Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47324 * 300.00203 * 3 2 1 6 6 H 1.48505 * 109.47143 * 60.00552 * 3 2 1 7 7 C 1.37875 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46966 * 185.11406 * 9 7 2 11 11 C 1.46952 * 110.99837 * 295.20057 * 10 9 7 12 12 C 1.53058 * 109.36368 * 183.19071 * 11 10 9 13 13 N 1.46957 * 109.36178 * 301.59764 * 12 11 10 14 14 C 1.38544 * 110.99625 * 183.18450 * 13 12 11 15 15 N 1.32508 * 120.12684 * 295.16215 * 14 13 12 16 16 C 1.31872 * 120.27612 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 119.26545 * 179.97438 * 16 15 14 18 18 N 1.31383 * 121.47054 * 359.95369 * 16 15 14 19 19 C 1.33892 * 121.92163 * 0.02562 * 18 16 15 20 20 C 1.37056 * 118.53900 * 0.02562 * 19 18 16 21 21 C 1.52094 * 115.80767 * 180.02562 * 20 19 18 22 22 S 1.83282 * 103.45268 * 342.60784 * 21 20 19 23 23 C 1.52162 * 125.75061 * 180.02562 * 19 18 16 24 24 C 1.46961 * 110.87948 * 59.32412 * 13 12 11 25 25 C 1.46955 * 111.00399 * 59.00529 * 10 9 7 26 26 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47207 * 65.11269 * 9 7 2 28 28 H 1.09000 * 109.47066 * 305.10660 * 9 7 2 29 29 H 1.09000 * 109.49040 * 63.22818 * 11 10 9 30 30 H 1.08999 * 109.49333 * 303.15674 * 11 10 9 31 31 H 1.09000 * 109.48857 * 181.63358 * 12 11 10 32 32 H 1.08997 * 109.50617 * 61.57961 * 12 11 10 33 33 H 1.08997 * 110.62726 * 101.10270 * 21 20 19 34 34 H 1.09003 * 110.62312 * 224.11849 * 21 20 19 35 35 H 1.08999 * 110.62562 * 315.89607 * 23 19 18 36 36 H 1.09001 * 110.62579 * 78.74624 * 23 19 18 37 37 H 1.09001 * 109.48501 * 60.64411 * 24 13 12 38 38 H 1.08999 * 109.48912 * 180.70258 * 24 13 12 39 39 H 1.09005 * 109.48384 * 296.77916 * 25 10 9 40 40 H 1.09005 * 109.49025 * 56.81825 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2009 -3.6130 0.1223 11 6 3.0801 -3.6873 -1.0529 12 6 3.9986 -4.9047 -0.9232 13 7 4.7851 -4.7922 0.3131 14 6 5.6809 -5.8428 0.4289 15 7 5.2365 -7.0835 0.5669 16 6 6.0865 -8.0856 0.6779 17 17 5.4757 -9.7005 0.8583 18 7 7.3854 -7.8891 0.6547 19 6 7.9141 -6.6666 0.5181 20 6 7.0665 -5.5960 0.4006 21 6 7.7330 -4.2374 0.2481 22 16 9.4499 -4.5387 0.8146 23 6 9.3997 -6.3397 0.4796 24 6 3.9058 -4.7179 1.4883 25 6 2.9873 -3.5006 1.3586 26 1 -0.4850 0.8401 0.0004 27 1 0.6945 -2.5974 -0.9325 28 1 0.5578 -2.5185 0.8404 29 1 3.6833 -2.7815 -1.1136 30 1 2.4749 -3.7828 -1.9544 31 1 4.6715 -4.9454 -1.7798 32 1 3.3968 -5.8129 -0.8901 33 1 7.7229 -3.9195 -0.7944 34 1 7.2443 -3.4968 0.8812 35 1 9.9341 -6.8898 1.2542 36 1 9.8162 -6.5608 -0.5031 37 1 3.3027 -5.6238 1.5489 38 1 4.5110 -4.6226 2.3898 39 1 3.5894 -2.5926 1.3253 40 1 2.3144 -3.4595 2.2152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = 72.761572 kcal Electronic energy + Delta-G solvation = -25060.004591 eV Core-core repulsion = 21448.453014 eV Total energy + Delta-G solvation = -3611.551577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82410 -38.97767 -37.31235 -35.94144 -35.14731 -33.11686 -32.08732 -30.60186 -29.66366 -28.47369 -26.98827 -25.14732 -23.29671 -23.18377 -22.80128 -21.58268 -19.58551 -18.51879 -17.79398 -16.63310 -16.37920 -16.20263 -15.72719 -15.24334 -14.88996 -14.79968 -14.52177 -14.34177 -14.23319 -14.05751 -13.76366 -13.22318 -13.05166 -12.43329 -12.13820 -12.07398 -12.01727 -11.85045 -11.70148 -11.39382 -11.11349 -10.96864 -10.90965 -10.74745 -10.61251 -10.56856 -10.24121 -9.97066 -9.81886 -9.61521 -9.50689 -8.83641 -8.49058 -8.17158 -7.28783 -6.08426 -4.17811 0.23540 0.39814 0.94964 1.28281 1.69167 3.03450 3.22937 3.23303 3.26663 3.31785 3.34487 4.00250 4.12720 4.31580 4.36068 4.59068 4.69500 4.86629 4.95921 5.03539 5.16369 5.22140 5.30687 5.37006 5.53366 5.56698 5.75506 5.81125 5.90402 6.04587 6.30101 6.45974 6.59659 6.68840 6.78692 6.95559 7.18350 7.38377 7.46196 7.83462 7.93403 8.15853 8.21678 8.92399 9.49646 10.96840 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.003319 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.209719 B = 8433.419899 C =10160.663276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.187 3.813 10 N -0.542 5.542 11 C 0.065 3.935 12 C 0.064 3.936 13 N -0.485 5.485 14 C 0.399 3.601 15 N -0.524 5.524 16 C 0.383 3.617 17 Cl 0.030 6.970 18 N -0.508 5.508 19 C 0.180 3.820 20 C -0.170 4.170 21 C -0.011 4.011 22 S -0.237 6.237 23 C -0.027 4.027 24 C 0.062 3.938 25 C 0.067 3.933 26 H 0.262 0.738 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.649 -14.678 0.442 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.062 3.938 10 N -0.267 5.267 11 C -0.064 4.064 12 C -0.063 4.063 13 N -0.210 5.210 14 C 0.157 3.843 15 N -0.244 5.244 16 C 0.087 3.913 17 Cl 0.058 6.942 18 N -0.226 5.226 19 C 0.037 3.963 20 C -0.178 4.178 21 C -0.160 4.160 22 S -0.010 6.010 23 C -0.175 4.175 24 C -0.065 4.065 25 C -0.062 4.062 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.947 -14.863 1.005 22.563 hybrid contribution -0.312 0.849 -0.514 1.040 sum 16.636 -14.013 0.491 21.757 Atomic orbital electron populations 1.69952 1.06046 1.26799 1.50049 1.24960 0.94741 0.99187 0.94842 0.86598 0.80160 0.83934 0.77683 1.19771 1.20970 1.20952 1.21771 0.93415 0.91961 1.51790 0.92236 1.19747 0.90752 0.85337 0.97966 1.62705 1.16801 1.46624 1.00539 1.21943 0.94138 0.95231 0.95066 1.22375 0.94836 1.00403 0.88641 1.60482 1.20219 1.34278 1.06011 1.20156 0.90638 0.86512 0.86976 1.68224 1.40452 0.99752 1.15942 1.22577 0.84986 0.89411 0.94293 1.98450 1.86183 1.14606 1.95008 1.67252 1.14013 1.24857 1.16441 1.21868 0.95776 0.87033 0.91635 1.21779 0.94030 0.97103 1.04874 1.22708 0.91218 0.95643 1.06403 1.88110 1.19806 1.06608 1.86505 1.22863 0.91416 0.95432 1.07826 1.22396 0.93677 1.00585 0.89813 1.21927 0.94869 0.94951 0.94446 0.92819 0.95333 0.94589 0.93067 0.90599 0.91131 0.92459 0.86628 0.85298 0.85363 0.85959 0.92328 0.91094 0.92859 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.55 -14.34 7.66 -34.44 -0.26 -14.60 16 8 H 0.06 1.54 5.82 -52.49 -0.31 1.23 16 9 C 0.19 4.58 5.14 -4.97 -0.03 4.55 16 10 N -0.54 -10.89 4.92 -235.91 -1.16 -12.05 16 11 C 0.07 1.16 5.32 -3.77 -0.02 1.14 16 12 C 0.06 0.94 5.47 -3.76 -0.02 0.92 16 13 N -0.49 -6.97 4.45 -172.61 -0.77 -7.74 16 14 C 0.40 5.36 5.36 -154.75 -0.83 4.54 16 15 N -0.52 -7.38 9.73 -10.79 -0.11 -7.49 16 16 C 0.38 5.00 8.18 -92.44 -0.76 4.25 16 17 Cl 0.03 0.33 29.27 -51.86 -1.52 -1.18 16 18 N -0.51 -6.25 10.38 -7.60 -0.08 -6.33 16 19 C 0.18 1.97 7.04 -81.40 -0.57 1.39 16 20 C -0.17 -1.97 5.96 -103.40 -0.62 -2.59 16 21 C -0.01 -0.11 7.10 36.70 0.26 0.15 16 22 S -0.24 -2.23 23.44 -107.50 -2.52 -4.75 16 23 C -0.03 -0.21 7.39 36.73 0.27 0.06 16 24 C 0.06 0.94 5.41 -3.77 -0.02 0.92 16 25 C 0.07 1.22 5.24 -3.77 -0.02 1.20 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 30 H 0.08 1.34 8.12 -51.93 -0.42 0.91 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.94 7.92 -51.93 -0.41 0.53 16 38 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 39 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -28.38 351.87 -13.03 -41.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.19 Total: -1.81 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.71 Total: 3.60 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -1.38 Total: -58.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.52 Total: -4.75 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.38 -13.03 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.173 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds