229 0.91151 0.90443 0.89045 0.76687 0.89221 0.89111 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 9.95 36.01 0.36 -0.18 16 2 C 0.20 1.63 6.75 -83.18 -0.56 1.07 16 3 N -0.49 -4.23 11.95 32.62 0.39 -3.84 16 4 S 0.28 1.82 22.57 -107.50 -2.43 -0.61 16 5 C 0.17 1.20 7.27 -14.39 -0.10 1.10 16 6 N -0.67 -4.11 4.65 -53.30 -0.25 -4.36 16 7 C 0.12 0.64 2.76 -67.93 -0.19 0.45 16 8 H 0.10 0.42 7.42 -51.93 -0.39 0.04 16 9 C -0.17 -0.66 9.50 37.16 0.35 -0.31 16 10 C 0.11 0.93 5.23 -4.04 -0.02 0.91 16 11 N -0.74 -8.27 5.39 -60.30 -0.32 -8.60 16 12 C 0.53 9.14 7.85 -10.98 -0.09 9.05 16 13 O -0.51 -10.81 15.86 5.56 0.09 -10.72 16 14 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 20 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.23 -1.96 5.76 -107.27 -0.62 -2.58 16 25 C 0.28 2.93 14.06 -22.47 -0.32 2.62 16 26 N -0.42 -5.44 18.54 41.84 0.78 -4.67 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.46 7.40 -51.93 -0.38 0.07 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.42 2.90 8.32 -40.82 -0.34 2.56 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.64 8.14 -40.82 -0.33 3.31 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -35.61 374.57 -8.16 -43.77 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.79 Total: -0.44 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.76 Total: -3.49 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.33 Total: -46.71 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -4.64 Total: -4.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.61 -8.16 -43.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097676625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.252 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds