Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48499 * 109.46935 * 239.99708 * 3 2 1 5 5 H 1.48504 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47245 * 119.99893 * 3 2 1 7 7 C 1.37875 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40075 * 66.45433 * 9 7 2 11 11 O 1.42100 * 106.40226 * 293.54342 * 9 7 2 12 12 N 1.65596 * 107.22127 * 179.97438 * 9 7 2 13 13 C 1.49187 * 129.44654 * 265.61309 * 12 9 7 14 14 C 1.56750 * 99.23712 * 179.86418 * 13 12 9 15 15 C 1.57869 * 105.97624 * 41.30338 * 14 13 12 16 16 C 1.49810 * 129.44041 * 85.63917 * 12 9 7 17 17 C 1.50698 * 117.55414 * 358.82247 * 16 12 9 18 18 O 1.21278 * 120.00430 * 139.45393 * 17 16 12 19 19 N 1.34781 * 119.99801 * 319.46066 * 17 16 12 20 20 C 1.46504 * 120.00027 * 174.93664 * 19 17 16 21 21 C 1.50696 * 109.47114 * 179.97438 * 20 19 17 22 22 C 1.34516 * 125.78909 * 89.99496 * 21 20 19 23 23 C 1.41386 * 106.84386 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.83519 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.79156 * 270.02822 * 21 20 19 26 26 C 1.54874 * 103.53388 * 224.04241 * 16 12 9 27 27 H 0.97001 * 120.00361 * 0.02562 * 1 2 3 28 28 H 1.09000 * 111.44752 * 297.37349 * 13 12 9 29 29 H 1.09004 * 111.43949 * 62.36227 * 13 12 9 30 30 H 1.09002 * 118.46857 * 181.30914 * 14 13 12 31 31 H 1.09004 * 114.84231 * 188.45306 * 15 14 13 32 32 H 1.08997 * 114.69349 * 54.24214 * 15 14 13 33 33 H 0.97003 * 119.99828 * 354.92651 * 19 17 16 34 34 H 1.09004 * 109.47249 * 59.99916 * 20 19 17 35 35 H 1.08994 * 109.46595 * 299.99687 * 20 19 17 36 36 H 1.08004 * 126.57837 * 0.06099 * 22 21 20 37 37 H 1.07994 * 126.58102 * 180.02562 * 23 22 21 38 38 H 1.08010 * 125.78528 * 180.26826 * 24 23 22 39 39 H 1.09000 * 114.45429 * 47.50721 * 26 16 12 40 40 H 1.09003 * 114.45881 * 180.95689 * 26 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 2.8273 -4.6910 -1.1481 14 6 3.7943 -5.6418 -0.3620 15 6 2.9965 -6.1125 0.9164 16 6 2.9591 -4.5742 1.1541 17 6 2.6568 -4.0519 2.5350 18 8 2.5394 -4.8237 3.4631 19 7 2.5166 -2.7269 2.7385 20 6 2.1138 -2.2266 4.0553 21 6 2.0312 -0.7224 4.0174 22 6 0.9399 -0.0022 3.7016 23 6 1.3078 1.3600 3.7919 24 6 2.6021 1.3906 4.1570 25 8 3.0349 0.1265 4.2926 26 6 4.4266 -4.6689 0.6680 27 1 -0.4851 0.8400 -0.0004 28 1 2.0614 -5.2540 -1.6816 29 1 3.3761 -4.0329 -1.8218 30 1 4.4114 -6.3391 -0.9286 31 1 3.5862 -6.6689 1.6450 32 1 2.0258 -6.5619 0.7075 33 1 2.6826 -2.1046 2.0132 34 1 2.8490 -2.5312 4.8002 35 1 1.1391 -2.6379 4.3175 36 1 -0.0312 -0.3901 3.4314 37 1 0.6717 2.2122 3.6039 38 1 3.1917 2.2809 4.3189 39 1 4.8159 -3.7513 0.2271 40 1 5.1091 -5.1320 1.3807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -30.521176 kcal Electronic energy + Delta-G solvation = -29739.180122 eV Core-core repulsion = 25650.147953 eV Total energy + Delta-G solvation = -4089.032169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13403 -40.93398 -38.38361 -35.41945 -34.50862 -34.07185 -33.23784 -32.51238 -31.24765 -30.18374 -27.98387 -26.32831 -25.48774 -25.01993 -22.57961 -21.32056 -20.30861 -20.14072 -19.69351 -18.93068 -17.99625 -16.92479 -16.53574 -16.04157 -15.46167 -15.38983 -15.03285 -14.70840 -14.56518 -14.39927 -14.00371 -13.81245 -13.63744 -13.51417 -12.75585 -12.43959 -12.34460 -12.17720 -12.14410 -11.91155 -11.55653 -11.46873 -11.37018 -11.30327 -11.21603 -11.05816 -10.72717 -10.51027 -10.40792 -10.31315 -10.01978 -9.54990 -9.42494 -9.31325 -9.06604 -8.52749 -8.35422 -8.09431 -6.82855 -5.49632 1.96029 2.02534 2.89327 2.99178 3.03614 3.05381 3.10308 3.33477 3.84895 3.93816 4.24745 4.40633 4.48062 4.57130 4.74803 4.92308 4.99679 5.23020 5.42284 5.47821 5.54097 5.65826 5.72717 5.74975 5.83920 5.86413 5.99835 6.00728 6.08201 6.11342 6.21066 6.22550 6.25013 6.43996 6.50341 6.74204 6.84280 6.96060 7.15587 7.18055 7.54472 7.78630 8.01071 8.61643 8.74654 10.09748 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.006837 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.338916 B = 4094.238999 C = 5380.397475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.149 3.851 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.256 1.256 7 C -1.029 5.029 8 H 0.101 0.899 9 S 2.720 3.280 10 O -0.998 6.998 11 O -0.983 6.983 12 N -1.014 6.014 13 C 0.137 3.863 14 C -0.131 4.131 15 C -0.113 4.113 16 C 0.123 3.877 17 C 0.552 3.448 18 O -0.545 6.545 19 N -0.702 5.702 20 C 0.215 3.785 21 C -0.038 4.038 22 C -0.153 4.153 23 C -0.215 4.215 24 C -0.043 4.043 25 O -0.176 6.176 26 C -0.140 4.140 27 H 0.292 0.708 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.197 0.803 39 H 0.079 0.921 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 -2.434 3.638 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.071 4.071 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.180 1.180 7 C -1.162 5.162 8 H 0.119 0.881 9 S 2.822 3.178 10 O -0.988 6.988 11 O -0.973 6.973 12 N -0.850 5.850 13 C 0.012 3.988 14 C -0.150 4.150 15 C -0.152 4.152 16 C 0.031 3.969 17 C 0.337 3.663 18 O -0.422 6.422 19 N -0.357 5.357 20 C 0.091 3.909 21 C -0.088 4.088 22 C -0.173 4.173 23 C -0.235 4.235 24 C -0.111 4.111 25 O -0.073 6.073 26 C -0.179 4.179 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.214 0.786 39 H 0.098 0.902 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.274 -2.988 4.388 9.005 hybrid contribution 0.710 2.024 -0.700 2.256 sum 7.983 -0.963 3.688 8.847 Atomic orbital electron populations 1.69861 1.06643 1.30894 1.38719 1.24550 0.94308 1.00169 0.88096 0.86411 0.80372 0.80262 0.80105 1.19107 1.19993 1.17986 1.30563 1.05948 1.11684 1.68006 0.88053 1.00532 0.71659 0.72481 0.73156 1.93367 1.72152 1.87346 1.45962 1.93420 1.71789 1.87121 1.44996 1.60625 1.60898 1.52592 1.10853 1.22442 0.95188 0.92618 0.88562 1.24778 0.97983 0.97710 0.94516 1.24353 1.01155 0.93092 0.96637 1.22561 0.94296 0.95036 0.85010 1.19367 0.76185 0.82183 0.88568 1.90638 1.51680 1.56801 1.43121 1.46269 1.67733 1.07415 1.14309 1.19419 1.02303 0.83409 0.85722 1.22156 0.86726 0.92218 1.07693 1.21730 1.00654 0.92468 1.02424 1.21823 0.96303 0.97945 1.07396 1.23882 0.95846 0.85366 1.05979 1.83953 1.38495 1.15766 1.69078 1.24168 0.94373 1.00664 0.98683 0.89742 0.90677 0.90299 0.86307 0.87580 0.90589 0.74589 0.90474 0.88224 0.82755 0.83857 0.78639 0.90208 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.55 13.19 55.43 0.73 -21.82 16 2 C 0.15 3.83 5.46 -17.82 -0.10 3.74 16 3 Si 0.90 19.47 29.54 -169.99 -5.02 14.45 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 7 C -1.03 -26.09 7.70 30.60 0.24 -25.85 16 8 H 0.10 2.37 7.78 -52.49 -0.41 1.96 16 9 S 2.72 69.42 4.55 -107.50 -0.49 68.94 16 10 O -1.00 -28.74 17.77 -57.17 -1.02 -29.75 16 11 O -0.98 -26.54 15.05 -57.17 -0.86 -27.40 16 12 N -1.01 -20.48 3.80 -99.10 -0.38 -20.86 16 13 C 0.14 2.18 7.42 -0.53 0.00 2.18 16 14 C -0.13 -1.63 6.45 -91.00 -0.59 -2.22 16 15 C -0.11 -1.64 7.43 -26.77 -0.20 -1.84 16 16 C 0.12 2.21 2.27 -134.91 -0.31 1.90 16 17 C 0.55 11.21 6.67 -10.98 -0.07 11.14 16 18 O -0.54 -11.63 16.69 5.56 0.09 -11.54 16 19 N -0.70 -14.41 3.65 -61.47 -0.22 -14.64 16 20 C 0.21 3.99 6.21 -5.19 -0.03 3.96 16 21 C -0.04 -0.72 6.69 -35.63 -0.24 -0.96 16 22 C -0.15 -2.96 10.81 -39.70 -0.43 -3.39 16 23 C -0.22 -3.66 10.91 -39.70 -0.43 -4.09 16 24 C -0.04 -0.66 12.09 29.42 0.36 -0.31 16 25 O -0.18 -3.12 10.65 5.72 0.06 -3.06 16 26 C -0.14 -1.92 7.32 -28.74 -0.21 -2.13 16 27 H 0.29 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.34 7.92 -51.93 -0.41 0.93 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 8.90 5.15 -40.82 -0.21 8.69 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 36 H 0.15 3.16 8.06 -52.48 -0.42 2.73 16 37 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.20 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.10 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -33.86 351.86 -8.62 -42.48 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -4.80 Total: 15.76 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.02 Total: -17.87 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.13 Total: -57.32 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -1.72 Total: -71.75 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 69.42 SS G_CDS: -0.49 Total: 68.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.86 -8.62 -42.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.961 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds