Wall clock time and date at job start Sat Apr 11 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99704 * 2 1 4 4 H 1.48502 * 109.47010 * 269.99885 * 3 2 1 5 5 H 1.48494 * 109.47621 * 30.00340 * 3 2 1 6 6 H 1.48504 * 109.46979 * 150.00297 * 3 2 1 7 7 C 1.37870 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47460 * 179.97438 * 10 9 7 12 12 S 1.81390 * 109.47286 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54669 * 68.37628 * 12 11 10 14 14 O 1.42101 * 110.54444 * 291.62385 * 12 11 10 15 15 N 1.65603 * 104.44895 * 180.02562 * 12 11 10 16 16 C 1.46635 * 126.56482 * 90.02358 * 15 12 11 17 17 C 1.50777 * 107.70113 * 179.97438 * 16 15 12 18 18 C 1.38449 * 131.20141 * 180.02562 * 17 16 15 19 19 C 1.38143 * 120.10356 * 180.27933 * 18 17 16 20 20 C 1.38261 * 119.95981 * 359.35535 * 19 18 17 21 21 N 1.48015 * 120.02042 * 180.33629 * 20 19 18 22 22 O 1.21803 * 120.00167 * 180.36329 * 21 20 19 23 23 O 1.21803 * 119.99910 * 0.36323 * 21 20 19 24 24 C 1.38149 * 119.95855 * 0.69746 * 20 19 18 25 25 C 1.38065 * 108.86269 * 359.97438 * 17 16 15 26 26 C 1.46637 * 126.56154 * 269.98073 * 15 12 11 27 27 H 0.97000 * 119.99958 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47469 * 59.99781 * 9 7 2 29 29 H 1.09003 * 109.47134 * 299.99532 * 9 7 2 30 30 H 1.09002 * 109.47667 * 59.99957 * 10 9 7 31 31 H 1.09003 * 109.47446 * 299.99505 * 10 9 7 32 32 H 1.09002 * 109.46618 * 59.99434 * 11 10 9 33 33 H 1.09003 * 109.46484 * 300.00214 * 11 10 9 34 34 H 1.08996 * 109.81152 * 60.42043 * 16 15 12 35 35 H 1.08995 * 109.80938 * 299.51242 * 16 15 12 36 36 H 1.08002 * 119.94450 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.02311 * 179.70456 * 19 18 17 38 38 H 1.08002 * 119.94333 * 179.64014 * 24 20 19 39 39 H 1.08993 * 109.81399 * 299.58626 * 26 15 12 40 40 H 1.09005 * 109.81151 * 60.49104 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6591 -6.3658 0.0004 13 8 3.3568 -6.4261 1.2369 14 8 3.3549 -6.4262 -1.2371 15 7 1.7087 -7.7220 0.0005 16 6 1.2074 -8.4374 -1.1772 17 6 0.3891 -9.6062 -0.6897 18 6 -0.2989 -10.5892 -1.3805 19 6 -0.9900 -11.5663 -0.6906 20 6 -0.9839 -11.5705 0.6920 21 7 -1.7178 -12.6211 1.4326 22 8 -1.7176 -12.6207 2.6506 23 8 -2.3219 -13.4861 0.8239 24 6 -0.2985 -10.5893 1.3819 25 6 0.3900 -9.6067 0.6910 26 6 1.2082 -8.4378 1.1783 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8533 -5.0450 -0.8886 33 1 0.8539 -5.0445 0.8914 34 1 2.0447 -8.7965 -1.7755 35 1 0.5830 -7.7732 -1.7748 36 1 -0.2992 -10.5892 -2.4605 37 1 -1.5302 -12.3296 -1.2308 38 1 -0.2987 -10.5895 2.4619 39 1 2.0459 -8.7970 1.7759 40 1 0.5843 -7.7738 1.7767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252155436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:40 Heat of formation + Delta-G solvation = -68.111227 kcal Electronic energy + Delta-G solvation = -26145.584777 eV Core-core repulsion = 22054.922582 eV Total energy + Delta-G solvation = -4090.662196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.30083 -41.56494 -38.32355 -37.88212 -37.70105 -37.15858 -36.48093 -34.17760 -33.18487 -32.41156 -29.68622 -29.49020 -27.65792 -25.73598 -25.24371 -23.04313 -22.77790 -22.33679 -20.38309 -19.94618 -19.74565 -18.83593 -18.63674 -18.56730 -17.61624 -17.50560 -16.80640 -16.59840 -16.30374 -16.22728 -15.85850 -15.42888 -15.07505 -14.51204 -14.21002 -14.11726 -14.08800 -13.90815 -13.53957 -13.38762 -13.29366 -13.25188 -13.02440 -12.97914 -12.76963 -12.76453 -12.64730 -12.43928 -12.32974 -12.27849 -12.19563 -11.75775 -11.41435 -11.24414 -10.80379 -10.58352 -10.38908 -9.75663 -8.23874 -6.34584 -1.31966 -0.96199 -0.15445 0.19592 0.30595 1.40146 1.40491 1.47786 1.51758 2.12360 2.38905 2.66458 2.70684 3.02360 3.10137 3.22781 3.46393 3.62993 3.73131 3.80519 3.86591 3.98869 4.31373 4.36451 4.37659 4.41724 4.48224 4.60589 4.62343 4.63993 4.69004 4.81059 4.91315 4.95234 5.06195 5.08247 5.23658 5.38145 5.44994 5.62140 5.78731 6.18561 6.42910 6.81567 7.35041 8.87420 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002107 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.116960 B =13288.587733 C =13780.522949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.108 4.108 11 C -0.606 4.606 12 S 2.654 3.346 13 O -0.976 6.976 14 O -0.972 6.972 15 N -1.015 6.015 16 C 0.146 3.854 17 C -0.041 4.041 18 C -0.082 4.082 19 C -0.045 4.045 20 C -0.060 4.060 21 N 0.032 4.968 22 O -0.190 6.190 23 O -0.169 6.169 24 C -0.035 4.035 25 C -0.104 4.104 26 C 0.157 3.843 27 H 0.265 0.735 28 H 0.004 0.996 29 H 0.002 0.998 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.189 0.811 37 H 0.175 0.825 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -24.191 -3.303 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.738 4.738 12 S 2.752 3.248 13 O -0.967 6.967 14 O -0.963 6.963 15 N -0.852 5.852 16 C 0.022 3.978 17 C -0.043 4.043 18 C -0.101 4.101 19 C -0.064 4.064 20 C -0.144 4.144 21 N 0.547 4.453 22 O -0.400 6.400 23 O -0.385 6.385 24 C -0.055 4.055 25 C -0.106 4.106 26 C 0.032 3.968 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.206 0.794 37 H 0.193 0.807 38 H 0.180 0.820 39 H 0.116 0.884 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.421 -23.515 -3.614 23.795 hybrid contribution -0.773 0.906 0.540 1.308 sum -1.194 -22.609 -3.074 22.849 Atomic orbital electron populations 1.70064 1.07606 1.27873 1.51447 1.25921 0.95797 1.03209 0.94663 0.85499 0.78724 0.78628 0.78555 1.19717 1.20725 1.18890 1.21749 0.93782 0.92502 1.50894 0.92072 1.18964 0.94041 0.91808 0.95971 1.21333 0.98714 0.92322 1.02327 1.30537 1.16602 1.13204 1.13421 1.03806 0.74372 0.73689 0.72932 1.93550 1.70540 1.86070 1.46540 1.93549 1.70471 1.86060 1.46224 1.58357 1.70525 1.42889 1.13459 1.20421 0.98359 0.91483 0.87560 1.21029 0.94053 0.95070 0.94134 1.20869 0.95011 0.91310 1.02873 1.21291 0.96062 0.99013 0.90031 1.21062 1.05979 0.94035 0.93297 1.43865 0.98972 1.01256 1.01195 1.94556 1.67766 1.81487 0.96204 1.94521 1.42677 1.31368 1.69906 1.20268 0.92401 0.90220 1.02588 1.20194 0.99109 0.96614 0.94699 1.20166 0.97860 0.91224 0.87560 0.92666 0.97759 0.97913 0.91446 0.91208 0.83269 0.83597 0.87328 0.86434 0.79401 0.80722 0.82044 0.88440 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 13.29 21.44 0.28 -54.20 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.11 -3.99 5.16 30.60 0.16 -3.83 16 11 C -0.61 -15.48 6.18 71.99 0.44 -15.04 16 12 S 2.65 63.43 5.68 -56.49 -0.32 63.11 16 13 O -0.98 -29.31 17.65 -127.65 -2.25 -31.56 16 14 O -0.97 -28.17 17.65 -127.65 -2.25 -30.42 16 15 N -1.02 -16.54 3.64 -523.01 -1.90 -18.44 16 16 C 0.15 1.62 6.94 85.63 0.59 2.21 16 17 C -0.04 -0.41 6.22 -19.83 -0.12 -0.53 16 18 C -0.08 -0.51 10.05 22.30 0.22 -0.28 16 19 C -0.05 -0.43 9.55 22.25 0.21 -0.21 16 20 C -0.06 -0.91 6.85 36.36 0.25 -0.66 16 21 N 0.03 0.67 4.45 -46.50 -0.21 0.46 16 22 O -0.19 -4.45 18.45 18.88 0.35 -4.10 16 23 O -0.17 -3.66 18.45 18.88 0.35 -3.31 16 24 C -0.04 -0.47 9.56 22.30 0.21 -0.26 16 25 C -0.10 -1.29 6.22 -19.83 -0.12 -1.41 16 26 C 0.16 2.14 6.94 85.63 0.59 2.74 16 27 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.19 -0.15 8.06 -2.91 -0.02 -0.17 16 37 H 0.18 1.06 7.61 -2.91 -0.02 1.04 16 38 H 0.16 1.93 7.61 -2.91 -0.02 1.91 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -76.58 364.07 0.42 -76.15 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.07 Total: 2.27 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 3.29 Total: -45.07 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.82 Total: -72.18 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -3.81 Total: -69.40 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 63.43 SS G_CDS: -0.32 Total: 63.11 kcal Total: -76.58 0.42 -76.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252155436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.043 kcal (2) G-P(sol) polarization free energy of solvation -76.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds