Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00015 * 2 1 4 4 O 1.42898 * 109.47493 * 134.99953 * 3 2 1 5 5 N 1.41598 * 114.00406 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99857 * 180.02562 * 5 4 3 7 7 O 1.21550 * 120.00251 * 0.02562 * 6 5 4 8 8 C 1.47845 * 119.99639 * 180.02562 * 6 5 4 9 9 C 1.39598 * 120.14980 * 0.02562 * 8 6 5 10 10 C 1.37931 * 119.85924 * 180.25795 * 9 8 6 11 11 C 1.38382 * 120.13971 * 359.44212 * 10 9 8 12 12 C 1.50702 * 119.85413 * 180.26045 * 11 10 9 13 13 C 1.38341 * 120.29684 * 0.55956 * 11 10 9 14 14 S 1.76193 * 119.92954 * 179.70482 * 13 11 10 15 15 O 1.42099 * 106.40224 * 178.36422 * 14 13 11 16 16 O 1.42102 * 106.40000 * 311.27770 * 14 13 11 17 17 N 1.65602 * 107.22348 * 64.81920 * 14 13 11 18 18 C 1.36937 * 119.99943 * 64.52572 * 17 14 13 19 19 H 1.08008 * 119.99406 * 5.04349 * 18 17 14 20 20 C 1.38805 * 119.99970 * 185.04387 * 18 17 14 21 21 N 1.31611 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99794 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47238 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47014 * 120.00188 * 22 20 18 25 25 H 1.48504 * 109.47199 * 239.99965 * 22 20 18 26 26 C 1.37981 * 120.14007 * 359.72147 * 13 11 10 27 27 H 1.08003 * 120.00298 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00209 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99300 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47461 * 14.99483 * 3 2 1 31 31 H 1.09001 * 109.46793 * 255.00024 * 3 2 1 32 32 H 0.97003 * 119.99665 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.06652 * 359.97438 * 9 8 6 34 34 H 1.07998 * 119.92826 * 179.72244 * 10 9 8 35 35 H 1.09004 * 109.47189 * 264.56391 * 12 11 10 36 36 H 1.09006 * 109.47257 * 24.55586 * 12 11 10 37 37 H 1.08993 * 109.47824 * 144.55698 * 12 11 10 38 38 H 0.96996 * 119.99870 * 244.52662 * 17 14 13 39 39 H 0.97003 * 120.00136 * 179.97438 * 21 20 18 40 40 H 1.07999 * 120.07323 * 180.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9526 5 7 3.9013 2.4240 1.0313 6 6 4.9365 2.4955 1.8913 7 8 5.2056 1.5447 2.5990 8 6 5.7449 3.7307 1.9738 9 6 5.4384 4.8248 1.1628 10 6 6.1998 5.9722 1.2408 11 6 7.2586 6.0444 2.1289 12 6 8.0827 7.3033 2.2131 13 6 7.5679 4.9638 2.9355 14 16 8.9229 5.0635 4.0573 15 8 8.9559 3.8275 4.7576 16 8 10.0245 5.5642 3.3123 17 7 8.5485 6.2252 5.1765 18 6 7.4895 6.0424 6.0251 19 1 6.9490 5.1072 6.0204 20 6 7.1107 7.0587 6.8913 21 7 7.7697 8.1979 6.8974 22 14 5.6665 6.8089 8.0495 23 1 5.1004 5.4507 7.8491 24 1 6.1280 6.9500 9.4538 25 1 4.6232 7.8272 7.7667 26 6 6.8177 3.8080 2.8631 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4867 -0.9927 32 1 3.6868 3.1827 0.4662 33 1 4.6095 4.7712 0.4724 34 1 5.9664 6.8177 0.6107 35 1 8.9657 7.2024 1.5820 36 1 7.4876 8.1506 1.8723 37 1 8.3909 7.4676 3.2455 38 1 9.0793 7.0352 5.2308 39 1 7.5048 8.9083 7.5025 40 1 7.0598 2.9653 3.4936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158208492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = -49.830256 kcal Electronic energy + Delta-G solvation = -26933.443519 eV Core-core repulsion = 22843.574046 eV Total energy + Delta-G solvation = -4089.869473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.08622 -38.57657 -37.50825 -36.12945 -34.79542 -34.71755 -34.54003 -33.13774 -31.72902 -31.04747 -30.80950 -27.35633 -26.22054 -24.60404 -22.96229 -22.73355 -20.97253 -20.27622 -18.99894 -18.40848 -18.19613 -17.54137 -16.57717 -16.36064 -15.86694 -15.55877 -15.41283 -15.10350 -14.64064 -14.58296 -14.35085 -14.11964 -13.68114 -13.63236 -13.52766 -13.35700 -13.16490 -12.21948 -12.01525 -11.91202 -11.84358 -11.68554 -11.51565 -11.38381 -11.33543 -11.12722 -10.99319 -10.85720 -10.57228 -10.39563 -10.15803 -10.01398 -9.98681 -9.81617 -9.15396 -9.09150 -8.62328 -8.36738 -6.59035 -3.98779 0.80702 1.26008 1.37437 1.55449 1.97082 2.81119 3.13841 3.20707 3.26421 3.76514 4.01515 4.16596 4.40164 4.41338 4.53045 4.57643 4.67148 4.75735 4.83111 4.91365 4.99409 5.03643 5.13961 5.33633 5.37856 5.54874 5.75112 5.82006 5.96263 5.98266 6.05860 6.11982 6.22137 6.26434 6.39715 6.54969 6.58463 6.93354 7.00632 7.14074 7.38284 8.17072 8.57467 8.67927 9.13439 10.55841 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.003219 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.707702 B = 8696.371434 C = 9691.874265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.151 4.151 3 C 0.058 3.942 4 O -0.137 6.137 5 N -0.600 5.600 6 C 0.577 3.423 7 O -0.511 6.511 8 C -0.164 4.164 9 C -0.051 4.051 10 C -0.153 4.153 11 C 0.052 3.948 12 C -0.147 4.147 13 C -0.665 4.665 14 S 2.597 3.403 15 O -0.970 6.970 16 O -0.999 6.999 17 N -0.942 5.942 18 C -0.265 4.265 19 H 0.107 0.893 20 C 0.033 3.967 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.279 1.279 26 C 0.042 3.958 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.412 0.588 39 H 0.276 0.724 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -3.356 -14.940 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.019 4.019 4 O -0.141 6.141 5 N -0.304 5.304 6 C 0.366 3.634 7 O -0.385 6.385 8 C -0.169 4.169 9 C -0.069 4.069 10 C -0.172 4.172 11 C 0.051 3.949 12 C -0.204 4.204 13 C -0.743 4.743 14 S 2.688 3.312 15 O -0.960 6.960 16 O -0.987 6.987 17 N -0.694 5.694 18 C -0.407 4.407 19 H 0.125 0.875 20 C -0.176 4.176 21 N -0.511 5.511 22 Si 0.747 3.253 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.205 1.205 26 C 0.022 3.978 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.246 0.754 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.748 -4.828 -14.464 18.656 hybrid contribution -1.827 0.954 -0.377 2.095 sum -12.574 -3.874 -14.841 19.834 Atomic orbital electron populations 1.23905 0.95304 1.02692 0.98627 1.22534 0.95589 0.97381 1.01506 1.22039 0.89064 0.97545 0.93228 1.90633 1.43307 1.19289 1.60917 1.47419 1.29856 1.08937 1.44162 1.18262 0.78307 0.87975 0.78863 1.90820 1.68157 1.37677 1.41859 1.19543 1.00181 0.93423 1.03715 1.21283 0.97368 0.92512 0.95782 1.21036 0.96910 0.98326 1.00883 1.19771 0.92013 0.93611 0.89531 1.21307 0.99999 0.93779 1.05279 1.32120 1.24813 0.99074 1.18328 1.07527 0.75670 0.75321 0.72654 1.93471 1.86957 1.43780 1.71778 1.93424 1.52729 1.80365 1.72210 1.51868 1.40952 1.39100 1.37479 1.19490 1.09156 1.00352 1.11710 0.87512 1.25306 0.98369 0.94552 0.99329 1.69690 1.39292 1.04659 1.37485 0.85925 0.80517 0.78984 0.79850 1.18794 1.20293 1.20503 1.21050 0.88732 0.96379 0.91636 0.87244 0.88168 0.85983 0.91494 0.91068 0.75382 0.85971 0.84965 0.88712 0.90568 0.89577 0.75200 0.91427 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.16 9.89 -36.03 -0.36 -1.52 16 3 C 0.06 0.48 6.64 36.00 0.24 0.72 16 4 O -0.14 -1.81 11.09 -29.62 -0.33 -2.14 16 5 N -0.60 -7.55 6.34 30.53 0.19 -7.36 16 6 C 0.58 9.63 7.92 -12.33 -0.10 9.53 16 7 O -0.51 -10.77 16.75 -12.83 -0.21 -10.98 16 8 C -0.16 -2.66 5.87 -104.97 -0.62 -3.27 16 9 C -0.05 -0.63 9.54 -39.19 -0.37 -1.01 16 10 C -0.15 -2.04 9.66 -39.64 -0.38 -2.43 16 11 C 0.05 0.87 5.88 -104.53 -0.61 0.26 16 12 C -0.15 -2.30 8.59 36.01 0.31 -1.99 16 13 C -0.66 -12.93 5.81 -39.64 -0.23 -13.16 16 14 S 2.60 57.15 4.90 -107.50 -0.53 56.62 16 15 O -0.97 -24.01 16.65 -57.17 -0.95 -24.96 16 16 O -1.00 -22.57 16.46 -57.17 -0.94 -23.51 16 17 N -0.94 -21.70 4.54 31.50 0.14 -21.56 16 18 C -0.26 -6.49 9.64 -15.06 -0.15 -6.63 16 19 H 0.11 2.59 7.80 -52.48 -0.41 2.18 16 20 C 0.03 0.81 5.50 -17.44 -0.10 0.71 16 21 N -0.87 -21.76 13.06 55.49 0.72 -21.03 16 22 Si 0.92 19.25 29.55 -169.99 -5.02 14.22 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.04 0.80 9.09 -39.18 -0.36 0.45 16 27 H 0.11 0.52 8.06 -52.48 -0.42 0.10 16 28 H 0.10 0.50 7.90 -52.48 -0.41 0.09 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.41 3.35 6.58 -40.82 -0.27 3.09 16 33 H 0.12 0.95 6.41 -52.48 -0.34 0.62 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.09 1.41 7.99 -51.93 -0.42 0.99 16 36 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 37 H 0.09 1.53 5.41 -51.93 -0.28 1.24 16 38 H 0.41 9.41 7.64 -34.47 -0.26 9.15 16 39 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.15 3.11 6.92 -52.49 -0.36 2.75 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -33.46 362.21 -8.18 -41.64 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.40 Total: 12.54 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.31 Total: -18.94 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 1.06 Total: -49.95 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.44 Total: -61.59 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 57.15 SS G_CDS: -0.53 Total: 56.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.46 -8.18 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158208492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds