Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99833 * 2 1 4 4 H 1.48507 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47270 * 300.00133 * 3 2 1 6 6 H 1.48506 * 109.47264 * 60.00199 * 3 2 1 7 7 C 1.37878 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99860 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00090 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40388 * 66.46690 * 9 7 2 11 11 O 1.42098 * 106.40389 * 293.54061 * 9 7 2 12 12 N 1.65605 * 107.21639 * 180.02562 * 9 7 2 13 13 C 1.49336 * 126.13488 * 269.97623 * 12 9 7 14 14 C 1.49609 * 104.60337 * 173.10876 * 13 12 9 15 15 H 1.08998 * 108.41654 * 281.97823 * 14 13 12 16 16 C 1.49749 * 128.49181 * 147.42763 * 14 13 12 17 17 N 1.49556 * 104.39867 * 211.89406 * 16 14 13 18 18 C 1.34777 * 126.21320 * 186.72142 * 17 16 14 19 19 O 1.21693 * 120.00555 * 0.02562 * 18 17 16 20 20 C 1.46663 * 119.99551 * 179.97438 * 18 17 16 21 21 C 1.36546 * 125.98233 * 179.71856 * 20 18 17 22 22 C 1.40366 * 106.70385 * 179.90934 * 21 20 18 23 23 C 1.35129 * 107.11390 * 0.34886 * 22 21 20 24 24 O 1.33928 * 108.77159 * 359.78264 * 23 22 21 25 25 C 1.49811 * 107.56761 * 6.74416 * 17 16 14 26 26 C 1.51567 * 102.08332 * 26.75923 * 25 17 16 27 27 H 1.09006 * 111.43622 * 71.28385 * 26 25 17 28 28 C 1.49690 * 126.13146 * 90.00140 * 12 9 7 29 29 H 0.96995 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.40909 * 291.88720 * 13 12 9 31 31 H 1.08998 * 110.41150 * 54.20928 * 13 12 9 32 32 H 1.09002 * 110.44897 * 93.16293 * 16 14 13 33 33 H 1.09004 * 110.44895 * 330.62414 * 16 14 13 34 34 H 1.07992 * 126.65034 * 0.03638 * 21 20 18 35 35 H 1.07999 * 126.44450 * 180.15220 * 22 21 20 36 36 H 1.08005 * 125.61569 * 179.77868 * 23 22 21 37 37 H 1.09002 * 110.91369 * 144.95734 * 25 17 16 38 38 H 1.08999 * 110.90653 * 268.53378 * 25 17 16 39 39 H 1.08991 * 110.82518 * 35.83184 * 28 12 9 40 40 H 1.08994 * 110.99450 * 272.34664 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7951 -1.2501 11 8 0.4520 -2.7956 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 2.8462 -4.5820 -1.2066 14 6 3.9135 -5.4790 -0.6638 15 1 4.7807 -4.8689 -0.4114 16 6 4.3851 -6.7959 -1.1984 17 7 4.7937 -7.5659 0.0169 18 6 5.4048 -8.7671 0.0303 19 8 5.6740 -9.3246 -1.0174 20 6 5.7462 -9.4018 1.3076 21 6 6.3580 -10.6126 1.4636 22 6 6.4901 -10.8229 2.8451 23 6 5.9527 -9.7485 3.4640 24 8 5.5056 -8.8945 2.5343 25 6 4.4000 -6.7596 1.2165 26 6 3.2326 -5.9513 0.6864 27 1 2.3548 -6.5775 0.5257 28 6 2.8480 -4.5832 1.2085 29 1 -0.4850 0.8400 0.0004 30 1 2.0937 -5.1648 -1.7378 31 1 3.2787 -3.8298 -1.8663 32 1 5.2369 -6.6539 -1.8635 33 1 3.5755 -7.3076 -1.7190 34 1 6.6800 -11.2783 0.6766 35 1 6.9344 -11.6831 3.3235 36 1 5.8935 -9.6026 4.5325 37 1 4.0850 -7.4075 2.0345 38 1 5.2145 -6.1071 1.5311 39 1 2.1124 -4.6664 2.0084 40 1 3.7277 -4.0369 1.5485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -65.572524 kcal Electronic energy + Delta-G solvation = -27411.085302 eV Core-core repulsion = 23320.533193 eV Total energy + Delta-G solvation = -4090.552109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98920 -40.68348 -38.75001 -35.47583 -35.27770 -34.00524 -33.40578 -33.11209 -31.27866 -30.44856 -29.69528 -26.57145 -26.17013 -25.46996 -22.91814 -22.07251 -20.72251 -20.36210 -20.07016 -18.79280 -18.05208 -17.37338 -16.93337 -16.65104 -16.51724 -16.21967 -15.50032 -15.14757 -14.96792 -14.34054 -14.11364 -14.03408 -13.64079 -13.51655 -13.38411 -13.16990 -12.95093 -12.80494 -12.56389 -12.26545 -12.07816 -11.74619 -11.46261 -11.26441 -11.25731 -10.84175 -10.76203 -10.61509 -10.39540 -10.34622 -10.31061 -10.24810 -10.10953 -9.29085 -9.17854 -8.98347 -8.84868 -8.30078 -6.73307 -5.35448 0.77244 2.03325 2.09816 2.29234 2.72337 2.93766 3.02927 3.11310 3.18129 3.67661 4.00792 4.19621 4.41023 4.56812 4.59585 4.61418 4.66622 4.88923 5.04690 5.19418 5.26857 5.33447 5.35891 5.43094 5.44758 5.50836 5.58913 5.66048 5.75125 5.83610 5.93747 5.94019 5.97330 6.01953 6.13022 6.25695 6.29094 6.52955 6.74511 7.12363 7.29508 7.30976 7.75776 7.94650 8.85827 10.20365 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002621 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.995960 B =10680.753907 C =10936.784545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.729 3.271 10 O -0.999 6.999 11 O -1.000 7.000 12 N -1.027 6.027 13 C 0.155 3.845 14 C -0.138 4.138 15 H 0.088 0.912 16 C 0.139 3.861 17 N -0.618 5.618 18 C 0.618 3.382 19 O -0.524 6.524 20 C -0.072 4.072 21 C -0.122 4.122 22 C -0.226 4.226 23 C -0.009 4.009 24 O -0.159 6.159 25 C 0.121 3.879 26 C -0.134 4.134 27 H 0.100 0.900 28 C 0.145 3.855 29 H 0.291 0.709 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.210 0.790 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 -16.420 5.851 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.830 3.170 10 O -0.990 6.990 11 O -0.990 6.990 12 N -0.863 5.863 13 C 0.029 3.971 14 C -0.158 4.158 15 H 0.106 0.894 16 C 0.018 3.982 17 N -0.352 5.352 18 C 0.406 3.594 19 O -0.402 6.402 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.245 4.245 23 C -0.078 4.078 24 O -0.054 6.054 25 C -0.001 4.001 26 C -0.155 4.155 27 H 0.118 0.882 28 C 0.019 3.981 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.227 0.773 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.960 -16.473 5.310 21.038 hybrid contribution 1.138 1.053 0.201 1.563 sum 13.098 -15.420 5.511 20.969 Atomic orbital electron populations 1.69900 1.06781 1.30698 1.40203 1.24763 0.94472 1.00840 0.88497 0.86128 0.80419 0.80390 0.78587 1.18638 1.19593 1.19599 1.30637 1.06170 1.11749 1.66685 0.87951 1.00146 0.71547 0.72485 0.72781 1.93364 1.72360 1.87435 1.45803 1.93358 1.72400 1.87468 1.45822 1.60459 1.61692 1.54271 1.09925 1.20432 0.93821 0.94943 0.87877 1.22103 0.99906 0.95791 0.98023 0.89351 1.21004 1.00523 0.90176 0.86514 1.49818 1.58187 1.18228 1.08974 1.16146 0.77760 0.79674 0.85805 1.90892 1.55195 1.63362 1.30799 1.22005 1.09650 0.96945 0.83822 1.21970 0.99376 0.95632 0.97333 1.21863 1.07554 1.01537 0.93581 1.24485 0.98889 0.89678 0.94798 1.84190 1.63164 1.43542 1.14514 1.21913 0.96538 0.94152 0.87462 1.22979 0.97893 0.97226 0.97380 0.88220 1.21126 0.98740 0.89624 0.88576 0.89891 0.91445 0.90558 0.89953 0.90306 0.82283 0.82638 0.77316 0.89079 0.90008 0.89522 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.53 13.19 55.43 0.73 -23.80 16 2 C 0.13 3.62 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -1.02 -27.34 9.75 30.60 0.30 -27.05 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.73 70.38 5.26 -107.50 -0.56 69.81 16 10 O -1.00 -28.56 17.64 -57.17 -1.01 -29.57 16 11 O -1.00 -28.32 17.43 -57.17 -1.00 -29.32 16 12 N -1.03 -19.51 3.81 -112.43 -0.43 -19.94 16 13 C 0.16 2.39 6.94 -4.14 -0.03 2.36 16 14 C -0.14 -1.65 2.72 -90.92 -0.25 -1.90 16 15 H 0.09 1.01 7.97 -51.93 -0.41 0.59 16 16 C 0.14 1.56 6.83 -3.95 -0.03 1.53 16 17 N -0.62 -7.22 3.43 -172.67 -0.59 -7.81 16 18 C 0.62 8.03 7.85 -12.86 -0.10 7.93 16 19 O -0.52 -8.22 17.24 5.19 0.09 -8.13 16 20 C -0.07 -0.80 6.95 -36.79 -0.26 -1.06 16 21 C -0.12 -1.18 10.62 -39.39 -0.42 -1.59 16 22 C -0.23 -1.61 10.87 -39.89 -0.43 -2.04 16 23 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 24 O -0.16 -1.48 7.88 5.01 0.04 -1.44 16 25 C 0.12 1.23 6.00 -2.92 -0.02 1.21 16 26 C -0.13 -1.61 3.33 -89.16 -0.30 -1.90 16 27 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 28 C 0.15 2.17 6.89 -3.07 -0.02 2.15 16 29 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.21 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.09 0.85 6.22 -51.93 -0.32 0.53 16 38 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 39 H 0.09 1.33 7.86 -51.93 -0.41 0.92 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -36.86 352.37 -8.65 -45.50 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.92 Total: 0.73 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.29 Total: -16.54 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.29 Total: -51.56 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -1.88 Total: -68.46 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 70.38 SS G_CDS: -0.56 Total: 69.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.86 -8.65 -45.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.069 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds