Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48499 * 109.46935 * 239.99708 * 3 2 1 5 5 H 1.48504 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47245 * 119.99893 * 3 2 1 7 7 C 1.37875 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00112 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40075 * 66.45433 * 9 7 2 11 11 O 1.42100 * 106.40226 * 293.54342 * 9 7 2 12 12 N 1.65596 * 107.22127 * 179.97438 * 9 7 2 13 13 C 1.49187 * 129.44654 * 265.61309 * 12 9 7 14 14 C 1.56750 * 99.23712 * 179.86418 * 13 12 9 15 15 C 1.57869 * 105.97624 * 41.30338 * 14 13 12 16 16 C 1.49810 * 129.44041 * 85.63917 * 12 9 7 17 17 C 1.50698 * 117.55414 * 358.82247 * 16 12 9 18 18 O 1.21278 * 120.00430 * 139.45393 * 17 16 12 19 19 N 1.34781 * 119.99801 * 319.46066 * 17 16 12 20 20 C 1.46504 * 120.00027 * 174.93664 * 19 17 16 21 21 C 1.50696 * 109.47114 * 179.97438 * 20 19 17 22 22 C 1.34516 * 125.78909 * 89.99496 * 21 20 19 23 23 C 1.41386 * 106.84386 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.83519 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.79156 * 270.02822 * 21 20 19 26 26 C 1.54874 * 103.53388 * 224.04241 * 16 12 9 27 27 H 0.97001 * 120.00361 * 0.02562 * 1 2 3 28 28 H 1.09000 * 111.44752 * 297.37349 * 13 12 9 29 29 H 1.09004 * 111.43949 * 62.36227 * 13 12 9 30 30 H 1.09002 * 118.46857 * 181.30914 * 14 13 12 31 31 H 1.09004 * 114.84231 * 188.45306 * 15 14 13 32 32 H 1.08997 * 114.69349 * 54.24214 * 15 14 13 33 33 H 0.97003 * 119.99828 * 354.92651 * 19 17 16 34 34 H 1.09004 * 109.47249 * 59.99916 * 20 19 17 35 35 H 1.08994 * 109.46595 * 299.99687 * 20 19 17 36 36 H 1.08004 * 126.57837 * 0.06099 * 22 21 20 37 37 H 1.07994 * 126.58102 * 180.02562 * 23 22 21 38 38 H 1.08010 * 125.78528 * 180.26826 * 24 23 22 39 39 H 1.09000 * 114.45429 * 47.50721 * 26 16 12 40 40 H 1.09003 * 114.45881 * 180.95689 * 26 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 2.8273 -4.6910 -1.1481 14 6 3.7943 -5.6418 -0.3620 15 6 2.9965 -6.1125 0.9164 16 6 2.9591 -4.5742 1.1541 17 6 2.6568 -4.0519 2.5350 18 8 2.5394 -4.8237 3.4631 19 7 2.5166 -2.7269 2.7385 20 6 2.1138 -2.2266 4.0553 21 6 2.0312 -0.7224 4.0174 22 6 0.9399 -0.0022 3.7016 23 6 1.3078 1.3600 3.7919 24 6 2.6021 1.3906 4.1570 25 8 3.0349 0.1265 4.2926 26 6 4.4266 -4.6689 0.6680 27 1 -0.4851 0.8400 -0.0004 28 1 2.0614 -5.2540 -1.6816 29 1 3.3761 -4.0329 -1.8218 30 1 4.4114 -6.3391 -0.9286 31 1 3.5862 -6.6689 1.6450 32 1 2.0258 -6.5619 0.7075 33 1 2.6826 -2.1046 2.0132 34 1 2.8490 -2.5312 4.8002 35 1 1.1391 -2.6379 4.3175 36 1 -0.0312 -0.3901 3.4314 37 1 0.6717 2.2122 3.6039 38 1 3.1917 2.2809 4.3189 39 1 4.8159 -3.7513 0.2271 40 1 5.1091 -5.1320 1.3807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192959063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -56.209351 kcal Electronic energy + Delta-G solvation = -29740.294044 eV Core-core repulsion = 25650.147953 eV Total energy + Delta-G solvation = -4090.146092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50149 -42.21480 -39.87961 -37.46402 -36.21588 -36.01067 -35.19009 -33.89802 -32.65824 -31.60547 -29.28801 -28.30783 -26.86911 -26.13702 -24.01392 -22.69096 -21.74758 -21.58545 -20.96782 -20.65870 -19.60511 -18.61544 -18.15125 -17.52454 -17.20961 -16.85172 -16.53056 -16.24743 -16.06358 -16.01563 -15.73578 -15.28078 -15.10569 -14.92514 -14.20642 -14.00332 -13.88070 -13.78297 -13.54278 -13.34805 -13.18277 -13.02343 -12.87393 -12.65911 -12.55041 -12.47925 -12.44593 -12.38016 -12.33733 -12.02724 -11.24568 -11.14217 -11.03976 -10.97063 -10.78180 -10.09753 -9.84679 -9.46630 -8.74354 -7.50365 0.12084 0.65105 1.29877 1.32057 1.38806 1.43428 1.65765 1.99564 2.17995 2.39539 2.61349 2.68876 3.27493 3.35431 3.49056 3.57789 3.63990 3.77762 3.86354 4.10733 4.12927 4.16324 4.36797 4.46874 4.50681 4.74100 4.80336 4.84934 4.89252 4.89959 4.97321 5.03130 5.11008 5.12984 5.15090 5.20395 5.28532 5.37681 5.54474 5.55832 5.86249 6.17014 6.43175 6.77820 7.05226 8.19645 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.006837 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.338916 B = 4094.238999 C = 5380.397475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.101 3.899 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.236 1.236 7 C -1.034 5.034 8 H 0.117 0.883 9 S 2.723 3.277 10 O -1.045 7.045 11 O -1.014 7.014 12 N -1.023 6.023 13 C 0.117 3.883 14 C -0.092 4.092 15 C -0.111 4.111 16 C 0.086 3.914 17 C 0.542 3.458 18 O -0.565 6.565 19 N -0.709 5.709 20 C 0.211 3.789 21 C -0.049 4.049 22 C -0.175 4.175 23 C -0.233 4.233 24 C -0.025 4.025 25 O -0.179 6.179 26 C -0.126 4.126 27 H 0.297 0.703 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.131 0.869 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.247 0.753 39 H 0.080 0.920 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -2.044 3.514 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.115 4.115 3 Si 0.776 3.224 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.159 1.159 7 C -1.168 5.168 8 H 0.135 0.865 9 S 2.827 3.173 10 O -1.035 7.035 11 O -1.004 7.004 12 N -0.863 5.863 13 C -0.007 4.007 14 C -0.111 4.111 15 C -0.150 4.150 16 C -0.005 4.005 17 C 0.328 3.672 18 O -0.444 6.444 19 N -0.362 5.362 20 C 0.088 3.912 21 C -0.098 4.098 22 C -0.195 4.195 23 C -0.252 4.252 24 C -0.092 4.092 25 O -0.075 6.075 26 C -0.164 4.164 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.188 0.812 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.263 0.737 39 H 0.099 0.901 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.829 -2.621 4.265 11.930 hybrid contribution -0.438 1.860 -0.632 2.013 sum 10.391 -0.761 3.632 11.034 Atomic orbital electron populations 1.69956 1.08416 1.32061 1.40026 1.25536 0.94946 1.03791 0.87218 0.85627 0.79578 0.76175 0.81023 1.18414 1.18858 1.15933 1.30725 1.06625 1.11731 1.67735 0.86507 0.99949 0.72205 0.73340 0.71787 1.93299 1.74244 1.88318 1.47656 1.93373 1.73544 1.87817 1.45708 1.60038 1.60575 1.52176 1.13519 1.22898 0.96217 0.93420 0.88175 1.24743 0.96362 0.96829 0.93117 1.24534 1.01638 0.90427 0.98450 1.23078 0.97368 0.97111 0.82938 1.19944 0.75646 0.81911 0.89707 1.90604 1.52699 1.57008 1.44102 1.46398 1.67599 1.07674 1.14542 1.19460 1.02180 0.83805 0.85775 1.22031 0.86988 0.92307 1.08514 1.21713 0.99953 0.94401 1.03469 1.22069 0.97558 0.97167 1.08446 1.24825 0.95674 0.85649 1.03062 1.83961 1.38014 1.16541 1.68998 1.24250 0.91679 1.01404 0.99109 0.89290 0.90749 0.89087 0.81156 0.85078 0.91787 0.75301 0.88420 0.89704 0.85427 0.82046 0.73714 0.90132 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.84 13.19 21.45 0.28 -48.56 16 2 C 0.10 5.24 5.46 84.65 0.46 5.70 16 3 Si 0.96 38.66 29.54 68.60 2.03 40.68 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.24 -8.71 7.11 99.48 0.71 -8.01 16 7 C -1.03 -53.00 7.70 67.73 0.52 -52.48 16 8 H 0.12 5.41 7.78 -2.91 -0.02 5.38 16 9 S 2.72 143.74 4.55 -56.49 -0.26 143.49 16 10 O -1.04 -62.74 17.77 -128.00 -2.27 -65.01 16 11 O -1.01 -57.78 15.05 -128.00 -1.93 -59.71 16 12 N -1.02 -41.33 3.80 -467.45 -1.78 -43.11 16 13 C 0.12 3.52 7.42 87.17 0.65 4.17 16 14 C -0.09 -1.91 6.45 -11.04 -0.07 -1.98 16 15 C -0.11 -2.94 7.43 30.57 0.23 -2.71 16 16 C 0.09 2.98 2.27 -0.24 0.00 2.98 16 17 C 0.54 22.10 6.67 87.66 0.58 22.69 16 18 O -0.56 -24.28 16.69 -3.02 -0.05 -24.33 16 19 N -0.71 -29.63 3.65 -466.79 -1.70 -31.33 16 20 C 0.21 8.09 6.21 85.63 0.53 8.63 16 21 C -0.05 -1.86 6.69 24.83 0.17 -1.69 16 22 C -0.18 -6.98 10.81 22.19 0.24 -6.74 16 23 C -0.23 -7.63 10.91 22.19 0.24 -7.39 16 24 C -0.02 -0.69 12.09 66.97 0.81 0.12 16 25 O -0.18 -6.01 10.65 -2.46 -0.03 -6.04 16 26 C -0.13 -2.99 7.32 29.29 0.21 -2.77 16 27 H 0.30 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.13 2.83 7.92 -2.38 -0.02 2.81 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 17.84 5.15 -92.71 -0.48 17.37 16 34 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.13 5.68 8.06 -2.91 -0.02 5.66 16 37 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.25 4.20 8.06 -2.91 -0.02 4.17 16 39 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 40 H 0.13 2.31 7.92 -2.39 -0.02 2.30 16 Total: -1.00 -78.20 351.86 -0.52 -78.73 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: 0.61 Total: 46.66 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.57 Total: -31.48 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -3.20 Total: -122.99 kcal Atomic # 8 Polarization: -150.81 SS G_CDS: -4.28 Total: -155.09 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 143.74 SS G_CDS: -0.26 Total: 143.49 kcal Total: -78.20 -0.52 -78.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.520 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds