Wall clock time and date at job start Sat Apr 11 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48496 * 109.46999 * 269.99899 * 3 2 1 5 5 H 1.48497 * 109.47185 * 30.00055 * 3 2 1 6 6 H 1.48503 * 109.46802 * 149.99684 * 3 2 1 7 7 C 1.37878 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99467 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99908 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46991 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46986 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99860 * 179.97438 * 11 10 9 13 13 O 1.21558 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.47841 * 120.00158 * 179.97438 * 12 11 10 15 15 C 1.39575 * 120.14653 * 180.02562 * 14 12 11 16 16 C 1.37960 * 119.85869 * 180.02562 * 15 14 12 17 17 C 1.38364 * 120.14068 * 0.02562 * 16 15 14 18 18 S 1.76193 * 119.85355 * 179.97438 * 17 16 15 19 19 O 1.42105 * 104.27847 * 206.07375 * 18 17 16 20 20 O 1.42101 * 104.27778 * 333.93045 * 18 17 16 21 21 C 1.81397 * 104.44909 * 90.00208 * 18 17 16 22 22 C 1.50700 * 109.47317 * 179.97438 * 21 18 17 23 23 N 1.34778 * 120.00205 * 179.97438 * 22 21 18 24 24 O 1.21284 * 119.99762 * 0.02562 * 22 21 18 25 25 C 1.38365 * 120.29353 * 0.23442 * 17 16 15 26 26 C 1.37963 * 120.14041 * 359.48881 * 25 17 16 27 27 H 0.97003 * 120.00232 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47486 * 60.00000 * 9 7 2 29 29 H 1.08999 * 109.47094 * 299.99307 * 9 7 2 30 30 H 1.08993 * 109.47050 * 59.99679 * 10 9 7 31 31 H 1.08999 * 109.46592 * 299.99561 * 10 9 7 32 32 H 0.96996 * 119.99982 * 359.97438 * 11 10 9 33 33 H 1.08004 * 120.07456 * 0.02562 * 15 14 12 34 34 H 1.07994 * 119.93412 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.47032 * 299.99903 * 21 18 17 36 36 H 1.09000 * 109.47124 * 60.00175 * 21 18 17 37 37 H 0.96995 * 120.00010 * 359.97438 * 23 22 21 38 38 H 0.97000 * 119.99918 * 180.02562 * 23 22 21 39 39 H 1.07989 * 119.92960 * 179.74255 * 25 17 16 40 40 H 1.08005 * 120.06989 * 180.25002 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1867 -6.0979 0.0031 13 8 3.4023 -6.0979 0.0036 14 6 1.4476 -7.3783 0.0043 15 6 2.1424 -8.5888 0.0055 16 6 1.4467 -9.7801 0.0060 17 6 0.0630 -9.7766 0.0049 18 16 -0.8179 -11.3025 0.0050 19 8 -2.0639 -10.9879 -0.6015 20 8 0.0787 -12.2248 -0.5990 21 6 -1.0457 -11.6936 1.7616 22 6 -1.7969 -12.9933 1.8936 23 7 -2.0822 -13.4857 3.1153 24 8 -2.1440 -13.5966 0.9004 25 6 -0.6319 -8.5802 -0.0017 26 6 0.0518 -7.3819 0.0034 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8713 -3.6039 0.8922 31 1 2.8726 -3.6047 -0.8878 32 1 0.5429 -4.9307 0.0024 33 1 3.2225 -8.5929 0.0059 34 1 1.9831 -10.7174 0.0074 35 1 -0.0718 -11.7859 2.2425 36 1 -1.6134 -10.8959 2.2407 37 1 -1.8036 -13.0038 3.9097 38 1 -2.5654 -14.3225 3.2003 39 1 -1.7118 -8.5843 -0.0068 40 1 -0.4918 -6.4486 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116567534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:22 Heat of formation + Delta-G solvation = -156.279618 kcal Electronic energy + Delta-G solvation = -25698.152554 eV Core-core repulsion = 21603.667090 eV Total energy + Delta-G solvation = -4094.485464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37435 -40.72313 -39.49955 -38.26884 -37.06240 -36.72225 -34.97188 -34.92639 -33.05313 -32.24234 -31.32432 -31.11379 -27.14106 -25.30475 -23.93011 -22.89514 -22.47219 -21.77234 -20.18031 -19.42384 -18.81710 -18.74847 -18.44737 -17.61262 -17.43228 -16.96600 -16.84257 -16.58597 -16.50712 -16.18676 -15.98697 -15.59203 -15.22924 -15.02661 -14.92688 -14.62827 -14.32704 -14.07091 -13.92032 -13.75801 -13.25059 -13.21671 -13.12903 -12.95868 -12.55883 -12.36375 -12.29542 -12.26965 -11.96358 -11.71825 -11.64602 -11.48254 -11.07233 -10.86748 -10.64479 -10.59965 -10.21037 -10.10234 -8.24874 -6.34945 -1.21408 -0.73637 0.15575 1.28259 1.42094 1.42430 1.48373 1.53526 1.75489 2.06172 2.26672 2.42375 2.53921 2.93508 3.03456 3.10292 3.51736 3.61171 3.66600 3.79037 3.90552 4.14501 4.27333 4.27777 4.39991 4.46019 4.48509 4.81613 4.82329 4.87331 4.89652 5.12845 5.16973 5.44774 5.56279 5.59582 5.68167 5.76876 6.14363 6.17887 6.45326 6.77926 7.06069 7.09103 7.34377 8.86746 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.001870 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.903035 B =14966.839539 C =15447.050621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.138 3.862 11 N -0.707 5.707 12 C 0.543 3.457 13 O -0.576 6.576 14 C -0.087 4.087 15 C -0.090 4.090 16 C -0.028 4.028 17 C -0.643 4.643 18 S 2.532 3.468 19 O -0.958 6.958 20 O -0.959 6.959 21 C -0.635 4.635 22 C 0.536 3.464 23 N -0.815 5.815 24 O -0.595 6.595 25 C -0.029 4.029 26 C -0.106 4.106 27 H 0.266 0.734 28 H 0.010 0.990 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.412 0.588 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.212 0.788 36 H 0.212 0.788 37 H 0.427 0.573 38 H 0.416 0.584 39 H 0.174 0.826 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 -26.672 10.661 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.357 5.357 12 C 0.331 3.669 13 O -0.458 6.458 14 C -0.091 4.091 15 C -0.110 4.110 16 C -0.047 4.047 17 C -0.729 4.729 18 S 2.712 3.288 19 O -0.955 6.955 20 O -0.956 6.956 21 C -0.767 4.767 22 C 0.319 3.681 23 N -0.380 5.380 24 O -0.477 6.477 25 C -0.047 4.047 26 C -0.125 4.125 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.249 0.751 33 H 0.163 0.837 34 H 0.189 0.811 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.260 0.740 38 H 0.249 0.751 39 H 0.191 0.809 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.725 -27.202 9.253 29.119 hybrid contribution 0.241 1.665 0.764 1.848 sum -4.483 -25.537 10.018 27.796 Atomic orbital electron populations 1.70044 1.07453 1.28005 1.50917 1.25849 0.95804 1.03030 0.94464 0.85463 0.78663 0.78583 0.78443 1.19948 1.20550 1.19052 1.21452 0.93617 0.91875 1.51576 0.92256 1.19150 0.94233 0.91592 0.96611 1.21333 0.95167 0.81681 1.00324 1.46101 1.11334 1.05551 1.72742 1.18761 0.87110 0.84663 0.76415 1.90747 1.15020 1.88176 1.51823 1.20323 0.94857 0.92946 1.00935 1.21520 1.01636 0.90806 0.97040 1.21186 0.91965 0.99568 0.91980 1.30834 1.06171 1.19369 1.16562 1.04281 0.73454 0.73123 0.77906 1.93536 1.44123 1.83952 1.73886 1.93530 1.65705 1.62348 1.73999 1.30647 1.14442 1.05481 1.26147 1.19606 0.78518 0.85247 0.84718 1.43530 1.59052 1.28266 1.07137 1.90935 1.55920 1.62201 1.38610 1.21228 1.01870 0.89982 0.91647 1.21735 0.92284 1.00400 0.98079 0.92534 0.97200 0.96903 0.92867 0.93201 0.75073 0.83684 0.81082 0.77065 0.77067 0.73979 0.75065 0.80908 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.04 5.09 29.85 0.15 1.19 16 10 C 0.14 5.67 5.61 86.38 0.48 6.15 16 11 N -0.71 -23.13 5.51 -465.98 -2.57 -25.69 16 12 C 0.54 17.56 7.77 86.79 0.67 18.24 16 13 O -0.58 -22.86 16.35 -3.90 -0.06 -22.93 16 14 C -0.09 -2.11 5.87 -20.09 -0.12 -2.23 16 15 C -0.09 -1.90 9.60 22.53 0.22 -1.69 16 16 C -0.03 -0.46 9.45 22.23 0.21 -0.25 16 17 C -0.64 -9.93 5.66 22.33 0.13 -9.81 16 18 S 2.53 41.67 4.29 -56.49 -0.24 41.43 16 19 O -0.96 -22.95 17.10 -127.64 -2.18 -25.13 16 20 O -0.96 -22.90 17.11 -127.64 -2.18 -25.08 16 21 C -0.64 -2.50 6.46 71.24 0.46 -2.04 16 22 C 0.54 5.83 8.12 87.66 0.71 6.55 16 23 N -0.82 -1.32 8.87 -173.53 -1.54 -2.86 16 24 O -0.59 -13.70 16.70 -3.04 -0.05 -13.75 16 25 C -0.03 -0.44 9.45 22.23 0.21 -0.23 16 26 C -0.11 -1.96 9.54 22.53 0.21 -1.74 16 27 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.41 11.13 6.51 -92.71 -0.60 10.52 16 33 H 0.15 3.08 7.65 -2.91 -0.02 3.05 16 34 H 0.17 1.93 7.56 -2.91 -0.02 1.91 16 35 H 0.21 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.21 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.43 -2.68 8.83 -92.71 -0.82 -3.50 16 38 H 0.42 0.32 8.93 -92.71 -0.83 -0.51 16 39 H 0.17 1.82 7.55 -2.92 -0.02 1.80 16 40 H 0.16 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -90.22 365.62 -3.60 -93.83 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -1.12 Total: 2.46 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.04 Total: -14.42 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.82 Total: -81.13 kcal Atomic # 8 Polarization: -82.41 SS G_CDS: -4.48 Total: -86.89 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 41.67 SS G_CDS: -0.24 Total: 41.43 kcal Total: -90.22 -3.60 -93.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116567534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.452 kcal (2) G-P(sol) polarization free energy of solvation -90.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds