Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99704 * 2 1 4 4 H 1.48502 * 109.47010 * 269.99885 * 3 2 1 5 5 H 1.48494 * 109.47621 * 30.00340 * 3 2 1 6 6 H 1.48504 * 109.46979 * 150.00297 * 3 2 1 7 7 C 1.37870 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47460 * 179.97438 * 10 9 7 12 12 S 1.81390 * 109.47286 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54669 * 68.37628 * 12 11 10 14 14 O 1.42101 * 110.54444 * 291.62385 * 12 11 10 15 15 N 1.65603 * 104.44895 * 180.02562 * 12 11 10 16 16 C 1.46635 * 126.56482 * 90.02358 * 15 12 11 17 17 C 1.50777 * 107.70113 * 179.97438 * 16 15 12 18 18 C 1.38449 * 131.20141 * 180.02562 * 17 16 15 19 19 C 1.38143 * 120.10356 * 180.27933 * 18 17 16 20 20 C 1.38261 * 119.95981 * 359.35535 * 19 18 17 21 21 N 1.48015 * 120.02042 * 180.33629 * 20 19 18 22 22 O 1.21803 * 120.00167 * 180.36329 * 21 20 19 23 23 O 1.21803 * 119.99910 * 0.36323 * 21 20 19 24 24 C 1.38149 * 119.95855 * 0.69746 * 20 19 18 25 25 C 1.38065 * 108.86269 * 359.97438 * 17 16 15 26 26 C 1.46637 * 126.56154 * 269.98073 * 15 12 11 27 27 H 0.97000 * 119.99958 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47469 * 59.99781 * 9 7 2 29 29 H 1.09003 * 109.47134 * 299.99532 * 9 7 2 30 30 H 1.09002 * 109.47667 * 59.99957 * 10 9 7 31 31 H 1.09003 * 109.47446 * 299.99505 * 10 9 7 32 32 H 1.09002 * 109.46618 * 59.99434 * 11 10 9 33 33 H 1.09003 * 109.46484 * 300.00214 * 11 10 9 34 34 H 1.08996 * 109.81152 * 60.42043 * 16 15 12 35 35 H 1.08995 * 109.80938 * 299.51242 * 16 15 12 36 36 H 1.08002 * 119.94450 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.02311 * 179.70456 * 19 18 17 38 38 H 1.08002 * 119.94333 * 179.64014 * 24 20 19 39 39 H 1.08993 * 109.81399 * 299.58626 * 26 15 12 40 40 H 1.09005 * 109.81151 * 60.49104 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6591 -6.3658 0.0004 13 8 3.3568 -6.4261 1.2369 14 8 3.3549 -6.4262 -1.2371 15 7 1.7087 -7.7220 0.0005 16 6 1.2074 -8.4374 -1.1772 17 6 0.3891 -9.6062 -0.6897 18 6 -0.2989 -10.5892 -1.3805 19 6 -0.9900 -11.5663 -0.6906 20 6 -0.9839 -11.5705 0.6920 21 7 -1.7178 -12.6211 1.4326 22 8 -1.7176 -12.6207 2.6506 23 8 -2.3219 -13.4861 0.8239 24 6 -0.2985 -10.5893 1.3819 25 6 0.3900 -9.6067 0.6910 26 6 1.2082 -8.4378 1.1783 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8533 -5.0450 -0.8886 33 1 0.8539 -5.0445 0.8914 34 1 2.0447 -8.7965 -1.7755 35 1 0.5830 -7.7732 -1.7748 36 1 -0.2992 -10.5892 -2.4605 37 1 -1.5302 -12.3296 -1.2308 38 1 -0.2987 -10.5895 2.4619 39 1 2.0459 -8.7970 1.7759 40 1 0.5843 -7.7738 1.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252155436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -45.560768 kcal Electronic energy + Delta-G solvation = -26144.606916 eV Core-core repulsion = 22054.922582 eV Total energy + Delta-G solvation = -4089.684334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.57709 -40.99824 -37.26636 -37.19197 -36.91775 -36.02156 -34.80474 -32.66845 -32.28830 -31.78492 -28.92005 -27.94997 -26.94755 -24.78201 -23.77464 -22.49508 -22.16111 -20.72401 -19.57709 -19.22045 -18.91754 -17.89628 -17.87381 -16.99068 -16.88709 -16.26460 -15.89269 -15.66177 -15.45066 -14.99930 -14.71209 -14.54888 -14.27963 -13.60947 -13.54706 -13.38788 -12.72662 -12.63139 -12.40463 -12.28182 -12.18583 -12.07585 -11.98431 -11.94951 -11.86228 -11.56558 -11.49072 -11.40536 -10.99671 -10.96575 -10.58618 -10.29780 -10.06988 -9.92763 -9.54840 -9.29108 -9.05856 -8.48373 -6.13227 -4.16834 -0.64441 0.07373 0.31560 0.86215 0.96127 2.36838 2.62380 3.25247 3.29482 3.31825 3.35402 3.58074 3.73877 3.92039 4.06515 4.23816 4.27628 4.36007 4.45261 4.79359 4.87211 4.90881 4.94631 4.99431 5.01769 5.09437 5.11428 5.17212 5.23358 5.44878 5.48510 5.64517 5.72463 5.84063 6.00483 6.13480 6.29816 6.74212 7.25290 7.46912 7.55786 7.84094 8.23673 8.89289 9.48469 10.97898 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002107 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.116960 B =13288.587733 C =13780.522949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.604 4.604 12 S 2.618 3.382 13 O -0.947 6.947 14 O -0.948 6.948 15 N -1.017 6.017 16 C 0.157 3.843 17 C -0.045 4.045 18 C -0.095 4.095 19 C -0.050 4.050 20 C -0.044 4.044 21 N 0.030 4.970 22 O -0.157 6.157 23 O -0.159 6.159 24 C -0.033 4.033 25 C -0.098 4.098 26 C 0.165 3.835 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.097 0.903 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -23.753 -1.991 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.737 4.737 12 S 2.716 3.284 13 O -0.938 6.938 14 O -0.939 6.939 15 N -0.852 5.852 16 C 0.031 3.969 17 C -0.047 4.047 18 C -0.114 4.114 19 C -0.069 4.069 20 C -0.127 4.127 21 N 0.550 4.450 22 O -0.374 6.374 23 O -0.375 6.375 24 C -0.052 4.052 25 C -0.100 4.100 26 C 0.040 3.960 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.115 0.885 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.800 -23.080 -2.341 23.213 hybrid contribution -0.638 0.819 0.202 1.057 sum -1.437 -22.262 -2.139 22.410 Atomic orbital electron populations 1.69952 1.06107 1.26887 1.50425 1.25023 0.94902 0.99432 0.95009 0.86542 0.79877 0.83095 0.78228 1.20534 1.21130 1.19717 1.21231 0.93262 0.90815 1.51303 0.92320 1.19064 0.93483 0.90392 0.97786 1.21544 0.99483 0.91445 1.02146 1.30575 1.16246 1.15364 1.11490 1.05181 0.75052 0.73857 0.74304 1.93588 1.69484 1.85466 1.45274 1.93584 1.69584 1.85501 1.45233 1.58811 1.70635 1.43947 1.11810 1.20130 0.97526 0.90954 0.88243 1.20933 0.94256 0.95018 0.94465 1.20537 0.96725 0.92866 1.01300 1.20984 0.96406 0.98543 0.90960 1.20887 1.05087 0.94188 0.92530 1.43537 0.99200 1.01000 1.01270 1.94566 1.66660 1.80776 0.95367 1.94549 1.42267 1.30613 1.70072 1.20230 0.92469 0.90329 1.02185 1.20305 0.98779 0.96741 0.94216 1.19995 0.97358 0.90668 0.87995 0.92825 0.96106 0.96066 0.91400 0.91413 0.85239 0.85196 0.88175 0.88633 0.82895 0.82357 0.82425 0.88503 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.75 4.97 -27.89 -0.14 0.61 16 10 C -0.11 -1.99 5.16 -26.73 -0.14 -2.13 16 11 C -0.60 -8.15 6.18 37.16 0.23 -7.92 16 12 S 2.62 33.35 5.68 -107.50 -0.61 32.74 16 13 O -0.95 -14.71 17.65 -57.54 -1.02 -15.73 16 14 O -0.95 -14.52 17.65 -57.54 -1.02 -15.53 16 15 N -1.02 -9.44 3.64 -116.66 -0.42 -9.86 16 16 C 0.16 1.12 6.94 -5.08 -0.04 1.08 16 17 C -0.05 -0.29 6.22 -104.57 -0.65 -0.94 16 18 C -0.10 -0.47 10.05 -39.54 -0.40 -0.87 16 19 C -0.05 -0.30 9.55 -39.61 -0.38 -0.68 16 20 C -0.04 -0.36 6.85 -79.97 -0.55 -0.91 16 21 N 0.03 0.32 4.45 33.95 0.15 0.47 16 22 O -0.16 -1.80 18.45 -29.46 -0.54 -2.34 16 23 O -0.16 -1.76 18.45 -29.46 -0.54 -2.30 16 24 C -0.03 -0.24 9.56 -39.54 -0.38 -0.62 16 25 C -0.10 -0.71 6.22 -104.57 -0.65 -1.36 16 26 C 0.17 1.28 6.94 -5.08 -0.04 1.25 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.13 1.52 8.14 -51.92 -0.42 1.09 16 33 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 37 H 0.16 0.71 7.61 -52.49 -0.40 0.31 16 38 H 0.16 0.96 7.61 -52.49 -0.40 0.56 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -35.21 364.07 -11.32 -46.53 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.99 Total: -4.64 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -3.53 Total: -25.66 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.46 Total: -34.60 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -3.12 Total: -35.91 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 33.35 SS G_CDS: -0.61 Total: 32.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.21 -11.32 -46.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252155436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.973 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds