Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48502 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47122 * 299.99837 * 3 2 1 6 6 H 1.48498 * 109.47188 * 59.99979 * 3 2 1 7 7 C 1.37879 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00007 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99725 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40391 * 66.46275 * 9 7 2 11 11 O 1.42100 * 106.40447 * 293.53888 * 9 7 2 12 12 N 1.65603 * 107.21455 * 180.02562 * 9 7 2 13 13 C 1.46969 * 120.59348 * 90.00295 * 12 9 7 14 14 C 1.53372 * 108.63471 * 235.20519 * 13 12 9 15 15 N 1.46971 * 108.63349 * 310.57263 * 14 13 12 16 16 C 1.34773 * 120.59663 * 235.20381 * 15 14 13 17 17 O 1.21582 * 119.99963 * 174.38919 * 16 15 14 18 18 C 1.47608 * 119.99913 * 354.39356 * 16 15 14 19 19 C 1.39737 * 120.08473 * 320.99519 * 18 16 15 20 20 C 1.37699 * 119.90723 * 179.79180 * 19 18 16 21 21 C 1.38998 * 120.08848 * 0.48372 * 20 19 18 22 22 O 1.35708 * 119.91091 * 179.76957 * 21 20 19 23 23 C 1.38995 * 120.17611 * 359.74507 * 21 20 19 24 24 C 1.37696 * 120.08993 * 0.02562 * 23 21 20 25 25 C 1.46969 * 118.81038 * 55.22913 * 15 14 13 26 26 C 1.46962 * 120.59417 * 269.97714 * 12 9 7 27 27 H 0.97003 * 119.99902 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.60964 * 354.94501 * 13 12 9 29 29 H 1.08991 * 109.61332 * 115.45737 * 13 12 9 30 30 H 1.08997 * 109.61347 * 70.31562 * 14 13 12 31 31 H 1.08993 * 109.61112 * 190.83249 * 14 13 12 32 32 H 1.07997 * 120.04276 * 0.02562 * 19 18 16 33 33 H 1.07997 * 119.95667 * 180.23468 * 20 19 18 34 34 H 0.96699 * 114.00433 * 269.97548 * 22 21 20 35 35 H 1.08006 * 119.95575 * 180.02562 * 23 21 20 36 36 H 1.07995 * 120.05024 * 180.02562 * 24 23 21 37 37 H 1.08995 * 109.61151 * 185.03197 * 25 15 14 38 38 H 1.09003 * 109.61154 * 64.51413 * 25 15 14 39 39 H 1.09000 * 109.61152 * 244.53873 * 26 12 9 40 40 H 1.09001 * 109.61441 * 5.05377 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.7563 -4.4844 1.2646 14 6 4.2865 -4.3808 1.2644 15 7 4.7942 -4.9301 -0.0007 16 6 5.7097 -5.9193 -0.0007 17 8 6.0467 -6.4356 -1.0485 18 6 6.3030 -6.3758 1.2715 19 6 6.6215 -5.4495 2.2681 20 6 7.1708 -5.8798 3.4551 21 6 7.4179 -7.2324 3.6588 22 8 7.9638 -7.6520 4.8282 23 6 7.1069 -8.1564 2.6681 24 6 6.5530 -7.7346 1.4801 25 6 4.2862 -4.3811 -1.2658 26 6 2.7559 -4.4847 -1.2656 27 1 -0.4850 0.8401 0.0004 28 1 2.3511 -3.9134 2.1000 29 1 2.4604 -5.5295 1.3549 30 1 4.5824 -3.3356 1.3543 31 1 4.6919 -4.9515 2.0998 32 1 6.4335 -4.3980 2.1089 33 1 7.4138 -5.1650 4.2274 34 1 8.9304 -7.6780 4.8242 35 1 7.3001 -9.2066 2.8302 36 1 6.3112 -8.4531 0.7109 37 1 4.6913 -4.9520 -2.1012 38 1 4.5821 -3.3359 -1.3560 39 1 2.4601 -5.5299 -1.3555 40 1 2.3506 -3.9140 -2.1011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -150.227801 kcal Electronic energy + Delta-G solvation = -27759.925212 eV Core-core repulsion = 23665.702174 eV Total energy + Delta-G solvation = -4094.223038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69034 -40.18849 -38.57832 -37.51750 -37.44897 -36.15406 -35.26223 -34.86635 -32.73129 -31.98560 -30.92222 -28.24700 -28.09218 -25.19175 -24.57920 -23.64905 -22.73244 -21.18018 -20.30223 -19.40710 -19.37184 -18.54367 -17.84608 -17.46064 -16.96950 -16.79280 -16.67477 -16.48159 -16.04228 -15.92953 -15.65824 -15.32705 -15.28112 -14.94433 -14.49148 -14.34792 -13.97299 -13.67479 -13.48296 -13.43787 -13.12948 -13.05265 -13.02292 -12.94551 -12.68288 -12.51197 -12.43281 -12.27079 -12.16040 -11.82317 -11.42424 -11.25705 -11.08999 -10.99438 -10.40224 -10.02456 -9.71408 -9.40454 -8.73287 -7.46954 -0.20140 0.24689 0.31842 1.34618 1.36359 1.53143 1.59355 1.87196 2.21397 2.59528 2.62492 2.77315 3.23090 3.40290 3.77350 3.79006 3.85197 3.89232 3.95876 4.08641 4.19173 4.29825 4.31819 4.41818 4.45721 4.51248 4.56874 4.68572 4.73693 4.84906 4.92502 4.98788 5.10762 5.15517 5.26614 5.30762 5.35875 5.42363 5.72120 5.85137 5.92762 6.29755 6.80076 6.85152 6.99998 8.22007 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003243 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.446310 B = 8631.741729 C = 9137.175558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.989 3.011 4 H -0.244 1.244 5 H -0.264 1.264 6 H -0.260 1.260 7 C -1.031 5.031 8 H 0.123 0.877 9 S 2.715 3.285 10 O -1.041 7.041 11 O -1.037 7.037 12 N -1.008 6.008 13 C 0.102 3.898 14 C 0.085 3.915 15 N -0.597 5.597 16 C 0.561 3.439 17 O -0.577 6.577 18 C -0.157 4.157 19 C -0.072 4.072 20 C -0.150 4.150 21 C 0.133 3.867 22 O -0.506 6.506 23 C -0.153 4.153 24 C -0.056 4.056 25 C 0.101 3.899 26 C 0.110 3.890 27 H 0.298 0.702 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.416 0.584 35 H 0.152 0.848 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.810 -10.852 7.604 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.807 3.193 4 H -0.167 1.167 5 H -0.188 1.188 6 H -0.185 1.185 7 C -1.165 5.165 8 H 0.141 0.859 9 S 2.818 3.182 10 O -1.031 7.031 11 O -1.027 7.027 12 N -0.846 5.846 13 C -0.024 4.024 14 C -0.039 4.039 15 N -0.329 5.329 16 C 0.351 3.649 17 O -0.458 6.458 18 C -0.160 4.160 19 C -0.090 4.090 20 C -0.168 4.168 21 C 0.088 3.912 22 O -0.321 6.321 23 C -0.171 4.171 24 C -0.075 4.075 25 C -0.022 4.022 26 C -0.016 4.016 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.277 0.723 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.264 -11.259 7.234 21.844 hybrid contribution 0.621 1.108 -0.419 1.337 sum 17.885 -10.151 6.815 21.665 Atomic orbital electron populations 1.70002 1.08855 1.32240 1.41639 1.25992 0.95272 1.05305 0.87570 0.85113 0.79700 0.75258 0.79181 1.16683 1.18848 1.18471 1.30930 1.07161 1.12069 1.66347 0.85901 1.00168 0.72739 0.73776 0.71496 1.93297 1.74455 1.88301 1.47075 1.93298 1.74349 1.88281 1.46778 1.57724 1.61485 1.53715 1.11647 1.21897 0.94433 1.00385 0.85644 1.22745 0.93344 1.01377 0.86405 1.47945 1.40666 1.36188 1.08083 1.18668 0.78630 0.78360 0.89208 1.90748 1.63362 1.57172 1.34468 1.19840 1.06040 0.95607 0.94527 1.21487 0.95565 1.00227 0.91756 1.21609 1.01519 0.95716 0.98004 1.18811 0.95855 0.91418 0.85111 1.84712 1.27799 1.88361 1.31203 1.21551 1.01776 1.01440 0.92376 1.21125 0.95123 0.94030 0.97216 1.22026 0.93020 1.00281 0.86919 1.21752 0.94050 1.00073 0.85756 0.89188 0.88326 0.90449 0.88955 0.85415 0.83227 0.82548 0.72293 0.83013 0.85036 0.87672 0.89749 0.90735 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 13.19 21.45 0.28 -51.91 16 2 C 0.07 3.82 5.46 84.65 0.46 4.28 16 3 Si 0.99 39.55 29.54 68.60 2.03 41.58 16 4 H -0.24 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -1.03 -53.66 9.75 67.73 0.66 -53.00 16 8 H 0.12 5.65 7.81 -2.91 -0.02 5.63 16 9 S 2.72 140.89 4.98 -56.49 -0.28 140.61 16 10 O -1.04 -60.77 16.71 -128.00 -2.14 -62.91 16 11 O -1.04 -59.46 16.71 -128.00 -2.14 -61.60 16 12 N -1.01 -38.58 3.26 -512.22 -1.67 -40.25 16 13 C 0.10 3.14 6.55 86.41 0.57 3.70 16 14 C 0.08 2.01 5.04 86.41 0.44 2.44 16 15 N -0.60 -15.83 2.95 -821.67 -2.42 -18.25 16 16 C 0.56 15.30 7.33 86.72 0.64 15.94 16 17 O -0.58 -19.41 16.31 -3.97 -0.06 -19.48 16 18 C -0.16 -3.35 5.19 -20.08 -0.10 -3.45 16 19 C -0.07 -1.18 7.34 22.50 0.17 -1.02 16 20 C -0.15 -2.05 9.97 22.32 0.22 -1.82 16 21 C 0.13 1.87 6.71 22.63 0.15 2.02 16 22 O -0.51 -5.63 13.49 -90.28 -1.22 -6.85 16 23 C -0.15 -2.29 9.97 22.32 0.22 -2.06 16 24 C -0.06 -1.07 9.62 22.50 0.22 -0.85 16 25 C 0.10 2.89 6.60 86.42 0.57 3.46 16 26 C 0.11 3.66 6.55 86.42 0.57 4.22 16 27 H 0.30 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.10 3.17 7.09 -2.38 -0.02 3.16 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 31 H 0.13 2.33 4.55 -2.39 -0.01 2.32 16 32 H 0.15 2.12 6.44 -2.91 -0.02 2.10 16 33 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.42 0.46 9.06 -74.06 -0.67 -0.21 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.13 2.54 8.05 -2.91 -0.02 2.52 16 37 H 0.11 2.91 6.99 -2.39 -0.02 2.89 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.09 3.31 7.09 -2.39 -0.02 3.30 16 Total: -1.00 -81.26 348.58 -2.43 -83.69 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.43 Total: 21.51 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.77 Total: -26.15 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.81 Total: -110.41 kcal Atomic # 8 Polarization: -145.28 SS G_CDS: -5.56 Total: -150.84 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 140.89 SS G_CDS: -0.28 Total: 140.61 kcal Total: -81.26 -2.43 -83.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.536 kcal (2) G-P(sol) polarization free energy of solvation -81.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds