Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43203 * 120.00282 * 293.62638 * 3 2 1 5 5 N 3.51038 * 140.68607 * 293.63251 * 2 1 3 6 6 C 1.41127 * 119.99937 * 113.62865 * 3 2 1 7 7 C 1.38944 * 120.00104 * 354.74749 * 6 3 2 8 8 H 1.07999 * 119.99549 * 332.24280 * 7 6 3 9 9 C 1.40863 * 120.00324 * 152.24803 * 7 6 3 10 10 N 1.30317 * 119.99882 * 2.82094 * 9 7 6 11 11 Si 1.86802 * 120.00250 * 182.81842 * 9 7 6 12 12 H 1.48507 * 109.46567 * 59.99971 * 11 9 7 13 13 H 1.48493 * 109.47224 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47100 * 300.00159 * 11 9 7 15 15 N 1.38448 * 120.00211 * 174.74568 * 6 3 2 16 16 C 1.38730 * 119.99849 * 120.38141 * 15 6 3 17 17 C 1.39717 * 120.50407 * 354.08757 * 16 15 6 18 18 C 1.39259 * 118.18664 * 179.97438 * 17 16 15 19 19 C 1.48071 * 120.52401 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99905 * 185.13170 * 19 18 17 21 21 S 1.71198 * 120.00134 * 5.13463 * 19 18 17 22 22 N 1.33433 * 118.95307 * 359.97438 * 18 17 16 23 23 C 1.31544 * 120.90427 * 0.02562 * 22 18 17 24 24 C 1.50697 * 118.99300 * 179.97438 * 23 22 18 25 25 C 1.53001 * 117.50087 * 8.77161 * 24 23 22 26 26 C 1.52997 * 117.49852 * 300.11064 * 24 23 22 27 27 N 1.31850 * 122.01201 * 359.97438 * 23 22 18 28 28 H 0.97002 * 120.00130 * 185.00587 * 10 9 7 29 29 H 0.97001 * 119.99631 * 300.38342 * 15 6 3 30 30 H 1.07994 * 120.90759 * 359.70712 * 17 16 15 31 31 H 0.97001 * 120.00625 * 0.02562 * 20 19 18 32 32 H 0.97007 * 119.99994 * 179.97438 * 20 19 18 33 33 H 1.08999 * 115.55035 * 154.43677 * 24 23 22 34 34 H 1.09002 * 117.49731 * 0.02562 * 25 24 23 35 35 H 1.08998 * 117.49878 * 145.01762 * 25 24 23 36 36 H 1.09006 * 117.49974 * 214.97594 * 26 24 23 37 37 H 1.08993 * 117.50157 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.4961 1.1362 5 7 3.8519 -0.8916 2.0375 6 6 3.2734 0.4908 -1.1197 7 6 2.5829 0.8709 -2.2640 8 1 1.6341 0.4119 -2.4995 9 6 3.1204 1.8546 -3.1169 10 7 4.2906 2.3688 -2.8626 11 14 2.1560 2.4223 -4.6127 12 1 0.8579 2.9964 -4.1759 13 1 2.9349 3.4556 -5.3410 14 1 1.9086 1.2655 -5.5103 15 7 4.6535 0.5931 -1.0781 16 6 5.4285 -0.1025 -1.9947 17 6 4.8375 -1.0034 -2.8841 18 6 5.6609 -1.6751 -3.7842 19 6 5.0894 -2.6418 -4.7493 20 7 5.9049 -3.3621 -5.5446 21 16 3.3927 -2.8444 -4.8550 22 7 6.9731 -1.4339 -3.7631 23 6 7.4889 -0.5771 -2.9086 24 6 8.9767 -0.3380 -2.9220 25 6 9.7810 -0.9542 -4.0684 26 6 9.8876 -1.5385 -2.6576 27 7 6.7440 0.0789 -2.0407 28 1 4.6292 3.0967 -3.4070 29 1 5.0784 1.1510 -0.4080 30 1 3.7718 -1.1775 -2.8711 31 1 6.8663 -3.2477 -5.4846 32 1 5.5305 -3.9957 -6.1766 33 1 9.3004 0.6321 -2.5448 34 1 9.2339 -1.5322 -4.8133 35 1 10.6340 -0.3897 -4.4451 36 1 10.8108 -1.3582 -2.1068 37 1 9.4108 -2.5012 -2.4736 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = 154.204996 kcal Electronic energy + Delta-G solvation = -26101.149869 eV Core-core repulsion = 22392.022450 eV Total energy + Delta-G solvation = -3709.127419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93089 -38.10992 -37.30178 -36.44844 -35.34737 -34.79205 -33.93659 -32.77879 -31.39425 -29.64198 -27.28226 -26.18509 -25.04317 -22.70171 -22.38382 -21.76394 -20.77681 -19.07419 -18.71343 -17.99064 -17.41508 -17.10599 -16.32148 -16.02613 -15.30288 -15.10542 -14.91647 -14.86071 -14.29701 -14.02445 -13.72929 -13.03898 -12.91143 -12.65838 -12.35026 -12.24865 -11.92610 -11.77840 -11.76687 -11.61864 -11.59102 -11.35150 -11.17534 -11.03951 -11.00503 -10.77517 -10.67020 -10.55764 -10.42060 -10.05359 -9.46138 -9.11423 -8.53457 -8.13121 -7.90473 -7.55087 -7.27617 -5.55784 0.08215 1.37553 1.80779 2.04904 2.20196 2.71393 2.75702 2.86013 3.18694 3.38763 3.43377 3.62419 3.75379 3.80777 3.99220 4.09971 4.19532 4.27229 4.33412 4.76810 4.87439 4.99334 5.06355 5.19087 5.26528 5.48623 5.53775 5.66120 5.76892 6.02607 6.08552 6.10205 6.14411 6.20065 6.38477 6.46033 6.80268 6.95055 7.04447 7.24492 7.52794 7.65391 7.99620 8.09616 8.57238 8.86004 9.05997 9.12489 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.005023 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.677028 B = 5572.820519 C = 6250.366004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.324 3.676 3 C -0.293 4.293 4 C 0.306 3.694 5 N -0.525 5.525 6 C 0.368 3.632 7 C -0.369 4.369 8 H 0.119 0.881 9 C 0.070 3.930 10 N -0.728 5.728 11 Si 0.923 3.077 12 H -0.250 1.250 13 H -0.270 1.270 14 H -0.243 1.243 15 N -0.614 5.614 16 C 0.485 3.515 17 C -0.184 4.184 18 C 0.149 3.851 19 C 0.405 3.595 20 N -0.749 5.749 21 S -0.518 6.518 22 N -0.561 5.561 23 C 0.386 3.614 24 C -0.091 4.091 25 C -0.155 4.155 26 C -0.158 4.158 27 N -0.554 5.554 28 H 0.303 0.697 29 H 0.411 0.589 30 H 0.181 0.819 31 H 0.411 0.589 32 H 0.420 0.580 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.162 -2.035 -10.726 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C 0.016 3.984 3 C -0.312 4.312 4 C -0.002 4.002 5 N -0.207 5.207 6 C 0.265 3.735 7 C -0.397 4.397 8 H 0.137 0.863 9 C -0.161 4.161 10 N -0.347 5.347 11 Si 0.743 3.257 12 H -0.173 1.173 13 H -0.195 1.195 14 H -0.166 1.166 15 N -0.236 5.236 16 C 0.238 3.762 17 C -0.218 4.218 18 C 0.008 3.992 19 C 0.149 3.851 20 N -0.283 5.283 21 S -0.386 6.386 22 N -0.284 5.284 23 C 0.115 3.885 24 C -0.111 4.111 25 C -0.193 4.193 26 C -0.196 4.196 27 N -0.278 5.278 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.198 0.802 31 H 0.244 0.756 32 H 0.254 0.746 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.259 -2.590 -9.590 15.779 hybrid contribution 0.423 0.735 -0.845 1.197 sum 12.682 -1.855 -10.436 16.528 Atomic orbital electron populations 1.81075 1.12103 1.16803 1.10316 1.24551 0.91165 0.90774 0.91953 1.12874 0.83235 1.39277 0.95768 1.25212 0.92560 0.90706 0.91738 1.81094 1.09695 1.17625 1.12304 1.16780 0.79232 0.86414 0.91097 1.20363 1.04925 1.12565 1.01869 0.86308 1.26555 0.94683 0.95513 0.99310 1.69499 1.14339 1.16314 1.34589 0.85980 0.80534 0.80176 0.78975 1.17322 1.19460 1.16643 1.41353 1.04066 1.46710 1.31494 1.18036 0.86811 0.85707 0.85599 1.22884 1.04720 0.97714 0.96442 1.19736 0.89529 0.95291 0.94671 1.24111 0.96342 0.82346 0.82323 1.43300 1.11230 1.37985 1.35743 1.93361 0.92594 1.75257 1.77415 1.67740 1.11791 1.21764 1.27055 1.21354 0.94591 0.86835 0.85677 1.20545 0.85217 0.99395 1.05931 1.22968 1.01267 1.03233 0.91850 1.22969 1.00391 0.96894 0.99354 1.67458 1.05034 1.28650 1.26681 0.88475 0.75099 0.80174 0.75590 0.74579 0.85437 0.87636 0.88477 0.88170 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.18 18.54 41.84 0.78 -11.41 16 2 C 0.32 7.24 14.05 -22.47 -0.32 6.92 16 3 C -0.29 -6.20 5.88 -104.95 -0.62 -6.81 16 4 C 0.31 6.71 14.82 -22.46 -0.33 6.38 16 5 N -0.53 -12.08 18.54 41.85 0.78 -11.30 16 6 C 0.37 7.35 5.01 -83.52 -0.42 6.93 16 7 C -0.37 -7.32 6.56 -38.33 -0.25 -7.58 16 8 H 0.12 2.41 7.28 -52.49 -0.38 2.03 16 9 C 0.07 1.31 5.21 -17.20 -0.09 1.22 16 10 N -0.73 -13.56 10.92 55.60 0.61 -12.95 16 11 Si 0.92 15.23 29.57 -169.99 -5.03 10.20 16 12 H -0.25 -4.19 7.11 56.52 0.40 -3.79 16 13 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 14 H -0.24 -4.20 7.11 56.52 0.40 -3.80 16 15 N -0.61 -11.58 3.31 -9.58 -0.03 -11.61 16 16 C 0.48 9.03 6.28 -154.66 -0.97 8.05 16 17 C -0.18 -3.40 8.22 -38.65 -0.32 -3.72 16 18 C 0.15 2.42 6.78 -82.76 -0.56 1.86 16 19 C 0.41 5.83 7.36 -12.23 -0.09 5.74 16 20 N -0.75 -6.98 8.86 32.78 0.29 -6.69 16 21 S -0.52 -9.21 29.30 -107.50 -3.15 -12.36 16 22 N -0.56 -8.25 8.60 -7.44 -0.06 -8.31 16 23 C 0.39 5.97 7.31 -157.36 -1.15 4.82 16 24 C -0.09 -1.07 6.23 -91.77 -0.57 -1.64 16 25 C -0.16 -1.40 10.01 -26.69 -0.27 -1.67 16 26 C -0.16 -1.50 10.24 -26.69 -0.27 -1.77 16 27 N -0.55 -9.77 10.35 -9.95 -0.10 -9.87 16 28 H 0.30 5.27 8.29 -40.82 -0.34 4.93 16 29 H 0.41 7.57 8.94 -40.82 -0.37 7.21 16 30 H 0.18 3.58 5.20 -52.49 -0.27 3.31 16 31 H 0.41 3.12 8.22 -40.82 -0.34 2.78 16 32 H 0.42 2.97 8.81 -40.82 -0.36 2.61 16 33 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.11 0.97 7.54 -51.93 -0.39 0.58 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -26.36 360.10 -9.66 -36.02 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -2.93 Total: 14.13 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: -6.23 Total: 18.73 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: 2.25 Total: -72.14 kcal Atomic # 14 Polarization: 15.23 SS G_CDS: -5.03 Total: 10.20 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -3.15 Total: -12.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.36 -9.66 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.221 kcal (2) G-P(sol) polarization free energy of solvation -26.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds