Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99833 * 2 1 4 4 H 1.48507 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47270 * 300.00133 * 3 2 1 6 6 H 1.48506 * 109.47264 * 60.00199 * 3 2 1 7 7 C 1.37878 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99860 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00090 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40388 * 66.46690 * 9 7 2 11 11 O 1.42098 * 106.40389 * 293.54061 * 9 7 2 12 12 N 1.65605 * 107.21639 * 180.02562 * 9 7 2 13 13 C 1.49336 * 126.13488 * 269.97623 * 12 9 7 14 14 C 1.49609 * 104.60337 * 173.10876 * 13 12 9 15 15 H 1.08998 * 108.41654 * 281.97823 * 14 13 12 16 16 C 1.49749 * 128.49181 * 147.42763 * 14 13 12 17 17 N 1.49556 * 104.39867 * 211.89406 * 16 14 13 18 18 C 1.34777 * 126.21320 * 186.72142 * 17 16 14 19 19 O 1.21693 * 120.00555 * 0.02562 * 18 17 16 20 20 C 1.46663 * 119.99551 * 179.97438 * 18 17 16 21 21 C 1.36546 * 125.98233 * 179.71856 * 20 18 17 22 22 C 1.40366 * 106.70385 * 179.90934 * 21 20 18 23 23 C 1.35129 * 107.11390 * 0.34886 * 22 21 20 24 24 O 1.33928 * 108.77159 * 359.78264 * 23 22 21 25 25 C 1.49811 * 107.56761 * 6.74416 * 17 16 14 26 26 C 1.51567 * 102.08332 * 26.75923 * 25 17 16 27 27 H 1.09006 * 111.43622 * 71.28385 * 26 25 17 28 28 C 1.49690 * 126.13146 * 90.00140 * 12 9 7 29 29 H 0.96995 * 119.99910 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.40909 * 291.88720 * 13 12 9 31 31 H 1.08998 * 110.41150 * 54.20928 * 13 12 9 32 32 H 1.09002 * 110.44897 * 93.16293 * 16 14 13 33 33 H 1.09004 * 110.44895 * 330.62414 * 16 14 13 34 34 H 1.07992 * 126.65034 * 0.03638 * 21 20 18 35 35 H 1.07999 * 126.44450 * 180.15220 * 22 21 20 36 36 H 1.08005 * 125.61569 * 179.77868 * 23 22 21 37 37 H 1.09002 * 110.91369 * 144.95734 * 25 17 16 38 38 H 1.08999 * 110.90653 * 268.53378 * 25 17 16 39 39 H 1.08991 * 110.82518 * 35.83184 * 28 12 9 40 40 H 1.08994 * 110.99450 * 272.34664 * 28 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7951 -1.2501 11 8 0.4520 -2.7956 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 2.8462 -4.5820 -1.2066 14 6 3.9135 -5.4790 -0.6638 15 1 4.7807 -4.8689 -0.4114 16 6 4.3851 -6.7959 -1.1984 17 7 4.7937 -7.5659 0.0169 18 6 5.4048 -8.7671 0.0303 19 8 5.6740 -9.3246 -1.0174 20 6 5.7462 -9.4018 1.3076 21 6 6.3580 -10.6126 1.4636 22 6 6.4901 -10.8229 2.8451 23 6 5.9527 -9.7485 3.4640 24 8 5.5056 -8.8945 2.5343 25 6 4.4000 -6.7596 1.2165 26 6 3.2326 -5.9513 0.6864 27 1 2.3548 -6.5775 0.5257 28 6 2.8480 -4.5832 1.2085 29 1 -0.4850 0.8400 0.0004 30 1 2.0937 -5.1648 -1.7378 31 1 3.2787 -3.8298 -1.8663 32 1 5.2369 -6.6539 -1.8635 33 1 3.5755 -7.3076 -1.7190 34 1 6.6800 -11.2783 0.6766 35 1 6.9344 -11.6831 3.3235 36 1 5.8935 -9.6026 4.5325 37 1 4.0850 -7.4075 2.0345 38 1 5.2145 -6.1071 1.5311 39 1 2.1124 -4.6664 2.0084 40 1 3.7277 -4.0369 1.5485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -94.200971 kcal Electronic energy + Delta-G solvation = -27412.326725 eV Core-core repulsion = 23320.533193 eV Total energy + Delta-G solvation = -4091.793532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.62449 -41.69632 -39.78893 -37.41545 -36.61941 -36.14489 -35.16794 -34.03700 -32.29325 -31.52138 -30.50981 -28.25186 -27.63569 -26.58735 -23.75881 -22.68839 -21.76347 -21.39486 -20.91342 -20.69309 -19.20134 -18.81154 -18.17798 -17.94690 -17.40084 -17.28436 -16.97677 -16.49975 -16.15416 -15.92420 -15.65493 -15.32178 -14.72023 -14.63395 -14.23828 -14.12683 -13.99288 -13.87996 -13.70046 -13.50833 -13.35127 -13.25339 -13.02970 -12.81571 -12.62895 -12.50571 -12.40422 -12.31725 -12.28157 -11.82739 -11.52605 -11.26558 -11.17918 -11.01690 -10.96720 -10.02182 -9.84640 -9.56605 -8.74466 -7.48013 0.04147 0.23147 1.33523 1.34633 1.45281 1.46838 1.52266 1.99684 2.07880 2.20376 2.55807 2.67379 2.80043 3.47643 3.61432 3.81802 3.88032 3.98496 4.02081 4.14092 4.20127 4.23389 4.27945 4.40986 4.48920 4.59247 4.67285 4.69339 4.70303 4.78044 4.86764 4.93123 4.95635 5.07349 5.11570 5.15434 5.25319 5.37188 5.43949 5.65495 5.89669 5.92326 6.22961 6.78809 6.83598 8.20909 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002621 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.995960 B =10680.753907 C =10936.784545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.246 1.246 5 H -0.261 1.261 6 H -0.259 1.259 7 C -1.037 5.037 8 H 0.120 0.880 9 S 2.736 3.264 10 O -1.040 7.040 11 O -1.037 7.037 12 N -1.032 6.032 13 C 0.147 3.853 14 C -0.124 4.124 15 H 0.103 0.897 16 C 0.141 3.859 17 N -0.619 5.619 18 C 0.615 3.385 19 O -0.564 6.564 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.235 4.235 23 C 0.010 3.990 24 O -0.166 6.166 25 C 0.131 3.869 26 C -0.124 4.124 27 H 0.093 0.907 28 C 0.138 3.862 29 H 0.299 0.701 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.182 0.818 36 H 0.253 0.747 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.757 -16.634 7.576 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.169 1.169 5 H -0.186 1.186 6 H -0.184 1.184 7 C -1.171 5.171 8 H 0.138 0.862 9 S 2.839 3.161 10 O -1.030 7.030 11 O -1.027 7.027 12 N -0.872 5.872 13 C 0.022 3.978 14 C -0.144 4.144 15 H 0.121 0.879 16 C 0.019 3.981 17 N -0.352 5.352 18 C 0.405 3.595 19 O -0.445 6.445 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.253 4.253 23 C -0.060 4.060 24 O -0.061 6.061 25 C 0.010 3.990 26 C -0.144 4.144 27 H 0.111 0.889 28 C 0.014 3.986 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.175 0.825 35 H 0.199 0.801 36 H 0.269 0.731 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.578 -16.693 7.048 23.256 hybrid contribution 0.342 0.973 -0.261 1.064 sum 14.920 -15.720 6.787 22.710 Atomic orbital electron populations 1.69995 1.08800 1.32286 1.41656 1.26031 0.95360 1.05406 0.87580 0.85094 0.79569 0.75137 0.79306 1.16892 1.18572 1.18364 1.31001 1.07199 1.12497 1.66355 0.86177 0.99440 0.72078 0.73178 0.71365 1.93301 1.74300 1.88280 1.47156 1.93297 1.74203 1.88270 1.46954 1.59880 1.61175 1.53227 1.12870 1.20628 0.94791 0.95587 0.86788 1.21892 0.99186 0.95824 0.97502 0.87858 1.20990 1.00838 0.89513 0.86742 1.49825 1.57774 1.18101 1.09454 1.16397 0.77263 0.79575 0.86233 1.90856 1.56990 1.64326 1.32350 1.21670 1.12334 0.97844 0.83902 1.22236 0.98401 0.95103 0.98856 1.22201 1.07963 1.02841 0.92337 1.25411 0.96135 0.88427 0.95989 1.84161 1.63528 1.44206 1.14212 1.21950 0.96020 0.94016 0.87059 1.22813 0.98513 0.95871 0.97248 0.88885 1.21389 0.99130 0.91200 0.86909 0.89126 0.91666 0.90250 0.89087 0.90528 0.82484 0.80071 0.73085 0.87921 0.88115 0.90355 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.01 13.19 21.45 0.28 -52.72 16 2 C 0.07 3.77 5.46 84.65 0.46 4.24 16 3 Si 0.99 40.52 29.54 68.60 2.03 42.55 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -1.04 -55.75 9.75 67.73 0.66 -55.09 16 8 H 0.12 5.79 7.81 -2.91 -0.02 5.77 16 9 S 2.74 144.62 5.26 -56.49 -0.30 144.33 16 10 O -1.04 -61.65 17.64 -128.00 -2.26 -63.91 16 11 O -1.04 -60.61 17.43 -128.00 -2.23 -62.84 16 12 N -1.03 -39.18 3.81 -509.61 -1.94 -41.13 16 13 C 0.15 4.47 6.94 84.74 0.59 5.05 16 14 C -0.12 -2.77 2.72 -10.99 -0.03 -2.80 16 15 H 0.10 2.07 7.97 -2.39 -0.02 2.05 16 16 C 0.14 2.98 6.83 84.74 0.58 3.56 16 17 N -0.62 -13.58 3.43 -818.41 -2.81 -16.39 16 18 C 0.61 15.63 7.85 86.44 0.68 16.31 16 19 O -0.56 -17.87 17.24 -4.33 -0.07 -17.95 16 20 C -0.11 -2.21 6.95 24.08 0.17 -2.04 16 21 C -0.13 -2.24 10.62 22.39 0.24 -2.00 16 22 C -0.23 -2.63 10.87 22.07 0.24 -2.39 16 23 C 0.01 0.09 12.08 67.10 0.81 0.90 16 24 O -0.17 -2.63 7.88 -4.99 -0.04 -2.67 16 25 C 0.13 2.33 6.00 85.26 0.51 2.84 16 26 C -0.12 -2.77 3.33 -9.85 -0.03 -2.80 16 27 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 28 C 0.14 3.97 6.89 85.24 0.59 4.56 16 29 H 0.30 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.25 -0.09 8.06 -2.91 -0.02 -0.12 16 37 H 0.10 1.64 6.22 -2.39 -0.01 1.63 16 38 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 39 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -82.98 352.37 -0.82 -83.79 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.07 Total: 16.62 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 5.46 Total: -29.67 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.47 Total: -110.24 kcal Atomic # 8 Polarization: -142.77 SS G_CDS: -4.60 Total: -147.38 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 144.62 SS G_CDS: -0.30 Total: 144.33 kcal Total: -82.98 -0.82 -83.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.409 kcal (2) G-P(sol) polarization free energy of solvation -82.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds