Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36955 * 119.99930 * 2 1 4 4 H 1.07997 * 119.99856 * 137.11973 * 3 2 1 5 5 C 1.38983 * 119.99720 * 317.11588 * 3 2 1 6 6 N 1.31410 * 120.00178 * 37.15315 * 5 3 2 7 7 Si 1.86798 * 119.99876 * 217.15054 * 5 3 2 8 8 H 1.48501 * 109.47033 * 60.00445 * 7 5 3 9 9 H 1.48502 * 109.46941 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47261 * 300.00264 * 7 5 3 11 11 C 1.34778 * 119.99676 * 179.97438 * 2 1 3 12 12 O 1.21671 * 119.99226 * 186.93173 * 11 2 1 13 13 C 1.47046 * 120.00456 * 6.92985 * 11 2 1 14 14 C 1.38015 * 120.55512 * 317.56551 * 13 11 2 15 15 N 1.33972 * 122.18757 * 179.97438 * 14 13 11 16 16 H 0.96994 * 118.58897 * 180.02562 * 15 14 13 17 17 C 1.37790 * 122.81095 * 0.04777 * 15 14 13 18 18 C 1.39282 * 120.51775 * 179.97438 * 17 15 14 19 19 C 1.37738 * 119.97338 * 180.02562 * 18 17 15 20 20 C 1.38790 * 120.72674 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.85226 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47233 * 0.02562 * 21 20 19 23 23 F 1.39908 * 109.46878 * 119.99758 * 21 20 19 24 24 F 1.39893 * 109.47159 * 239.99753 * 21 20 19 25 25 C 1.37713 * 120.29027 * 359.97438 * 20 19 18 26 26 C 1.39494 * 119.61009 * 0.02562 * 25 20 19 27 27 C 1.47170 * 120.56143 * 137.55009 * 13 11 2 28 28 O 1.21865 * 121.41203 * 359.97438 * 27 13 11 29 29 H 1.09001 * 109.47063 * 281.28046 * 1 2 3 30 30 H 1.08994 * 109.47236 * 41.28436 * 1 2 3 31 31 H 1.09002 * 109.47091 * 161.29053 * 1 2 3 32 32 H 0.96993 * 120.00319 * 179.97438 * 6 5 3 33 33 H 1.07994 * 118.91024 * 359.97438 * 14 13 11 34 34 H 1.08001 * 120.01201 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.63663 * 180.28229 * 19 18 17 36 36 H 1.08001 * 120.19099 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.0133 1.3110 0.6364 5 6 1.7334 2.2288 -0.8191 6 7 0.4510 2.4415 -1.0114 7 14 2.9968 3.3280 -1.6467 8 1 3.8672 2.5068 -2.5260 9 1 2.3005 4.3570 -2.4602 10 1 3.8270 3.9945 -0.6115 11 6 2.1389 -1.1672 0.0005 12 8 3.3489 -1.1709 0.1277 13 6 1.4117 -2.4361 -0.1526 14 6 0.2241 -2.6495 0.5174 15 7 -0.4654 -3.7923 0.4015 16 1 -1.2945 -3.8863 0.8959 17 6 -0.0468 -4.8398 -0.3897 18 6 -0.8014 -6.0074 -0.4748 19 6 -0.3721 -7.0479 -1.2687 20 6 0.8098 -6.9490 -1.9896 21 6 1.2612 -8.0997 -2.8516 22 9 0.3323 -9.1420 -2.7621 23 9 1.3590 -7.6758 -4.1814 24 9 2.5110 -8.5492 -2.4124 25 6 1.5718 -5.8040 -1.9205 26 6 1.1494 -4.7422 -1.1205 27 6 1.9379 -3.4998 -1.0229 28 8 2.9816 -3.3604 -1.6364 29 1 -0.3633 0.2010 1.0078 30 1 -0.3633 0.7722 -0.6780 31 1 -0.3633 -0.9734 -0.3296 32 1 0.1604 3.1694 -1.5827 33 1 -0.1623 -1.8693 1.1563 34 1 -1.7227 -6.0969 0.0816 35 1 -0.9638 -7.9490 -1.3343 36 1 2.4914 -5.7289 -2.4818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150468113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -146.529018 kcal Electronic energy + Delta-G solvation = -28977.289452 eV Core-core repulsion = 24205.926115 eV Total energy + Delta-G solvation = -4771.363338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.32657 -47.86693 -47.75848 -41.19908 -38.70890 -37.72402 -37.30173 -34.58351 -32.59680 -31.75550 -31.39395 -30.28590 -26.67045 -26.26528 -25.04118 -23.94425 -23.06706 -22.38439 -20.44979 -19.02903 -18.67984 -18.63622 -18.47360 -17.50863 -17.13470 -16.85097 -15.66351 -15.40393 -15.06292 -14.87600 -14.69873 -14.66870 -14.52319 -14.26663 -14.22809 -14.15108 -13.97873 -13.93830 -13.90792 -13.71735 -13.20508 -13.02642 -12.54241 -12.40894 -12.15785 -11.86325 -11.69705 -11.48508 -11.33838 -10.73294 -10.45798 -10.25517 -9.54959 -9.44020 -9.36786 -8.65405 -8.48637 -7.76931 -7.64519 -6.53761 -3.92774 0.42320 0.51623 1.57359 2.45521 2.62816 2.66259 3.21383 3.28754 3.38346 3.51771 3.62429 3.74809 3.96391 4.19195 4.24702 4.25810 4.31897 4.52343 4.70074 4.76579 4.82714 4.84107 5.17037 5.35479 5.41268 5.43813 5.59747 5.76369 5.90629 6.11514 6.18559 6.32496 6.54238 6.72991 6.87198 7.18783 7.64927 8.07175 8.27488 8.53507 9.14971 9.32132 9.99937 10.45128 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.002907 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.918350 B = 9630.910087 C =10268.195067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.443 5.443 3 C -0.330 4.330 4 H 0.096 0.904 5 C 0.066 3.934 6 N -0.844 5.844 7 Si 0.898 3.102 8 H -0.269 1.269 9 H -0.286 1.286 10 H -0.270 1.270 11 C 0.515 3.485 12 O -0.560 6.560 13 C -0.268 4.268 14 C 0.156 3.844 15 N -0.600 5.600 16 H 0.420 0.580 17 C 0.225 3.775 18 C -0.177 4.177 19 C -0.018 4.018 20 C -0.235 4.235 21 C 0.515 3.485 22 F -0.180 7.180 23 F -0.176 7.176 24 F -0.176 7.176 25 C 0.028 3.972 26 C -0.193 4.193 27 C 0.431 3.569 28 O -0.450 6.450 29 H 0.033 0.967 30 H 0.126 0.874 31 H 0.037 0.963 32 H 0.272 0.728 33 H 0.178 0.822 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 -18.870 1.077 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.164 5.164 3 C -0.456 4.456 4 H 0.113 0.887 5 C -0.141 4.141 6 N -0.479 5.479 7 Si 0.723 3.277 8 H -0.194 1.194 9 H -0.211 1.211 10 H -0.195 1.195 11 C 0.303 3.697 12 O -0.442 6.442 13 C -0.279 4.279 14 C 0.028 3.972 15 N -0.208 5.208 16 H 0.257 0.743 17 C 0.119 3.881 18 C -0.197 4.197 19 C -0.037 4.037 20 C -0.237 4.237 21 C 0.461 3.539 22 F -0.161 7.161 23 F -0.157 7.157 24 F -0.157 7.157 25 C 0.009 3.991 26 C -0.198 4.198 27 C 0.312 3.688 28 O -0.327 6.327 29 H 0.052 0.948 30 H 0.144 0.856 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.195 0.805 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.075 -18.572 0.687 21.140 hybrid contribution -0.107 0.338 -0.278 0.451 sum -10.182 -18.234 0.409 20.888 Atomic orbital electron populations 1.22937 0.82979 1.02245 1.02165 1.43307 1.04762 1.04401 1.63881 1.19130 1.12388 0.89856 1.24256 0.88681 1.25519 0.95781 0.97753 0.95097 1.69750 1.14479 1.29491 1.34212 0.86483 0.82132 0.78725 0.80333 1.19419 1.21127 1.19534 1.17268 0.86943 0.82087 0.83366 1.90665 1.13723 1.86386 1.53413 1.22406 0.98062 0.99897 1.07489 1.22376 0.91480 0.86903 0.96430 1.40847 1.24840 1.12498 1.42624 0.74323 1.18065 0.92595 0.87770 0.89641 1.20612 1.01914 0.92302 1.04911 1.20804 0.93040 0.98427 0.91407 1.19759 1.01047 0.95925 1.07012 1.18138 0.75005 0.82069 0.78723 1.93147 1.66022 1.60808 1.96125 1.93235 1.95954 1.89826 1.36724 1.93230 1.42918 1.90288 1.89306 1.20820 0.97410 0.89001 0.91846 1.20229 0.97209 0.98678 1.03675 1.19389 0.84727 0.84264 0.80424 1.90733 1.21246 1.80314 1.40425 0.94828 0.85634 0.94450 0.91734 0.80516 0.83802 0.83749 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 8.61 59.85 0.52 1.33 16 2 N -0.44 -11.25 2.99 -123.55 -0.37 -11.62 16 3 C -0.33 -9.21 8.75 -14.99 -0.13 -9.34 16 4 H 0.10 2.78 7.94 -52.49 -0.42 2.37 16 5 C 0.07 1.72 5.40 -17.46 -0.09 1.63 16 6 N -0.84 -21.46 10.59 55.50 0.59 -20.87 16 7 Si 0.90 20.88 29.68 -169.99 -5.04 15.84 16 8 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.52 13.17 7.12 -12.69 -0.09 13.08 16 12 O -0.56 -16.80 16.43 -3.44 -0.06 -16.86 16 13 C -0.27 -5.31 5.41 -102.78 -0.56 -5.86 16 14 C 0.16 2.10 8.45 -16.70 -0.14 1.96 16 15 N -0.60 -5.56 5.21 -10.40 -0.05 -5.61 16 16 H 0.42 1.91 8.73 -40.82 -0.36 1.55 16 17 C 0.22 2.43 6.66 -83.94 -0.56 1.87 16 18 C -0.18 -1.32 9.87 -39.38 -0.39 -1.71 16 19 C -0.02 -0.14 9.40 -39.56 -0.37 -0.52 16 20 C -0.23 -2.52 5.37 -104.61 -0.56 -3.08 16 21 C 0.51 5.48 3.31 36.01 0.12 5.60 16 22 F -0.18 -1.71 15.95 2.25 0.04 -1.68 16 23 F -0.18 -2.05 17.23 2.25 0.04 -2.01 16 24 F -0.18 -2.04 17.23 2.25 0.04 -2.00 16 25 C 0.03 0.37 9.18 -39.31 -0.36 0.01 16 26 C -0.19 -2.86 5.89 -104.81 -0.62 -3.47 16 27 C 0.43 8.64 7.12 -32.20 -0.23 8.41 16 28 O -0.45 -10.86 16.57 -3.61 -0.06 -10.92 16 29 H 0.03 0.62 7.90 -51.93 -0.41 0.21 16 30 H 0.13 2.89 5.02 -51.93 -0.26 2.63 16 31 H 0.04 0.63 4.55 -51.93 -0.24 0.39 16 32 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.18 2.06 5.91 -52.49 -0.31 1.75 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.14 0.81 7.13 -52.49 -0.37 0.44 16 36 H 0.15 2.05 7.78 -52.49 -0.41 1.64 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -35.80 325.06 -5.78 -41.58 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.33 Total: -0.65 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -3.47 Total: 9.90 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.16 Total: -38.09 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.12 Total: -27.78 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.11 Total: -5.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.04 Total: 15.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.80 -5.78 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150468113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.948 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds