Wall clock time and date at job start Sat Apr 11 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99882 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40416 * 293.54030 * 9 7 2 11 11 O 1.42097 * 106.40207 * 66.46151 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.97438 * 9 7 2 13 13 C 1.49781 * 126.11794 * 269.68542 * 12 9 7 14 14 C 1.50470 * 102.29484 * 205.25690 * 13 12 9 15 15 H 1.09003 * 109.57921 * 69.38497 * 14 13 12 16 16 C 1.50111 * 126.71887 * 205.40556 * 14 13 12 17 17 N 1.49305 * 104.76642 * 143.85631 * 16 14 13 18 18 C 1.34777 * 126.11496 * 172.53092 * 17 16 14 19 19 O 1.21695 * 120.00032 * 180.02562 * 18 17 16 20 20 C 1.46660 * 120.00191 * 0.02562 * 18 17 16 21 21 C 1.36544 * 125.99225 * 180.02562 * 20 18 17 22 22 C 1.40356 * 106.70750 * 179.97438 * 21 20 18 23 23 C 1.35132 * 107.11914 * 359.97438 * 22 21 20 24 24 O 1.33928 * 108.76368 * 359.77302 * 23 22 21 25 25 C 1.49778 * 107.77121 * 352.53196 * 17 16 14 26 26 C 1.50721 * 102.17183 * 334.67462 * 25 17 16 27 27 H 1.09001 * 110.06407 * 291.34832 * 26 25 17 28 28 C 1.49307 * 126.11337 * 90.00006 * 12 9 7 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.08995 * 110.86419 * 323.52287 * 13 12 9 31 31 H 1.09009 * 110.85785 * 87.17556 * 13 12 9 32 32 H 1.09002 * 110.38211 * 25.03962 * 16 14 13 33 33 H 1.09000 * 110.47669 * 262.72316 * 16 14 13 34 34 H 1.07999 * 126.63828 * 359.92401 * 21 20 18 35 35 H 1.08008 * 126.43914 * 179.97438 * 22 21 20 36 36 H 1.07998 * 125.61624 * 179.97438 * 23 22 21 37 37 H 1.09006 * 110.86450 * 216.50617 * 25 17 16 38 38 H 1.09007 * 110.86413 * 92.84257 * 25 17 16 39 39 H 1.08997 * 110.37929 * 306.27023 * 28 12 9 40 40 H 1.08996 * 110.37762 * 68.51917 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7199 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4520 -2.7955 -1.2494 12 7 2.2484 -3.9353 0.0005 13 6 2.8432 -4.5878 -1.2094 14 6 3.2427 -5.9388 -0.6810 15 1 2.3496 -6.5246 -0.4631 16 6 4.3239 -6.8296 -1.2204 17 7 4.9220 -7.4753 -0.0143 18 6 5.8374 -8.4645 -0.0144 19 8 6.2506 -8.9112 1.0395 20 6 6.3356 -9.0025 -1.2845 21 6 7.2576 -9.9995 -1.4271 22 6 7.4346 -10.1911 -2.8062 23 6 6.6228 -9.3142 -3.4371 24 8 5.9583 -8.6034 -2.5169 25 6 4.3227 -6.8272 1.1957 26 6 3.9271 -5.4722 0.6675 27 1 4.8170 -4.8850 0.4403 28 6 2.8461 -4.5812 1.2067 29 1 -0.4850 -0.8401 -0.0004 30 1 2.1017 -4.6844 -2.0024 31 1 3.7163 -4.0362 -1.5581 32 1 5.0745 -6.2397 -1.7465 33 1 3.9010 -7.5836 -1.8842 34 1 7.7548 -10.5360 -0.6326 35 1 8.0956 -10.9052 -3.2750 36 1 6.5236 -9.2067 -4.5072 37 1 5.0614 -6.7330 1.9917 38 1 3.4484 -7.3802 1.5394 39 1 3.2709 -3.8274 1.8696 40 1 2.0949 -5.1693 1.7338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:20 Heat of formation + Delta-G solvation = -69.135411 kcal Electronic energy + Delta-G solvation = -27464.695480 eV Core-core repulsion = 23373.988872 eV Total energy + Delta-G solvation = -4090.706608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.01235 -40.78486 -38.81886 -35.60988 -35.58677 -34.45778 -33.43274 -33.22949 -31.33699 -30.59047 -29.74322 -26.67234 -25.78579 -25.40435 -22.95126 -22.08952 -20.69474 -20.52983 -20.12716 -19.33920 -18.24216 -17.65993 -17.05103 -16.71060 -16.58789 -16.23454 -15.55695 -15.22457 -14.71090 -14.47602 -14.21624 -14.01317 -13.73920 -13.59069 -13.44572 -13.28574 -13.06401 -12.89468 -12.77012 -12.52500 -12.19526 -11.81473 -11.58163 -11.12539 -11.08127 -10.95560 -10.88511 -10.67823 -10.59106 -10.48215 -10.42045 -10.33144 -10.20347 -9.22697 -9.20917 -8.91576 -8.89735 -8.25188 -7.22124 -5.44107 0.73905 1.89829 2.00372 2.24829 2.68130 2.89492 3.20141 3.20968 3.42374 3.58275 4.00709 4.18592 4.24474 4.53773 4.55585 4.61230 4.66770 4.76620 4.98291 5.13641 5.19264 5.24100 5.27375 5.39589 5.39987 5.46786 5.50993 5.51906 5.59976 5.68589 5.78897 5.83257 5.89594 5.95759 6.00284 6.13988 6.18904 6.49750 6.55438 7.06395 7.07545 7.56569 7.70959 8.00385 8.57052 10.15292 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022405 B = 0.002650 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.425078 B =10561.689696 C =10802.969009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.090 3.910 3 Si 1.080 2.920 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.276 1.276 7 C -1.084 5.084 8 H 0.102 0.898 9 S 2.706 3.294 10 O -1.005 7.005 11 O -1.006 7.006 12 N -1.023 6.023 13 C 0.150 3.850 14 C -0.138 4.138 15 H 0.092 0.908 16 C 0.130 3.870 17 N -0.618 5.618 18 C 0.619 3.381 19 O -0.523 6.523 20 C -0.073 4.073 21 C -0.122 4.122 22 C -0.227 4.227 23 C -0.007 4.007 24 O -0.159 6.159 25 C 0.135 3.865 26 C -0.135 4.135 27 H 0.093 0.907 28 C 0.153 3.847 29 H 0.276 0.724 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.211 0.789 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 -17.070 -5.719 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.129 4.129 3 Si 0.903 3.097 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.201 1.201 7 C -1.218 5.218 8 H 0.120 0.880 9 S 2.809 3.191 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.859 5.859 13 C 0.024 3.976 14 C -0.158 4.158 15 H 0.111 0.889 16 C 0.007 3.993 17 N -0.352 5.352 18 C 0.407 3.593 19 O -0.402 6.402 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.246 4.246 23 C -0.077 4.077 24 O -0.054 6.054 25 C 0.014 3.986 26 C -0.156 4.156 27 H 0.112 0.888 28 C 0.027 3.973 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.861 -15.623 -5.181 20.888 hybrid contribution 1.009 -1.549 -0.225 1.862 sum 13.870 -17.172 -5.406 22.726 Atomic orbital electron populations 1.70866 1.07186 1.31932 1.37337 1.25988 0.95122 1.03944 0.87824 0.83444 0.75310 0.73313 0.77666 1.19577 1.20084 1.20098 1.31497 1.07985 1.12474 1.69891 0.87965 1.00662 0.72148 0.73403 0.72853 1.93421 1.72869 1.87693 1.45576 1.93414 1.72935 1.87720 1.45582 1.60133 1.61597 1.53919 1.10264 1.20920 0.98724 0.89669 0.88265 1.22387 0.98562 0.97001 0.97870 0.88922 1.21197 0.95318 0.95965 0.86781 1.49734 1.40892 1.35726 1.08859 1.16123 0.78478 0.78808 0.85854 1.90895 1.59065 1.60062 1.30152 1.21992 1.04202 1.02634 0.83714 1.21974 0.97727 0.97103 0.97451 1.21868 1.05022 1.04168 0.93499 1.24475 0.94716 0.93595 0.94947 1.84168 1.54282 1.52402 1.14537 1.21443 0.98756 0.91156 0.87231 1.22438 0.99865 0.95703 0.97569 0.88846 1.20571 0.93799 0.95222 0.87665 0.91233 0.89467 0.91259 0.90266 0.89874 0.82262 0.82606 0.77291 0.89202 0.90090 0.90482 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.52 13.66 55.43 0.76 -24.76 16 2 C 0.09 2.52 5.46 -17.82 -0.10 2.42 16 3 Si 1.08 23.60 29.90 -169.99 -5.08 18.52 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -1.08 -29.28 9.74 30.60 0.30 -28.98 16 8 H 0.10 2.55 7.81 -52.48 -0.41 2.14 16 9 S 2.71 68.73 4.62 -107.50 -0.50 68.24 16 10 O -1.01 -28.04 17.27 -57.17 -0.99 -29.02 16 11 O -1.01 -27.82 17.06 -57.17 -0.98 -28.80 16 12 N -1.02 -19.29 3.82 -112.61 -0.43 -19.72 16 13 C 0.15 2.23 6.98 -3.48 -0.02 2.21 16 14 C -0.14 -1.62 2.90 -90.42 -0.26 -1.88 16 15 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.13 1.30 5.47 -3.92 -0.02 1.28 16 17 N -0.62 -7.10 3.43 -173.19 -0.59 -7.70 16 18 C 0.62 7.92 7.85 -12.86 -0.10 7.82 16 19 O -0.52 -8.09 17.20 5.19 0.09 -8.00 16 20 C -0.07 -0.80 6.96 -36.80 -0.26 -1.06 16 21 C -0.12 -1.15 10.62 -39.40 -0.42 -1.57 16 22 C -0.23 -1.59 10.87 -39.89 -0.43 -2.02 16 23 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 24 O -0.16 -1.47 8.36 5.00 0.04 -1.42 16 25 C 0.14 1.49 6.81 -3.36 -0.02 1.46 16 26 C -0.14 -1.62 2.93 -90.30 -0.26 -1.88 16 27 H 0.09 1.11 8.13 -51.93 -0.42 0.68 16 28 C 0.15 2.34 6.92 -3.92 -0.03 2.31 16 29 H 0.28 8.54 6.52 -40.82 -0.27 8.28 16 30 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.08 0.76 7.39 -51.93 -0.38 0.37 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.21 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -36.72 351.07 -8.57 -45.29 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.91 Total: 1.67 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.27 Total: -19.58 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.27 Total: -52.18 kcal Atomic # 8 Polarization: -65.42 SS G_CDS: -1.83 Total: -67.25 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.08 Total: 18.52 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -0.50 Total: 68.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.72 -8.57 -45.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.843 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds