Wall clock time and date at job start Sat Apr 11 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99925 * 2 1 4 4 H 1.48495 * 109.46941 * 239.99738 * 3 2 1 5 5 H 1.48495 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46812 * 119.99992 * 3 2 1 7 7 C 1.37880 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 C 1.76193 * 104.44909 * 179.97438 * 11 10 9 15 15 C 1.38358 * 119.85503 * 269.72729 * 14 11 10 16 16 C 1.37959 * 120.14589 * 179.72319 * 15 14 11 17 17 C 1.39578 * 119.85289 * 0.55128 * 16 15 14 18 18 C 1.47843 * 120.14348 * 179.70243 * 17 16 15 19 19 O 1.21561 * 119.99761 * 180.02562 * 18 17 16 20 20 N 1.34772 * 120.00396 * 0.02562 * 18 17 16 21 21 C 1.46496 * 120.00442 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47594 * 179.97438 * 21 20 18 23 23 N 1.34777 * 120.00504 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99729 * 0.02562 * 22 21 20 25 25 C 1.39573 * 119.70765 * 359.72069 * 17 16 15 26 26 C 1.37958 * 119.85913 * 0.02562 * 25 17 16 27 27 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 29 29 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 30 30 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 31 31 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 32 32 H 1.07999 * 119.92665 * 0.02562 * 15 14 11 33 33 H 1.08005 * 120.07283 * 180.24815 * 16 15 14 34 34 H 0.97006 * 120.00016 * 0.02562 * 20 18 17 35 35 H 1.09004 * 109.47245 * 300.00441 * 21 20 18 36 36 H 1.09004 * 109.46907 * 59.99987 * 21 20 18 37 37 H 0.97006 * 119.99435 * 0.02562 * 23 22 21 38 38 H 0.96997 * 120.00188 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.06869 * 179.97438 * 25 17 16 40 40 H 1.07990 * 119.93198 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4194 1.2386 14 6 2.5961 -6.4669 0.0005 15 6 3.0829 -6.9534 -1.1998 16 6 4.0718 -7.9154 -1.2075 17 6 4.5730 -8.4062 -0.0008 18 6 5.6281 -9.4419 -0.0016 19 8 6.0623 -9.8678 1.0509 20 7 6.1084 -9.9138 -1.1690 21 6 7.1542 -10.9396 -1.1698 22 6 7.5115 -11.2919 -2.5908 23 7 8.4568 -12.2202 -2.8378 24 8 6.9482 -10.7400 -3.5123 25 6 4.0735 -7.9152 1.2065 26 6 3.0884 -6.9495 1.2002 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 2.6914 -6.5757 -2.1328 33 1 4.4538 -8.2914 -2.1452 34 1 5.7621 -9.5736 -2.0089 35 1 8.0372 -10.5587 -0.6565 36 1 6.7907 -11.8294 -0.6557 37 1 8.9070 -12.6619 -2.1007 38 1 8.6865 -12.4472 -3.7524 39 1 4.4569 -8.2912 2.1436 40 1 2.7008 -6.5691 2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116018864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:18 Heat of formation + Delta-G solvation = -155.412904 kcal Electronic energy + Delta-G solvation = -25785.502275 eV Core-core repulsion = 21691.054394 eV Total energy + Delta-G solvation = -4094.447880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60636 -40.50478 -39.38107 -38.13606 -36.97463 -35.86699 -35.76769 -34.79410 -33.11853 -32.85972 -32.20835 -29.05749 -27.57426 -25.43581 -23.88715 -23.46254 -22.01015 -21.76586 -20.05973 -19.72573 -19.05519 -18.45864 -18.21249 -17.36031 -17.27635 -16.99390 -16.90627 -16.73121 -16.49311 -16.06006 -15.76034 -15.74584 -15.34295 -15.07379 -14.67827 -14.48351 -14.32347 -14.11862 -14.02324 -13.70025 -13.59721 -13.14347 -13.06290 -12.88193 -12.77872 -12.37132 -12.19609 -12.15877 -12.05530 -11.66901 -11.36220 -11.29369 -11.06493 -10.76862 -10.60589 -10.60510 -10.29267 -10.20908 -8.22979 -6.36421 -0.98910 -0.68831 0.15729 1.41164 1.43606 1.46531 1.46949 1.54572 1.71505 1.99946 2.40229 2.47386 2.55788 2.92739 3.10542 3.14875 3.43352 3.62499 3.78361 3.86472 4.05441 4.07196 4.15602 4.28720 4.31414 4.32858 4.44763 4.79018 4.81520 4.87206 4.93782 5.03677 5.07440 5.31690 5.32774 5.58969 5.71595 5.79660 6.08863 6.22360 6.32142 6.77070 6.89301 7.20097 7.33341 8.88790 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017234 B = 0.002152 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.322144 B =13008.963318 C =13591.649008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.017 3.983 10 C -0.562 4.562 11 S 2.492 3.508 12 O -0.972 6.972 13 O -0.974 6.974 14 C -0.631 4.631 15 C -0.038 4.038 16 C -0.097 4.097 17 C -0.095 4.095 18 C 0.565 3.435 19 O -0.556 6.556 20 N -0.708 5.708 21 C 0.095 3.905 22 C 0.515 3.485 23 N -0.827 5.827 24 O -0.584 6.584 25 C -0.083 4.083 26 C -0.038 4.038 27 H 0.267 0.733 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.422 0.578 38 H 0.413 0.587 39 H 0.156 0.844 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.895 -25.519 -3.322 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.694 4.694 11 S 2.679 3.321 12 O -0.969 6.969 13 O -0.971 6.971 14 C -0.719 4.719 15 C -0.057 4.057 16 C -0.117 4.117 17 C -0.098 4.098 18 C 0.353 3.647 19 O -0.436 6.436 20 N -0.363 5.363 21 C -0.032 4.032 22 C 0.299 3.701 23 N -0.392 5.392 24 O -0.464 6.464 25 C -0.102 4.102 26 C -0.057 4.057 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.257 0.743 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.254 0.746 38 H 0.246 0.754 39 H 0.174 0.826 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 18.743 -25.519 -3.058 31.810 hybrid contribution 0.791 0.769 -0.388 1.170 sum 19.534 -24.751 -3.446 31.718 Atomic orbital electron populations 1.70092 1.07971 1.28315 1.50832 1.26089 0.95851 1.03762 0.94510 0.85389 0.78129 0.77480 0.79403 1.18833 1.21144 1.18860 1.21482 0.94047 0.90671 1.51513 0.90487 1.18895 0.93684 0.92686 0.96883 1.30074 1.12388 1.13818 1.13151 1.05374 0.76155 0.77187 0.73429 1.93487 1.72143 1.85878 1.45441 1.93487 1.72225 1.85891 1.45497 1.30675 1.20863 1.19942 1.00453 1.21216 0.93186 0.94095 0.97210 1.21691 0.95780 0.96011 0.98183 1.20276 0.97156 0.97237 0.95143 1.18141 0.81619 0.81442 0.83529 1.90787 1.60568 1.60262 1.31969 1.45604 1.40119 1.41393 1.09228 1.21300 0.93558 0.94047 0.94265 1.20569 0.79426 0.79265 0.90790 1.43575 1.40161 1.41420 1.13997 1.90772 1.54205 1.54172 1.47246 1.21512 0.94952 0.95079 0.98678 1.21184 0.93139 0.94087 0.97310 0.92448 0.97019 0.97074 0.83348 0.83220 0.82101 0.81697 0.74332 0.86282 0.86303 0.74574 0.75446 0.82631 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.02 0.87 4.98 29.85 0.15 1.01 16 10 C -0.56 -20.12 5.92 71.99 0.43 -19.69 16 11 S 2.49 85.85 5.16 -56.49 -0.29 85.56 16 12 O -0.97 -38.58 17.10 -127.65 -2.18 -40.77 16 13 O -0.97 -39.07 17.11 -127.65 -2.18 -41.26 16 14 C -0.63 -16.81 5.66 22.33 0.13 -16.68 16 15 C -0.04 -0.87 9.45 22.23 0.21 -0.66 16 16 C -0.10 -1.80 9.54 22.53 0.21 -1.58 16 17 C -0.10 -1.94 5.87 -20.09 -0.12 -2.05 16 18 C 0.57 10.94 7.77 86.79 0.67 11.61 16 19 O -0.56 -13.45 16.35 -3.91 -0.06 -13.52 16 20 N -0.71 -9.99 5.48 -469.71 -2.57 -12.56 16 21 C 0.09 0.81 6.15 85.63 0.53 1.33 16 22 C 0.52 4.91 8.17 87.66 0.72 5.63 16 23 N -0.83 -1.14 8.87 -173.53 -1.54 -2.68 16 24 O -0.58 -10.88 16.50 -3.04 -0.05 -10.93 16 25 C -0.08 -1.80 9.60 22.53 0.22 -1.58 16 26 C -0.04 -0.93 9.45 22.23 0.21 -0.72 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 31 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.16 3.27 7.55 -2.91 -0.02 3.25 16 33 H 0.17 2.00 6.41 -2.91 -0.02 1.98 16 34 H 0.42 5.60 5.47 -92.70 -0.51 5.09 16 35 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.42 -2.13 8.83 -92.70 -0.82 -2.95 16 38 H 0.41 0.24 8.93 -92.71 -0.83 -0.59 16 39 H 0.16 3.02 7.65 -2.91 -0.02 3.00 16 40 H 0.16 3.52 7.56 -2.92 -0.02 3.49 16 Total: -1.00 -84.96 365.16 -3.55 -88.52 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -1.03 Total: 10.57 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 4.05 Total: -52.00 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -3.83 Total: -70.99 kcal Atomic # 8 Polarization: -101.98 SS G_CDS: -4.48 Total: -106.47 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 85.85 SS G_CDS: -0.29 Total: 85.56 kcal Total: -84.96 -3.55 -88.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116018864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.896 kcal (2) G-P(sol) polarization free energy of solvation -84.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds