Wall clock time and date at job start Sat Apr 11 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53037 * 113.15665 * 280.37737 * 21 19 18 23 23 S 1.81429 * 89.89215 * 211.85358 * 22 21 19 24 24 O 1.42099 * 112.75220 * 280.47357 * 23 22 21 25 25 O 1.42107 * 112.83236 * 136.71142 * 23 22 21 26 26 C 1.53046 * 113.15087 * 179.97438 * 21 19 18 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 35 35 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 36 36 H 1.09000 * 112.49397 * 50.22416 * 21 19 18 37 37 H 1.09004 * 113.14915 * 327.11082 * 22 21 19 38 38 H 1.08994 * 113.15179 * 96.59314 * 22 21 19 39 39 H 1.08999 * 113.15231 * 263.40906 * 26 21 19 40 40 H 1.08998 * 113.14427 * 32.89371 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.4630 -8.4319 1.4187 23 16 -3.8196 -9.5625 1.0028 24 8 -4.8206 -8.9488 0.2023 25 8 -4.1342 -10.4587 2.0598 26 6 -2.3776 -10.0934 0.0377 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1698 -5.0282 -0.0013 33 1 5.4519 -7.1576 -0.0007 34 1 4.2407 -9.2968 0.0000 35 1 -0.2758 -6.5552 0.0166 36 1 -2.3132 -8.0367 -0.7413 37 1 -1.8311 -8.7999 2.2271 38 1 -2.7945 -7.4065 1.5818 39 1 -2.6377 -10.4592 -0.9556 40 1 -1.7292 -10.7819 0.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136553791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:29 Heat of formation + Delta-G solvation = -99.956655 kcal Electronic energy + Delta-G solvation = -26447.682968 eV Core-core repulsion = 22355.639851 eV Total energy + Delta-G solvation = -4092.043117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11881 -40.73077 -39.15601 -38.40644 -37.24222 -36.80117 -35.99826 -35.44422 -32.91483 -32.27095 -30.48223 -27.60749 -27.17443 -26.30823 -24.58061 -23.68440 -22.59023 -21.19159 -19.79835 -19.65448 -19.01455 -18.65635 -18.03162 -17.50350 -17.39373 -17.18130 -17.11514 -16.60330 -16.44608 -16.27242 -15.92793 -15.44695 -15.20713 -15.00301 -14.62285 -14.34850 -14.15471 -14.07730 -13.62594 -13.34129 -13.32191 -13.31231 -12.93943 -12.81690 -12.75018 -12.61089 -12.44494 -12.06332 -11.89132 -11.71784 -11.63302 -11.43900 -11.39339 -11.23970 -10.60385 -10.42630 -10.21765 -8.88708 -8.25474 -6.37720 -0.86842 0.05193 0.26934 0.98494 1.43068 1.43560 1.54402 1.54973 1.76580 2.10036 2.44306 2.69858 2.84044 3.01850 3.09952 3.10061 3.35586 3.55225 3.76206 3.84611 3.94572 4.07502 4.16638 4.26848 4.29356 4.32954 4.45404 4.50593 4.74851 4.81150 4.93400 4.95192 5.12550 5.23876 5.31266 5.51261 5.51788 5.73428 6.08211 6.15581 6.31356 6.77145 6.87626 7.20579 7.32390 8.86954 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.002715 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.562775 B =10312.134056 C =12759.782553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.327 6.327 12 C 0.043 3.957 13 C -0.150 4.150 14 C -0.144 4.144 15 C 0.073 3.927 16 N -0.472 5.472 17 C 0.308 3.692 18 N -0.649 5.649 19 C 0.527 3.473 20 O -0.507 6.507 21 C -0.101 4.101 22 C -0.592 4.592 23 S 2.466 3.534 24 O -0.934 6.934 25 O -0.953 6.953 26 C -0.576 4.576 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.186 0.814 35 H 0.431 0.569 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -18.501 0.607 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.008 4.008 13 C -0.176 4.176 14 C -0.165 4.165 15 C -0.084 4.084 16 N -0.188 5.188 17 C 0.076 3.924 18 N -0.297 5.297 19 C 0.312 3.688 20 O -0.379 6.379 21 C -0.124 4.124 22 C -0.720 4.720 23 S 2.647 3.353 24 O -0.932 6.932 25 O -0.950 6.950 26 C -0.704 4.704 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.174 0.826 33 H 0.192 0.808 34 H 0.203 0.797 35 H 0.270 0.730 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.159 -20.176 0.852 20.227 hybrid contribution 1.671 2.609 -0.295 3.112 sum 0.512 -17.567 0.557 17.583 Atomic orbital electron populations 1.70090 1.07829 1.28105 1.50677 1.25929 0.95749 1.03342 0.94353 0.85389 0.78682 0.78122 0.78522 1.19790 1.20958 1.18423 1.21397 0.93843 0.91104 1.51914 0.91189 1.18939 0.94504 0.90887 0.96369 1.22957 0.95624 0.79619 1.00861 1.86022 1.36586 1.12996 1.88466 1.19756 0.92128 0.86294 1.02612 1.21916 0.91547 1.01839 1.02343 1.22286 1.03092 0.91099 0.99977 1.23052 0.88125 0.99756 0.97437 1.67664 1.09472 1.27134 1.14511 1.18010 0.85662 0.87017 1.01680 1.43529 1.03473 1.10982 1.71699 1.20538 0.90177 0.82466 0.75607 1.90772 1.66422 1.34941 1.45753 1.21792 0.92538 0.98463 0.99635 1.31016 1.18541 1.19960 1.02483 1.06807 0.75489 0.77077 0.75881 1.93704 1.55524 1.75364 1.68579 1.93613 1.85447 1.62003 1.53981 1.30892 1.19238 1.02533 1.17779 0.92534 0.97919 0.97884 0.91832 0.91842 0.82631 0.80774 0.79665 0.73029 0.81724 0.83054 0.82445 0.83169 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.54 -28.47 9.11 25.60 0.23 -28.24 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.48 5.34 29.85 0.16 1.64 16 10 C 0.08 3.14 4.70 71.98 0.34 3.48 16 11 O -0.33 -11.50 9.39 -93.25 -0.88 -12.38 16 12 C 0.04 1.32 6.72 22.70 0.15 1.48 16 13 C -0.15 -3.83 9.14 22.53 0.21 -3.63 16 14 C -0.14 -2.93 10.10 22.36 0.23 -2.70 16 15 C 0.07 1.70 11.17 84.64 0.95 2.64 16 16 N -0.47 -14.46 7.88 -192.58 -1.52 -15.98 16 17 C 0.31 9.50 7.45 132.98 0.99 10.49 16 18 N -0.65 -17.19 5.39 -308.03 -1.66 -18.85 16 19 C 0.53 12.93 7.29 87.66 0.64 13.57 16 20 O -0.51 -15.88 14.20 -3.02 -0.04 -15.92 16 21 C -0.10 -1.47 3.82 -11.51 -0.04 -1.52 16 22 C -0.59 -6.45 7.48 71.99 0.54 -5.91 16 23 S 2.47 28.51 7.55 -56.49 -0.43 28.08 16 24 O -0.93 -16.40 18.18 -127.87 -2.32 -18.72 16 25 O -0.95 -18.09 18.18 -127.87 -2.32 -20.41 16 26 C -0.58 -6.71 7.18 72.00 0.52 -6.19 16 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 31 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 32 H 0.16 3.59 6.44 -2.91 -0.02 3.57 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.19 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.43 10.05 8.04 -92.71 -0.75 9.30 16 36 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.15 1.67 8.11 -2.38 -0.02 1.65 16 38 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.15 2.03 7.57 -2.39 -0.02 2.01 16 Total: -1.00 -81.40 358.31 -1.15 -82.55 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.34 Total: 15.49 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.36 Total: -14.14 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.89 Total: -87.89 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -5.57 Total: -67.43 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 28.51 SS G_CDS: -0.43 Total: 28.08 kcal Total: -81.40 -1.15 -82.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136553791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.409 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds