Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99353 * 2 1 4 4 H 1.48506 * 109.46714 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47360 * 300.00115 * 3 2 1 6 6 H 1.48498 * 109.47358 * 60.00621 * 3 2 1 7 7 C 1.37869 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00237 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00030 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40085 * 70.96292 * 9 7 2 11 11 O 1.42101 * 106.40107 * 298.04403 * 9 7 2 12 12 N 1.65601 * 107.22042 * 184.50018 * 9 7 2 13 13 C 1.39708 * 119.99439 * 65.79990 * 12 9 7 14 14 C 1.39020 * 120.00078 * 244.52412 * 13 12 9 15 15 C 1.38207 * 120.21840 * 180.02562 * 14 13 12 16 16 C 1.38030 * 120.22838 * 359.72929 * 15 14 13 17 17 C 1.39570 * 120.00040 * 0.54678 * 16 15 14 18 18 C 1.47868 * 120.10752 * 179.72267 * 17 16 15 19 19 O 1.21550 * 120.00057 * 145.92652 * 18 17 16 20 20 N 1.34773 * 119.99860 * 325.92979 * 18 17 16 21 21 C 1.47172 * 120.94592 * 356.08277 * 20 18 17 22 22 C 1.53289 * 108.37698 * 230.52009 * 21 20 18 23 23 O 1.42963 * 109.26234 * 307.76942 * 22 21 20 24 24 C 1.42964 * 114.16559 * 62.55881 * 23 22 21 25 25 C 1.47152 * 120.98078 * 176.14813 * 20 18 17 26 26 C 1.38642 * 120.00525 * 64.55517 * 13 12 9 27 27 H 0.96999 * 120.00602 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00099 * 245.79732 * 12 9 7 29 29 H 1.07997 * 119.89246 * 0.04786 * 14 13 12 30 30 H 1.08001 * 119.88550 * 180.02562 * 15 14 13 31 31 H 1.07999 * 119.99702 * 180.28031 * 16 15 14 32 32 H 1.08995 * 109.64324 * 110.81727 * 21 20 18 33 33 H 1.09004 * 109.72285 * 350.26460 * 21 20 18 34 34 H 1.08995 * 109.51159 * 187.82453 * 22 21 20 35 35 H 1.09000 * 109.51804 * 67.72191 * 22 21 20 36 36 H 1.09005 * 109.50948 * 57.34542 * 24 23 22 37 37 H 1.09002 * 109.50876 * 177.43867 * 24 23 22 38 38 H 1.09004 * 109.68048 * 9.71462 * 25 20 18 39 39 H 1.08993 * 109.68442 * 249.15909 * 25 20 18 40 40 H 1.07995 * 120.11630 * 359.94621 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.5375 -2.8449 -1.2890 11 8 0.3685 -2.7473 1.2029 12 7 2.2444 -3.9329 0.1229 13 6 3.0061 -4.0643 1.2866 14 6 4.3836 -3.8830 1.2400 15 6 5.1416 -4.0124 2.3884 16 6 4.5353 -4.3170 3.5905 17 6 3.1537 -4.5066 3.6470 18 6 2.5026 -4.8390 4.9323 19 8 1.3856 -4.4245 5.1728 20 7 3.1477 -5.6015 5.8371 21 6 4.4643 -6.1851 5.5339 22 6 4.4156 -7.6824 5.8584 23 8 3.9334 -7.8604 7.1924 24 6 2.5999 -7.3887 7.4005 25 6 2.5558 -5.8760 7.1561 26 6 2.3884 -4.3760 2.4881 27 1 -0.4851 0.8400 0.0004 28 1 2.3719 -4.5521 -0.6128 29 1 4.8631 -3.6399 0.3033 30 1 6.2113 -3.8701 2.3461 31 1 5.1306 -4.4128 4.4864 32 1 5.2283 -5.7020 6.1429 33 1 4.6940 -6.0457 4.4774 34 1 5.4163 -8.1060 5.7736 35 1 3.7471 -8.1850 5.1595 36 1 1.9242 -7.8895 6.7070 37 1 2.2940 -7.6020 8.4247 38 1 1.5218 -5.5314 7.1733 39 1 3.1274 -5.3624 7.9291 40 1 1.3183 -4.5169 2.5267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -153.704515 kcal Electronic energy + Delta-G solvation = -27696.743456 eV Core-core repulsion = 23602.369657 eV Total energy + Delta-G solvation = -4094.373799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.80640 -40.12424 -39.14855 -37.50135 -36.34245 -36.23873 -35.57729 -35.16882 -32.79206 -31.95682 -30.10510 -28.94017 -28.31206 -25.45329 -24.86107 -23.43387 -22.72979 -21.18023 -20.75660 -19.59796 -18.96142 -18.37205 -17.90864 -17.34094 -17.28359 -17.01357 -16.73674 -16.61585 -16.35516 -15.96974 -15.90389 -15.63623 -15.38874 -15.05120 -14.59836 -14.39475 -14.04680 -13.77566 -13.62306 -13.36207 -13.05677 -13.00991 -12.93001 -12.62337 -12.61770 -12.56402 -12.37440 -12.28396 -12.23700 -11.80347 -11.34632 -11.29602 -11.21611 -10.97318 -10.84555 -10.03292 -9.68159 -9.51926 -8.78991 -7.53247 -0.19165 0.04062 0.46187 1.31907 1.32669 1.50889 1.59301 1.74549 2.18015 2.55034 2.68026 2.81481 2.86770 3.34420 3.60246 3.72519 3.89650 3.97344 4.03316 4.10493 4.18756 4.23936 4.25369 4.27848 4.44290 4.50349 4.58945 4.64633 4.73367 4.79766 4.86871 4.91325 5.06982 5.20121 5.24802 5.31639 5.36657 5.50535 5.81209 5.87740 6.08324 6.15004 6.31144 6.73712 6.95472 8.17885 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.003198 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.130248 B = 8752.480490 C = 8788.718736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.067 3.933 3 Si 0.993 3.007 4 H -0.239 1.239 5 H -0.257 1.257 6 H -0.264 1.264 7 C -1.031 5.031 8 H 0.126 0.874 9 S 2.705 3.295 10 O -1.039 7.039 11 O -1.032 7.032 12 N -1.067 6.067 13 C 0.128 3.872 14 C -0.094 4.094 15 C -0.097 4.097 16 C -0.086 4.086 17 C -0.140 4.140 18 C 0.556 3.444 19 O -0.582 6.582 20 N -0.608 5.608 21 C 0.050 3.950 22 C 0.043 3.957 23 O -0.389 6.389 24 C 0.055 3.945 25 C 0.071 3.929 26 C -0.094 4.094 27 H 0.299 0.701 28 H 0.426 0.574 29 H 0.158 0.842 30 H 0.187 0.813 31 H 0.176 0.824 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.100 -13.277 11.758 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.146 4.146 3 Si 0.811 3.189 4 H -0.161 1.161 5 H -0.181 1.181 6 H -0.188 1.188 7 C -1.165 5.165 8 H 0.144 0.856 9 S 2.808 3.192 10 O -1.029 7.029 11 O -1.021 7.021 12 N -0.820 5.820 13 C 0.033 3.967 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.105 4.105 17 C -0.143 4.143 18 C 0.346 3.654 19 O -0.462 6.462 20 N -0.341 5.341 21 C -0.071 4.071 22 C -0.034 4.034 23 O -0.308 6.308 24 C -0.023 4.023 25 C -0.051 4.051 26 C -0.117 4.117 27 H 0.109 0.891 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.204 0.796 31 H 0.193 0.807 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.417 -13.150 12.073 24.941 hybrid contribution -0.707 0.994 -0.785 1.450 sum 16.710 -12.156 11.289 23.546 Atomic orbital electron populations 1.70008 1.08964 1.32356 1.41313 1.26101 0.95402 1.05617 0.87444 0.85063 0.79897 0.74701 0.79273 1.16106 1.18129 1.18812 1.30784 1.07296 1.11685 1.66759 0.85561 1.00516 0.72847 0.74234 0.71631 1.93325 1.77407 1.88175 1.44026 1.93355 1.70998 1.87958 1.49818 1.53138 1.57804 1.47888 1.23205 1.17447 0.92046 1.01917 0.85259 1.21961 0.91294 0.96449 1.01812 1.21524 1.02267 0.97638 0.90113 1.21919 0.91179 0.96691 1.00704 1.19665 0.95672 1.07282 0.91727 1.18706 0.84515 0.77941 0.84229 1.90801 1.21200 1.55079 1.79159 1.48103 1.21342 1.49663 1.14999 1.23375 0.83428 0.95045 1.05258 1.23221 1.02361 0.94303 0.83486 1.87948 1.30244 1.82368 1.30217 1.23003 0.84116 0.91298 1.03862 1.22454 1.00757 0.98114 0.83741 1.21511 0.99788 0.97380 0.92989 0.89113 0.73573 0.82427 0.79575 0.80704 0.87343 0.85970 0.84212 0.93335 0.93508 0.85161 0.90086 0.88646 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.95 13.12 21.44 0.28 -54.67 16 2 C 0.07 3.80 5.46 84.65 0.46 4.26 16 3 Si 0.99 41.59 29.54 68.60 2.03 43.62 16 4 H -0.24 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -1.03 -57.38 9.69 67.73 0.66 -56.73 16 8 H 0.13 6.18 7.81 -2.91 -0.02 6.16 16 9 S 2.70 150.58 5.02 -56.49 -0.28 150.29 16 10 O -1.04 -63.24 18.02 -128.00 -2.31 -65.55 16 11 O -1.03 -65.53 16.00 -128.00 -2.05 -67.57 16 12 N -1.07 -43.37 5.71 -51.45 -0.29 -43.66 16 13 C 0.13 4.67 5.97 38.17 0.23 4.90 16 14 C -0.09 -2.39 9.96 22.45 0.22 -2.16 16 15 C -0.10 -1.71 10.02 22.21 0.22 -1.49 16 16 C -0.09 -1.73 7.37 22.54 0.17 -1.56 16 17 C -0.14 -4.43 5.36 -20.10 -0.11 -4.54 16 18 C 0.56 18.72 7.42 86.79 0.64 19.36 16 19 O -0.58 -26.16 16.26 -3.87 -0.06 -26.22 16 20 N -0.61 -13.89 3.02 -820.70 -2.48 -16.37 16 21 C 0.05 0.65 4.93 86.35 0.43 1.07 16 22 C 0.04 0.51 6.98 72.08 0.50 1.02 16 23 O -0.39 -6.19 10.74 -148.98 -1.60 -7.79 16 24 C 0.05 0.86 6.98 72.08 0.50 1.36 16 25 C 0.07 1.43 6.65 86.35 0.57 2.00 16 26 C -0.09 -3.80 8.63 22.67 0.20 -3.60 16 27 H 0.30 16.45 8.31 -92.71 -0.77 15.68 16 28 H 0.43 14.13 8.95 -96.75 -0.87 13.26 16 29 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.18 2.01 5.77 -2.91 -0.02 1.99 16 32 H 0.11 0.88 7.98 -2.39 -0.02 0.86 16 33 H 0.12 1.38 4.49 -2.38 -0.01 1.37 16 34 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 2.01 7.06 -2.39 -0.02 2.00 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 4.90 7.06 -2.91 -0.02 4.88 16 Total: -1.00 -93.97 348.45 -1.83 -95.80 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.23 Total: 28.22 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 4.70 Total: -36.12 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -2.49 Total: -114.70 kcal Atomic # 8 Polarization: -161.10 SS G_CDS: -6.02 Total: -167.12 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 150.58 SS G_CDS: -0.28 Total: 150.29 kcal Total: -93.97 -1.83 -95.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.900 kcal (2) G-P(sol) polarization free energy of solvation -93.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds