Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43203 * 120.00282 * 293.62638 * 3 2 1 5 5 N 3.51038 * 140.68607 * 293.63251 * 2 1 3 6 6 C 1.41127 * 119.99937 * 113.62865 * 3 2 1 7 7 C 1.38944 * 120.00104 * 354.74749 * 6 3 2 8 8 H 1.07999 * 119.99549 * 332.24280 * 7 6 3 9 9 C 1.40863 * 120.00324 * 152.24803 * 7 6 3 10 10 N 1.30317 * 119.99882 * 2.82094 * 9 7 6 11 11 Si 1.86802 * 120.00250 * 182.81842 * 9 7 6 12 12 H 1.48507 * 109.46567 * 59.99971 * 11 9 7 13 13 H 1.48493 * 109.47224 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47100 * 300.00159 * 11 9 7 15 15 N 1.38448 * 120.00211 * 174.74568 * 6 3 2 16 16 C 1.38730 * 119.99849 * 120.38141 * 15 6 3 17 17 C 1.39717 * 120.50407 * 354.08757 * 16 15 6 18 18 C 1.39259 * 118.18664 * 179.97438 * 17 16 15 19 19 C 1.48071 * 120.52401 * 179.97438 * 18 17 16 20 20 N 1.34775 * 119.99905 * 185.13170 * 19 18 17 21 21 S 1.71198 * 120.00134 * 5.13463 * 19 18 17 22 22 N 1.33433 * 118.95307 * 359.97438 * 18 17 16 23 23 C 1.31544 * 120.90427 * 0.02562 * 22 18 17 24 24 C 1.50697 * 118.99300 * 179.97438 * 23 22 18 25 25 C 1.53001 * 117.50087 * 8.77161 * 24 23 22 26 26 C 1.52997 * 117.49852 * 300.11064 * 24 23 22 27 27 N 1.31850 * 122.01201 * 359.97438 * 23 22 18 28 28 H 0.97002 * 120.00130 * 185.00587 * 10 9 7 29 29 H 0.97001 * 119.99631 * 300.38342 * 15 6 3 30 30 H 1.07994 * 120.90759 * 359.70712 * 17 16 15 31 31 H 0.97001 * 120.00625 * 0.02562 * 20 19 18 32 32 H 0.97007 * 119.99994 * 179.97438 * 20 19 18 33 33 H 1.08999 * 115.55035 * 154.43677 * 24 23 22 34 34 H 1.09002 * 117.49731 * 0.02562 * 25 24 23 35 35 H 1.08998 * 117.49878 * 145.01762 * 25 24 23 36 36 H 1.09006 * 117.49974 * 214.97594 * 26 24 23 37 37 H 1.08993 * 117.50157 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.4961 1.1362 5 7 3.8519 -0.8916 2.0375 6 6 3.2734 0.4908 -1.1197 7 6 2.5829 0.8709 -2.2640 8 1 1.6341 0.4119 -2.4995 9 6 3.1204 1.8546 -3.1169 10 7 4.2906 2.3688 -2.8626 11 14 2.1560 2.4223 -4.6127 12 1 0.8579 2.9964 -4.1759 13 1 2.9349 3.4556 -5.3410 14 1 1.9086 1.2655 -5.5103 15 7 4.6535 0.5931 -1.0781 16 6 5.4285 -0.1025 -1.9947 17 6 4.8375 -1.0034 -2.8841 18 6 5.6609 -1.6751 -3.7842 19 6 5.0894 -2.6418 -4.7493 20 7 5.9049 -3.3621 -5.5446 21 16 3.3927 -2.8444 -4.8550 22 7 6.9731 -1.4339 -3.7631 23 6 7.4889 -0.5771 -2.9086 24 6 8.9767 -0.3380 -2.9220 25 6 9.7810 -0.9542 -4.0684 26 6 9.8876 -1.5385 -2.6576 27 7 6.7440 0.0789 -2.0407 28 1 4.6292 3.0967 -3.4070 29 1 5.0784 1.1510 -0.4080 30 1 3.7718 -1.1775 -2.8711 31 1 6.8663 -3.2477 -5.4846 32 1 5.5305 -3.9957 -6.1766 33 1 9.3004 0.6321 -2.5448 34 1 9.2339 -1.5322 -4.8133 35 1 10.6340 -0.3897 -4.4451 36 1 10.8108 -1.3582 -2.1068 37 1 9.4108 -2.5012 -2.4736 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = 140.305781 kcal Electronic energy + Delta-G solvation = -26101.752584 eV Core-core repulsion = 22392.022450 eV Total energy + Delta-G solvation = -3709.730134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.080 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23178 -39.53465 -38.33380 -37.65696 -36.94133 -36.56862 -35.37965 -34.13703 -32.77690 -31.10269 -28.89813 -27.42256 -26.23258 -24.03988 -23.19261 -23.01076 -22.05357 -20.62763 -19.87020 -19.33796 -18.87823 -18.43116 -17.81713 -17.09405 -16.62680 -16.38113 -16.24579 -16.12256 -15.40514 -15.24168 -15.05710 -14.65962 -14.42101 -14.13970 -13.93433 -13.54837 -13.48645 -13.39174 -13.16993 -13.13728 -12.88162 -12.76817 -12.48820 -12.46019 -12.28030 -12.02839 -11.87996 -11.72629 -11.51386 -11.30148 -10.67668 -10.43558 -10.01280 -9.44087 -9.36820 -8.93453 -8.76792 -7.20623 -1.18357 0.02002 0.45035 0.75666 0.79354 1.33851 1.43285 1.49632 1.88713 2.02686 2.06175 2.18169 2.20598 2.48921 2.49732 2.58555 2.67296 3.11888 3.22020 3.34827 3.58404 3.79246 3.88010 4.01470 4.19214 4.26062 4.46343 4.51269 4.63778 4.74531 4.86546 4.99795 5.11730 5.24356 5.32740 5.35590 5.39770 5.56180 5.80585 5.96366 6.00367 6.11809 6.48935 6.64102 7.10535 7.21722 7.31013 7.64482 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.005023 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.677028 B = 5572.820519 C = 6250.366004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.330 3.670 3 C -0.307 4.307 4 C 0.315 3.685 5 N -0.549 5.549 6 C 0.370 3.630 7 C -0.365 4.365 8 H 0.110 0.890 9 C 0.050 3.950 10 N -0.727 5.727 11 Si 0.968 3.032 12 H -0.253 1.253 13 H -0.254 1.254 14 H -0.256 1.256 15 N -0.616 5.616 16 C 0.476 3.524 17 C -0.211 4.211 18 C 0.153 3.847 19 C 0.431 3.569 20 N -0.703 5.703 21 S -0.605 6.605 22 N -0.540 5.540 23 C 0.379 3.621 24 C -0.119 4.119 25 C -0.134 4.134 26 C -0.147 4.147 27 N -0.566 5.566 28 H 0.312 0.688 29 H 0.410 0.590 30 H 0.162 0.838 31 H 0.427 0.573 32 H 0.437 0.563 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -1.923 -12.876 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C 0.023 3.977 3 C -0.326 4.326 4 C 0.008 3.992 5 N -0.232 5.232 6 C 0.266 3.734 7 C -0.392 4.392 8 H 0.128 0.872 9 C -0.180 4.180 10 N -0.346 5.346 11 Si 0.787 3.213 12 H -0.177 1.177 13 H -0.178 1.178 14 H -0.180 1.180 15 N -0.239 5.239 16 C 0.230 3.770 17 C -0.243 4.243 18 C 0.010 3.990 19 C 0.167 3.833 20 N -0.235 5.235 21 S -0.474 6.474 22 N -0.262 5.262 23 C 0.110 3.890 24 C -0.140 4.140 25 C -0.172 4.172 26 C -0.185 4.185 27 N -0.290 5.290 28 H 0.125 0.875 29 H 0.248 0.752 30 H 0.180 0.820 31 H 0.263 0.737 32 H 0.274 0.726 33 H 0.149 0.851 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.405 -2.501 -11.766 19.545 hybrid contribution -0.245 0.680 -0.335 0.797 sum 15.161 -1.821 -12.101 19.484 Atomic orbital electron populations 1.81056 1.12667 1.18127 1.11120 1.24724 0.91369 0.90251 0.91376 1.12886 0.82731 1.40766 0.96243 1.25283 0.92157 0.90230 0.91522 1.81076 1.10346 1.18847 1.12935 1.16685 0.79848 0.86150 0.90732 1.20466 1.04490 1.12235 1.02037 0.87201 1.26971 0.95337 0.95242 1.00464 1.69489 1.14397 1.15980 1.34687 0.85326 0.79683 0.79573 0.76686 1.17665 1.17752 1.18036 1.41224 1.03554 1.47159 1.31932 1.18119 0.87317 0.85863 0.85675 1.22759 1.04259 0.99278 0.98027 1.19915 0.89929 0.94919 0.94206 1.23577 0.95036 0.82279 0.82392 1.43227 1.11714 1.35384 1.33131 1.93598 0.95973 1.77908 1.79940 1.67877 1.10521 1.21283 1.26476 1.22211 0.96171 0.85913 0.84687 1.20718 0.83116 1.00763 1.09358 1.23105 1.00809 1.02039 0.91211 1.23064 1.00100 0.95223 1.00100 1.67538 1.04582 1.29397 1.27475 0.87521 0.75165 0.82016 0.73657 0.72582 0.85075 0.87577 0.85997 0.86057 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -26.21 18.54 19.00 0.35 -25.85 16 2 C 0.33 15.17 14.05 88.33 1.24 16.42 16 3 C -0.31 -13.38 5.88 -20.08 -0.12 -13.50 16 4 C 0.31 14.17 14.82 88.33 1.31 15.48 16 5 N -0.55 -25.73 18.54 19.01 0.35 -25.37 16 6 C 0.37 15.13 5.01 38.98 0.20 15.32 16 7 C -0.36 -14.74 6.56 23.08 0.15 -14.59 16 8 H 0.11 4.62 7.28 -2.91 -0.02 4.60 16 9 C 0.05 1.86 5.21 85.56 0.45 2.31 16 10 N -0.73 -26.44 10.92 21.98 0.24 -26.20 16 11 Si 0.97 30.57 29.57 68.60 2.03 32.60 16 12 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 13 H -0.25 -7.35 7.11 99.48 0.71 -6.64 16 14 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 15 N -0.62 -23.60 3.31 -184.24 -0.61 -24.21 16 16 C 0.48 17.73 6.28 133.16 0.84 18.57 16 17 C -0.21 -7.81 8.22 22.87 0.19 -7.62 16 18 C 0.15 4.79 6.78 41.76 0.28 5.07 16 19 C 0.43 11.76 7.36 86.85 0.64 12.40 16 20 N -0.70 -10.85 8.86 -50.19 -0.44 -11.30 16 21 S -0.61 -21.83 29.30 -56.49 -1.66 -23.49 16 22 N -0.54 -14.63 8.60 -177.46 -1.53 -16.15 16 23 C 0.38 11.02 7.31 138.81 1.01 12.04 16 24 C -0.12 -2.48 6.23 -11.54 -0.07 -2.55 16 25 C -0.13 -1.85 10.01 30.62 0.31 -1.55 16 26 C -0.15 -2.26 10.24 30.62 0.31 -1.95 16 27 N -0.57 -19.52 10.35 -185.40 -1.92 -21.43 16 28 H 0.31 10.35 8.29 -92.71 -0.77 9.58 16 29 H 0.41 15.40 8.94 -92.71 -0.83 14.57 16 30 H 0.16 6.67 5.20 -2.91 -0.02 6.65 16 31 H 0.43 4.65 8.22 -92.71 -0.76 3.89 16 32 H 0.44 4.72 8.81 -92.70 -0.82 3.90 16 33 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.11 1.47 7.54 -2.39 -0.02 1.46 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.38 8.14 -2.38 -0.02 1.37 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -58.70 360.10 2.36 -56.33 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -1.19 Total: 29.24 kcal Atomic # 6 Polarization: 49.11 SS G_CDS: 6.73 Total: 55.84 kcal Atomic # 7 Polarization: -146.97 SS G_CDS: -3.55 Total: -150.52 kcal Atomic # 14 Polarization: 30.57 SS G_CDS: 2.03 Total: 32.60 kcal Atomic # 16 Polarization: -21.83 SS G_CDS: -1.66 Total: -23.49 kcal Total: -58.70 2.36 -56.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.637 kcal (2) G-P(sol) polarization free energy of solvation -58.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds