Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48496 * 109.46999 * 269.99899 * 3 2 1 5 5 H 1.48497 * 109.47185 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46802 * 149.99684 * 3 2 1 7 7 C 1.37878 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99467 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46991 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46986 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99860 * 179.97438 * 11 10 9 13 13 O 1.21558 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.47841 * 120.00158 * 179.97438 * 12 11 10 15 15 C 1.39575 * 120.14653 * 180.02562 * 14 12 11 16 16 C 1.37960 * 119.85869 * 180.02562 * 15 14 12 17 17 C 1.38364 * 120.14068 * 0.02562 * 16 15 14 18 18 S 1.76193 * 119.85355 * 179.97438 * 17 16 15 19 19 O 1.42105 * 104.27847 * 206.07375 * 18 17 16 20 20 O 1.42101 * 104.27778 * 333.93045 * 18 17 16 21 21 C 1.81397 * 104.44909 * 90.00208 * 18 17 16 22 22 C 1.50700 * 109.47317 * 179.97438 * 21 18 17 23 23 N 1.34778 * 120.00205 * 179.97438 * 22 21 18 24 24 O 1.21284 * 119.99762 * 0.02562 * 22 21 18 25 25 C 1.38365 * 120.29353 * 0.23442 * 17 16 15 26 26 C 1.37963 * 120.14041 * 359.48881 * 25 17 16 27 27 H 0.97003 * 120.00232 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47486 * 60.00000 * 9 7 2 29 29 H 1.08999 * 109.47094 * 299.99307 * 9 7 2 30 30 H 1.08993 * 109.47050 * 59.99679 * 10 9 7 31 31 H 1.08999 * 109.46592 * 299.99561 * 10 9 7 32 32 H 0.96996 * 119.99982 * 359.97438 * 11 10 9 33 33 H 1.08004 * 120.07456 * 0.02562 * 15 14 12 34 34 H 1.07994 * 119.93412 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.47032 * 299.99903 * 21 18 17 36 36 H 1.09000 * 109.47124 * 60.00175 * 21 18 17 37 37 H 0.96995 * 120.00010 * 359.97438 * 23 22 21 38 38 H 0.97000 * 119.99918 * 180.02562 * 23 22 21 39 39 H 1.07989 * 119.92960 * 179.74255 * 25 17 16 40 40 H 1.08005 * 120.06989 * 180.25002 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1867 -6.0979 0.0031 13 8 3.4023 -6.0979 0.0036 14 6 1.4476 -7.3783 0.0043 15 6 2.1424 -8.5888 0.0055 16 6 1.4467 -9.7801 0.0060 17 6 0.0630 -9.7766 0.0049 18 16 -0.8179 -11.3025 0.0050 19 8 -2.0639 -10.9879 -0.6015 20 8 0.0787 -12.2248 -0.5990 21 6 -1.0457 -11.6936 1.7616 22 6 -1.7969 -12.9933 1.8936 23 7 -2.0822 -13.4857 3.1153 24 8 -2.1440 -13.5966 0.9004 25 6 -0.6319 -8.5802 -0.0017 26 6 0.0518 -7.3819 0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8726 -3.6047 -0.8878 32 1 0.5429 -4.9307 0.0024 33 1 3.2225 -8.5929 0.0059 34 1 1.9831 -10.7174 0.0074 35 1 -0.0718 -11.7859 2.2425 36 1 -1.6134 -10.8959 2.2407 37 1 -1.8036 -13.0038 3.9097 38 1 -2.5654 -14.3225 3.2003 39 1 -1.7118 -8.5843 -0.0068 40 1 -0.4918 -6.4486 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116567534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -121.648752 kcal Electronic energy + Delta-G solvation = -25696.650847 eV Core-core repulsion = 21603.667090 eV Total energy + Delta-G solvation = -4092.983757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29523 -40.18953 -38.43659 -37.47913 -36.27739 -35.11654 -34.53944 -33.08370 -31.97332 -31.43634 -30.81737 -29.56043 -25.52945 -24.04506 -23.07804 -21.99694 -21.17611 -20.57637 -19.47593 -18.61872 -18.34841 -17.80949 -16.99634 -16.75578 -16.49449 -16.28054 -15.95183 -15.35264 -15.15806 -15.13616 -14.67801 -14.59570 -14.48945 -14.04856 -13.80234 -13.56486 -13.40283 -13.03258 -12.87732 -12.40772 -12.36502 -12.32486 -11.65051 -11.62463 -11.30488 -11.22491 -11.10784 -11.05569 -10.71466 -10.50339 -10.45522 -10.05411 -9.73987 -9.63053 -9.45397 -9.33639 -8.70736 -8.46663 -6.16325 -4.19612 -0.55851 0.12161 0.91780 1.72701 2.32786 2.49526 2.78421 3.25090 3.30050 3.32642 3.38875 3.43424 3.60924 3.61118 3.93722 4.15330 4.35310 4.42416 4.46230 4.48704 4.68723 4.89765 5.03386 5.20977 5.21176 5.51333 5.64234 5.69117 5.92105 5.95751 6.20043 6.21027 6.36609 6.42206 6.58756 6.68592 7.36228 7.40466 7.50435 7.74973 7.81383 8.17150 8.35900 8.85983 9.45714 10.95173 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.001870 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.903035 B =14966.839539 C =15447.050621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.119 3.881 11 N -0.710 5.710 12 C 0.540 3.460 13 O -0.537 6.537 14 C -0.066 4.066 15 C -0.085 4.085 16 C -0.031 4.031 17 C -0.656 4.656 18 S 2.536 3.464 19 O -0.915 6.915 20 O -0.916 6.916 21 C -0.663 4.663 22 C 0.548 3.452 23 N -0.839 5.839 24 O -0.533 6.533 25 C -0.029 4.029 26 C -0.109 4.109 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.398 0.602 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.408 0.592 38 H 0.411 0.589 39 H 0.150 0.850 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -26.061 8.751 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.360 5.360 12 C 0.325 3.675 13 O -0.416 6.416 14 C -0.070 4.070 15 C -0.104 4.104 16 C -0.050 4.050 17 C -0.743 4.743 18 S 2.711 3.289 19 O -0.912 6.912 20 O -0.914 6.914 21 C -0.790 4.790 22 C 0.330 3.670 23 N -0.403 5.403 24 O -0.410 6.410 25 C -0.048 4.048 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.186 0.814 37 H 0.237 0.763 38 H 0.243 0.757 39 H 0.167 0.833 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.395 -26.593 7.337 27.935 hybrid contribution 0.203 1.605 1.244 2.040 sum -4.191 -24.989 8.581 26.751 Atomic orbital electron populations 1.69945 1.06096 1.26993 1.50152 1.25000 0.94917 0.99477 0.94887 0.86493 0.79807 0.82889 0.78253 1.20514 1.21139 1.19722 1.21019 0.93262 0.90274 1.51647 0.92182 1.19340 0.94181 0.91071 0.97956 1.21845 0.96189 0.80996 1.01206 1.46332 1.10746 1.06523 1.72416 1.18256 0.87431 0.83818 0.77981 1.90775 1.13201 1.87539 1.50074 1.20600 0.94021 0.94659 0.97673 1.21451 1.01526 0.90590 0.96875 1.20956 0.91766 0.99432 0.92850 1.30774 1.06305 1.19364 1.17864 1.04566 0.74777 0.73907 0.75694 1.93583 1.43079 1.83618 1.70953 1.93577 1.65021 1.61669 1.71084 1.30902 1.11407 1.05377 1.31315 1.19178 0.78628 0.84718 0.84450 1.43647 1.60696 1.28333 1.07653 1.90942 1.53235 1.60355 1.36516 1.20926 1.00639 0.90645 0.92549 1.21574 0.93286 0.99105 0.98859 0.92765 0.95817 0.95860 0.92117 0.92099 0.76641 0.83416 0.83357 0.81489 0.81442 0.76305 0.75698 0.83269 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.41 5.61 -4.04 -0.02 2.38 16 11 N -0.71 -11.61 5.51 -61.25 -0.34 -11.95 16 12 C 0.54 8.72 7.77 -12.33 -0.10 8.62 16 13 O -0.54 -10.46 16.35 5.32 0.09 -10.38 16 14 C -0.07 -0.83 5.87 -104.97 -0.62 -1.44 16 15 C -0.08 -0.94 9.60 -39.18 -0.38 -1.31 16 16 C -0.03 -0.28 9.45 -39.64 -0.37 -0.66 16 17 C -0.66 -5.82 5.66 -39.49 -0.22 -6.05 16 18 S 2.54 22.97 4.29 -107.50 -0.46 22.51 16 19 O -0.92 -11.27 17.10 -57.55 -0.98 -12.25 16 20 O -0.92 -11.19 17.11 -57.55 -0.98 -12.17 16 21 C -0.66 -2.66 6.46 36.01 0.23 -2.42 16 22 C 0.55 3.70 8.12 -10.98 -0.09 3.61 16 23 N -0.84 -2.09 8.87 31.22 0.28 -1.81 16 24 O -0.53 -6.29 16.70 5.55 0.09 -6.20 16 25 C -0.03 -0.26 9.45 -39.64 -0.37 -0.63 16 26 C -0.11 -1.10 9.54 -39.18 -0.37 -1.48 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.40 5.47 6.51 -40.82 -0.27 5.21 16 33 H 0.15 1.58 7.65 -52.48 -0.40 1.18 16 34 H 0.15 1.00 7.56 -52.49 -0.40 0.60 16 35 H 0.17 0.08 8.14 -51.92 -0.42 -0.34 16 36 H 0.17 0.10 8.14 -51.92 -0.42 -0.32 16 37 H 0.41 -0.36 8.83 -40.82 -0.36 -0.72 16 38 H 0.41 0.68 8.93 -40.82 -0.36 0.32 16 39 H 0.15 1.00 7.55 -52.49 -0.40 0.61 16 40 H 0.14 1.19 6.41 -52.48 -0.34 0.86 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -39.87 365.62 -8.55 -48.42 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.60 Total: -0.77 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.87 Total: -12.10 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.68 Total: -38.46 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.79 Total: -41.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 22.97 SS G_CDS: -0.46 Total: 22.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.87 -8.55 -48.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116567534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.231 kcal (2) G-P(sol) polarization free energy of solvation -39.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds