Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99353 * 2 1 4 4 H 1.48506 * 109.46714 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47360 * 300.00115 * 3 2 1 6 6 H 1.48498 * 109.47358 * 60.00621 * 3 2 1 7 7 C 1.37869 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00237 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40085 * 70.96292 * 9 7 2 11 11 O 1.42101 * 106.40107 * 298.04403 * 9 7 2 12 12 N 1.65601 * 107.22042 * 184.50018 * 9 7 2 13 13 C 1.39708 * 119.99439 * 65.79990 * 12 9 7 14 14 C 1.39020 * 120.00078 * 244.52412 * 13 12 9 15 15 C 1.38207 * 120.21840 * 180.02562 * 14 13 12 16 16 C 1.38030 * 120.22838 * 359.72929 * 15 14 13 17 17 C 1.39570 * 120.00040 * 0.54678 * 16 15 14 18 18 C 1.47868 * 120.10752 * 179.72267 * 17 16 15 19 19 O 1.21550 * 120.00057 * 145.92652 * 18 17 16 20 20 N 1.34773 * 119.99860 * 325.92979 * 18 17 16 21 21 C 1.47172 * 120.94592 * 356.08277 * 20 18 17 22 22 C 1.53289 * 108.37698 * 230.52009 * 21 20 18 23 23 O 1.42963 * 109.26234 * 307.76942 * 22 21 20 24 24 C 1.42964 * 114.16559 * 62.55881 * 23 22 21 25 25 C 1.47152 * 120.98078 * 176.14813 * 20 18 17 26 26 C 1.38642 * 120.00525 * 64.55517 * 13 12 9 27 27 H 0.96999 * 120.00602 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00099 * 245.79732 * 12 9 7 29 29 H 1.07997 * 119.89246 * 0.04786 * 14 13 12 30 30 H 1.08001 * 119.88550 * 180.02562 * 15 14 13 31 31 H 1.07999 * 119.99702 * 180.28031 * 16 15 14 32 32 H 1.08995 * 109.64324 * 110.81727 * 21 20 18 33 33 H 1.09004 * 109.72285 * 350.26460 * 21 20 18 34 34 H 1.08995 * 109.51159 * 187.82453 * 22 21 20 35 35 H 1.09000 * 109.51804 * 67.72191 * 22 21 20 36 36 H 1.09005 * 109.50948 * 57.34542 * 24 23 22 37 37 H 1.09002 * 109.50876 * 177.43867 * 24 23 22 38 38 H 1.09004 * 109.68048 * 9.71462 * 25 20 18 39 39 H 1.08993 * 109.68442 * 249.15909 * 25 20 18 40 40 H 1.07995 * 120.11630 * 359.94621 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.5375 -2.8449 -1.2890 11 8 0.3685 -2.7473 1.2029 12 7 2.2444 -3.9329 0.1229 13 6 3.0061 -4.0643 1.2866 14 6 4.3836 -3.8830 1.2400 15 6 5.1416 -4.0124 2.3884 16 6 4.5353 -4.3170 3.5905 17 6 3.1537 -4.5066 3.6470 18 6 2.5026 -4.8390 4.9323 19 8 1.3856 -4.4245 5.1728 20 7 3.1477 -5.6015 5.8371 21 6 4.4643 -6.1851 5.5339 22 6 4.4156 -7.6824 5.8584 23 8 3.9334 -7.8604 7.1924 24 6 2.5999 -7.3887 7.4005 25 6 2.5558 -5.8760 7.1561 26 6 2.3884 -4.3760 2.4881 27 1 -0.4851 0.8400 0.0004 28 1 2.3719 -4.5521 -0.6128 29 1 4.8631 -3.6399 0.3033 30 1 6.2113 -3.8701 2.3461 31 1 5.1306 -4.4128 4.4864 32 1 5.2283 -5.7020 6.1429 33 1 4.6940 -6.0457 4.4774 34 1 5.4163 -8.1060 5.7736 35 1 3.7471 -8.1850 5.1595 36 1 1.9242 -7.8895 6.7070 37 1 2.2940 -7.6020 8.4247 38 1 1.5218 -5.5314 7.1733 39 1 3.1274 -5.3624 7.9291 40 1 1.3183 -4.5169 2.5267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -120.933975 kcal Electronic energy + Delta-G solvation = -27695.322419 eV Core-core repulsion = 23602.369657 eV Total energy + Delta-G solvation = -4092.952762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74961 -39.09879 -38.04116 -35.36264 -35.11444 -34.33141 -34.04272 -33.09677 -31.94767 -30.89323 -28.84650 -28.04547 -26.16658 -24.61257 -23.87884 -22.25005 -21.77318 -19.74395 -19.13996 -18.04658 -17.42101 -16.88789 -16.48984 -16.24427 -16.20018 -15.79193 -15.62278 -15.30479 -15.15485 -14.94218 -14.44583 -14.07147 -13.93028 -13.58493 -13.43962 -13.33822 -12.76572 -12.49543 -12.17527 -12.05391 -11.77255 -11.58668 -11.53793 -11.26663 -11.24378 -10.97168 -10.71573 -10.60502 -10.45175 -10.38074 -10.23460 -9.89417 -9.61900 -9.27697 -8.89396 -8.86688 -8.70343 -8.22760 -6.72785 -5.35432 1.00922 1.43229 2.19515 2.66368 2.85001 3.05091 3.13053 3.19670 3.48529 3.86314 4.03129 4.31639 4.42430 4.57531 4.62440 4.67321 4.73058 4.91828 4.93697 4.99101 5.10278 5.19500 5.28515 5.36238 5.40803 5.47382 5.58154 5.59842 5.62277 5.77934 5.99387 6.19562 6.30929 6.43494 6.45110 6.50964 6.74402 6.77372 7.01221 7.18790 7.29910 7.76235 7.92872 8.12101 8.86145 10.21752 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.003198 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.130248 B = 8752.480490 C = 8788.718736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.015 5.015 8 H 0.103 0.897 9 S 2.701 3.299 10 O -1.001 7.001 11 O -0.987 6.987 12 N -1.084 6.084 13 C 0.164 3.836 14 C -0.100 4.100 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.127 4.127 18 C 0.564 3.436 19 O -0.518 6.518 20 N -0.617 5.617 21 C 0.057 3.943 22 C 0.046 3.954 23 O -0.382 6.382 24 C 0.048 3.952 25 C 0.077 3.923 26 C -0.059 4.059 27 H 0.291 0.709 28 H 0.412 0.588 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 -13.423 10.681 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.149 5.149 8 H 0.122 0.878 9 S 2.802 3.198 10 O -0.992 6.992 11 O -0.977 6.977 12 N -0.831 5.831 13 C 0.068 3.932 14 C -0.121 4.121 15 C -0.138 4.138 16 C -0.129 4.129 17 C -0.130 4.130 18 C 0.354 3.646 19 O -0.393 6.393 20 N -0.353 5.353 21 C -0.066 4.066 22 C -0.032 4.032 23 O -0.300 6.300 24 C -0.029 4.029 25 C -0.045 4.045 26 C -0.081 4.081 27 H 0.102 0.898 28 H 0.246 0.754 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.759 -13.221 10.993 20.831 hybrid contribution 0.940 1.216 -0.549 1.632 sum 12.699 -12.005 10.445 20.358 Atomic orbital electron populations 1.69896 1.06767 1.30754 1.39778 1.24739 0.94488 1.00833 0.88445 0.86113 0.80435 0.80319 0.78614 1.18556 1.19550 1.19516 1.30442 1.06069 1.11289 1.67105 0.87831 1.01052 0.72272 0.73385 0.73109 1.93393 1.75643 1.87349 1.42768 1.93405 1.68807 1.87048 1.48422 1.54011 1.58350 1.49056 1.21733 1.17177 0.90426 0.98959 0.86658 1.21622 0.93321 0.97768 0.99400 1.20912 0.99975 1.00918 0.91995 1.21426 0.93132 0.99800 0.98563 1.19574 0.93897 1.06463 0.93094 1.18454 0.85032 0.77714 0.83433 1.90839 1.18466 1.52091 1.77863 1.47984 1.20360 1.51522 1.15441 1.23020 0.85025 0.94385 1.04155 1.23037 1.00823 0.94920 0.84413 1.87950 1.30337 1.82449 1.29280 1.23001 0.84219 0.93051 1.02656 1.22282 1.01625 0.96478 0.84136 1.21716 1.01488 0.94174 0.90681 0.89835 0.75358 0.84923 0.85153 0.84982 0.90302 0.86748 0.87545 0.92427 0.92459 0.87582 0.87797 0.90597 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.96 13.12 55.43 0.73 -24.23 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -1.02 -27.95 9.69 30.60 0.30 -27.65 16 8 H 0.10 2.60 7.81 -52.48 -0.41 2.19 16 9 S 2.70 71.48 5.02 -107.50 -0.54 70.94 16 10 O -1.00 -28.93 18.02 -57.17 -1.03 -29.96 16 11 O -0.99 -29.05 16.00 -57.17 -0.91 -29.97 16 12 N -1.08 -21.23 5.71 32.39 0.18 -21.05 16 13 C 0.16 2.96 5.97 -83.83 -0.50 2.46 16 14 C -0.10 -1.43 9.96 -39.30 -0.39 -1.82 16 15 C -0.12 -1.39 10.02 -39.67 -0.40 -1.78 16 16 C -0.11 -1.33 7.37 -39.16 -0.29 -1.62 16 17 C -0.13 -2.01 5.36 -104.99 -0.56 -2.58 16 18 C 0.56 9.17 7.42 -12.32 -0.09 9.08 16 19 O -0.52 -10.66 16.26 5.32 0.09 -10.57 16 20 N -0.62 -7.37 3.02 -173.37 -0.52 -7.89 16 21 C 0.06 0.48 4.93 -3.53 -0.02 0.46 16 22 C 0.05 0.35 6.98 37.31 0.26 0.61 16 23 O -0.38 -3.58 10.74 -35.23 -0.38 -3.96 16 24 C 0.05 0.41 6.98 37.31 0.26 0.67 16 25 C 0.08 0.79 6.65 -3.53 -0.02 0.77 16 26 C -0.06 -1.12 8.63 -38.96 -0.34 -1.45 16 27 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.41 6.59 8.95 -34.47 -0.31 6.28 16 29 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.13 1.18 5.77 -52.49 -0.30 0.88 16 32 H 0.08 0.55 7.98 -51.93 -0.41 0.13 16 33 H 0.11 0.90 4.49 -51.93 -0.23 0.67 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.20 7.06 -51.93 -0.37 0.84 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.15 3.19 7.06 -52.49 -0.37 2.82 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -38.76 348.45 -8.55 -47.31 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.50 Total: 7.65 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.89 Total: -19.22 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.39 Total: -53.17 kcal Atomic # 8 Polarization: -72.22 SS G_CDS: -2.24 Total: -74.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 71.48 SS G_CDS: -0.54 Total: 70.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.76 -8.55 -47.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.625 kcal (2) G-P(sol) polarization free energy of solvation -38.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds