Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53037 * 113.15665 * 280.37737 * 21 19 18 23 23 S 1.81429 * 89.89215 * 211.85358 * 22 21 19 24 24 O 1.42099 * 112.75220 * 280.47357 * 23 22 21 25 25 O 1.42107 * 112.83236 * 136.71142 * 23 22 21 26 26 C 1.53046 * 113.15087 * 179.97438 * 21 19 18 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 36 36 H 1.09000 * 112.49397 * 50.22416 * 21 19 18 37 37 H 1.09004 * 113.14915 * 327.11082 * 22 21 19 38 38 H 1.08994 * 113.15179 * 96.59314 * 22 21 19 39 39 H 1.08999 * 113.15231 * 263.40906 * 26 21 19 40 40 H 1.08998 * 113.14427 * 32.89371 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.4630 -8.4319 1.4187 23 16 -3.8196 -9.5625 1.0028 24 8 -4.8206 -8.9488 0.2023 25 8 -4.1342 -10.4587 2.0598 26 6 -2.3776 -10.0934 0.0377 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1698 -5.0282 -0.0013 33 1 5.4519 -7.1576 -0.0007 34 1 4.2407 -9.2968 0.0000 35 1 -0.2758 -6.5552 0.0166 36 1 -2.3132 -8.0367 -0.7413 37 1 -1.8311 -8.7999 2.2271 38 1 -2.7945 -7.4065 1.5818 39 1 -2.6377 -10.4592 -0.9556 40 1 -1.7292 -10.7819 0.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136553791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -71.846037 kcal Electronic energy + Delta-G solvation = -26446.464000 eV Core-core repulsion = 22355.639851 eV Total energy + Delta-G solvation = -4090.824149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07171 -39.72630 -37.92719 -37.71240 -36.55021 -36.10163 -34.94928 -33.52675 -31.73202 -30.68304 -29.25856 -27.07904 -25.63281 -25.25651 -23.26672 -22.67048 -21.03272 -20.24312 -19.21540 -18.57913 -17.94845 -17.53573 -16.84133 -16.64558 -16.38447 -16.19079 -15.92406 -15.65170 -15.32179 -14.98064 -14.62975 -14.51158 -14.18870 -13.97088 -13.67103 -13.36784 -12.93736 -12.63790 -12.61589 -12.45124 -12.31612 -12.13480 -12.04260 -11.97071 -11.38845 -11.11871 -11.03329 -10.84215 -10.79618 -10.72636 -10.34491 -10.11608 -9.82936 -9.46724 -9.31991 -9.16328 -8.56431 -7.77715 -6.22130 -4.27337 -0.29066 1.07988 1.35316 1.53869 2.45174 2.67396 3.19667 3.25252 3.25620 3.27872 3.44368 3.62476 3.68341 3.91552 4.09491 4.30038 4.34539 4.47786 4.70498 4.75301 4.86696 4.96721 5.02566 5.14894 5.19230 5.29339 5.37567 5.46801 5.78283 5.83163 5.96820 6.09291 6.23380 6.46981 6.51671 7.10453 7.27255 7.46770 7.56535 7.78238 7.90827 8.09427 8.19972 8.77756 9.37954 10.89244 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.002715 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.562775 B =10312.134056 C =12759.782553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.070 3.930 13 C -0.148 4.148 14 C -0.157 4.157 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.324 3.676 18 N -0.647 5.647 19 C 0.530 3.470 20 O -0.471 6.471 21 C -0.095 4.095 22 C -0.597 4.597 23 S 2.420 3.580 24 O -0.908 6.908 25 O -0.921 6.921 26 C -0.579 4.579 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.426 0.574 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -18.445 0.723 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.018 3.982 13 C -0.175 4.175 14 C -0.178 4.178 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.092 3.908 18 N -0.295 5.295 19 C 0.313 3.687 20 O -0.340 6.340 21 C -0.119 4.119 22 C -0.724 4.724 23 S 2.600 3.400 24 O -0.906 6.906 25 O -0.918 6.918 26 C -0.708 4.708 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.956 -20.108 0.966 20.347 hybrid contribution 2.146 2.708 -0.322 3.470 sum -0.811 -17.400 0.644 17.430 Atomic orbital electron populations 1.69958 1.06101 1.27146 1.49407 1.24978 0.94922 0.99430 0.94742 0.86479 0.79738 0.82842 0.78289 1.20443 1.20989 1.19754 1.20934 0.93057 0.90109 1.52660 0.92348 1.19126 0.94109 0.88890 0.98887 1.23421 0.97292 0.80213 0.99889 1.86100 1.36291 1.12942 1.87500 1.19593 0.91163 0.87111 1.00286 1.21632 0.92232 1.00433 1.03166 1.21917 1.01286 0.92505 1.02095 1.22413 0.88731 0.97954 0.99121 1.67589 1.07973 1.26913 1.13447 1.17774 0.84675 0.87034 1.01338 1.43374 1.03906 1.10308 1.71908 1.19835 0.88570 0.83352 0.76992 1.90803 1.65116 1.33989 1.44061 1.21597 0.95633 0.96880 0.97771 1.31009 1.19338 1.18751 1.03326 1.08185 0.76374 0.78208 0.77229 1.93744 1.54006 1.74845 1.67960 1.93661 1.84813 1.60721 1.52574 1.30899 1.19991 1.03257 1.16643 0.92596 0.95333 0.95358 0.92880 0.92897 0.83639 0.84681 0.82536 0.73572 0.84209 0.83262 0.84349 0.85043 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -13.84 9.11 -34.44 -0.31 -14.16 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.24 4.70 37.16 0.17 1.42 16 11 O -0.32 -5.51 9.39 -19.66 -0.18 -5.69 16 12 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 13 C -0.15 -2.03 9.14 -39.17 -0.36 -2.39 16 14 C -0.16 -1.83 10.10 -39.44 -0.40 -2.23 16 15 C 0.07 0.95 11.17 -17.55 -0.20 0.75 16 16 N -0.44 -6.96 7.88 -12.22 -0.10 -7.06 16 17 C 0.32 5.02 7.45 -154.43 -1.15 3.87 16 18 N -0.65 -8.52 5.39 -11.29 -0.06 -8.58 16 19 C 0.53 6.54 7.29 -10.99 -0.08 6.46 16 20 O -0.47 -7.34 14.20 5.56 0.08 -7.26 16 21 C -0.10 -0.74 3.82 -91.73 -0.35 -1.09 16 22 C -0.60 -3.55 7.48 37.18 0.28 -3.28 16 23 S 2.42 14.94 7.55 -107.50 -0.81 14.12 16 24 O -0.91 -8.38 18.18 -57.31 -1.04 -9.43 16 25 O -0.92 -8.90 18.18 -57.31 -1.04 -9.94 16 26 C -0.58 -3.66 7.18 37.18 0.27 -3.39 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 31 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 32 H 0.15 1.85 6.44 -52.49 -0.34 1.52 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.43 4.87 8.04 -40.82 -0.33 4.54 16 36 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.15 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.16 1.08 7.57 -51.93 -0.39 0.69 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -37.39 358.31 -9.46 -46.85 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.78 Total: 1.75 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.63 Total: -11.13 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.58 Total: -40.00 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -2.19 Total: -32.32 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 14.94 SS G_CDS: -0.81 Total: 14.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.39 -9.46 -46.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136553791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.999 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds