Wall clock time and date at job start Sat Apr 11 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00241 * 3 2 1 5 5 H 1.48497 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47349 * 119.99690 * 3 2 1 7 7 C 1.38802 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00332 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.65065 * 179.97438 * 13 11 10 15 15 C 1.54325 * 107.27271 * 181.02622 * 14 13 11 16 16 H 1.08994 * 110.71826 * 140.56144 * 15 14 13 17 17 N 1.46503 * 110.71745 * 263.65728 * 15 14 13 18 18 C 1.34778 * 119.99845 * 273.54361 * 17 15 14 19 19 O 1.21616 * 119.99777 * 0.02562 * 18 17 15 20 20 C 1.47375 * 120.00212 * 180.02562 * 18 17 15 21 21 C 1.47024 * 127.19352 * 180.02562 * 20 18 17 22 22 C 1.34175 * 105.95251 * 180.02562 * 21 20 18 23 23 O 1.34214 * 109.12512 * 0.02562 * 22 21 20 24 24 C 1.33648 * 110.90974 * 359.72594 * 23 22 21 25 25 C 1.55154 * 102.94046 * 22.19453 * 15 14 13 26 26 H 1.09000 * 111.00382 * 82.60953 * 25 15 14 27 27 O 1.42905 * 111.00432 * 206.42100 * 25 15 14 28 28 C 1.47427 * 125.64680 * 359.69782 * 13 11 10 29 29 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 31 31 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 32 32 H 1.08996 * 109.88026 * 300.44758 * 14 13 11 33 33 H 1.09000 * 109.87922 * 61.45567 * 14 13 11 34 34 H 0.97000 * 120.00150 * 93.55195 * 17 15 14 35 35 H 1.07993 * 127.01938 * 0.02562 * 21 20 18 36 36 H 1.07994 * 125.43731 * 180.02562 * 22 21 20 37 37 H 1.08008 * 125.80221 * 180.28833 * 24 23 22 38 38 H 0.96694 * 114.00235 * 180.02562 * 27 25 15 39 39 H 1.08999 * 110.36527 * 274.74269 * 28 13 11 40 40 H 1.08992 * 110.37284 * 37.06356 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7914 -5.5023 0.0056 13 7 2.8444 -6.3430 0.0022 14 6 2.4670 -7.7640 0.0024 15 6 3.7734 -8.5851 0.0294 16 1 3.6695 -9.4538 0.6795 17 7 4.1555 -8.9956 -1.3240 18 6 3.6548 -10.1308 -1.8505 19 8 2.8854 -10.8140 -1.2022 20 6 4.0396 -10.5441 -3.2118 21 6 3.5923 -11.7425 -3.9366 22 6 4.2013 -11.6996 -5.1314 23 8 4.9671 -10.5992 -5.1954 24 6 4.8819 -9.8924 -4.0643 25 6 4.8024 -7.5818 0.6140 26 1 4.7485 -7.5565 1.7024 27 8 6.1267 -7.8931 0.1766 28 6 4.3154 -6.2446 -0.0032 29 1 -0.4850 0.8400 -0.0004 30 1 3.1240 -3.7309 0.8925 31 1 3.1253 -3.7317 -0.8875 32 1 1.8695 -7.9887 0.8860 33 1 1.8987 -7.9967 -0.8981 34 1 4.7690 -8.4505 -1.8411 35 1 2.9124 -12.5020 -3.5801 36 1 4.0926 -12.4333 -5.9163 37 1 5.3947 -8.9642 -3.8592 38 1 6.8045 -7.2932 0.5169 39 1 4.6847 -6.1384 -1.0231 40 1 4.6417 -5.4038 0.6088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281864748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:53 Heat of formation + Delta-G solvation = -89.319934 kcal Electronic energy + Delta-G solvation = -26379.957099 eV Core-core repulsion = 22288.375224 eV Total energy + Delta-G solvation = -4091.581874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.89205 -40.64101 -39.17684 -37.95083 -35.80260 -34.30516 -33.18189 -32.47196 -31.04060 -29.93871 -29.02774 -28.06109 -25.54395 -24.40082 -23.43704 -21.86031 -21.22248 -20.53079 -19.49611 -18.84858 -18.00374 -17.73480 -16.95539 -16.51328 -16.38543 -16.35513 -15.53368 -15.39186 -15.19154 -14.91257 -14.84544 -14.38678 -13.98623 -13.79997 -13.57319 -13.46820 -13.26674 -12.98858 -12.76315 -12.62147 -12.42063 -12.31514 -11.85510 -11.40195 -11.09186 -11.07587 -10.81592 -10.69438 -10.31675 -10.17669 -9.87818 -9.60199 -9.38494 -9.17425 -9.10169 -8.65638 -8.29073 -6.55596 -6.25475 -3.97069 0.98696 1.72761 2.52843 2.65299 2.82386 2.96822 3.07268 3.19902 3.19961 3.25655 3.43869 3.65372 4.01748 4.14052 4.17768 4.22782 4.30717 4.64150 4.68434 4.89521 4.96592 5.05255 5.09417 5.13697 5.21709 5.29724 5.44343 5.50349 5.52782 5.54326 5.72503 5.80607 5.90991 6.03705 6.11732 6.23793 6.56324 7.05866 7.18711 7.50093 7.54777 7.93042 8.30381 8.45006 9.19337 10.81862 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.002268 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.707207 B =12342.239031 C =12610.267139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.508 6.508 13 N -0.624 5.624 14 C 0.099 3.901 15 C 0.147 3.853 16 H 0.114 0.886 17 N -0.706 5.706 18 C 0.590 3.410 19 O -0.534 6.534 20 C -0.235 4.235 21 C -0.164 4.164 22 C -0.041 4.041 23 O -0.174 6.174 24 C 0.025 3.975 25 C 0.086 3.914 26 H 0.094 0.906 27 O -0.552 6.552 28 C 0.069 3.931 29 H 0.270 0.730 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.211 0.789 38 H 0.387 0.613 39 H 0.076 0.924 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.521 -21.040 -5.279 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.381 6.381 13 N -0.363 5.363 14 C -0.025 4.025 15 C 0.042 3.958 16 H 0.132 0.868 17 N -0.358 5.358 18 C 0.378 3.622 19 O -0.412 6.412 20 C -0.239 4.239 21 C -0.184 4.184 22 C -0.107 4.107 23 O -0.069 6.069 24 C -0.046 4.046 25 C 0.025 3.975 26 H 0.111 0.889 27 O -0.357 6.357 28 C -0.055 4.055 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.239 0.761 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.228 0.772 38 H 0.236 0.764 39 H 0.094 0.906 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.796 -22.060 -5.356 26.564 hybrid contribution 2.450 2.016 0.181 3.178 sum 16.246 -20.044 -5.176 26.315 Atomic orbital electron populations 1.70001 1.05964 1.27653 1.46557 1.24997 0.95033 0.99040 0.94484 0.86219 0.79242 0.81223 0.78779 1.19936 1.20776 1.19924 1.22799 0.94815 0.91579 1.59312 0.90988 1.85465 1.04737 0.96312 1.96716 1.23512 1.06604 0.94848 1.04724 1.20078 0.85670 0.85345 0.75190 1.90733 1.14854 1.84971 1.47577 1.48363 1.05952 1.05656 1.76348 1.22378 0.96105 0.80268 1.03778 1.21969 0.92243 0.97333 0.84303 0.86770 1.45516 1.49030 1.24830 1.16451 1.17263 0.80021 0.80207 0.84731 1.90807 1.35072 1.53666 1.61611 1.21495 1.05997 0.99788 0.96644 1.22798 1.03271 0.98694 0.93632 1.23974 0.96225 0.90322 1.00148 1.83803 1.55404 1.30950 1.36724 1.24476 0.99134 0.97214 0.83780 1.23302 0.82739 0.92883 0.98585 0.88866 1.86472 1.15740 1.57754 1.75724 1.23023 0.81684 0.98813 1.01966 0.92055 0.89265 0.89325 0.89955 0.90466 0.76149 0.82227 0.77404 0.77241 0.76425 0.90627 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.88 5.16 36.01 0.19 -2.69 16 11 C 0.55 10.30 7.87 -10.98 -0.09 10.21 16 12 O -0.51 -11.78 16.19 5.56 0.09 -11.69 16 13 N -0.62 -8.44 3.33 -170.39 -0.57 -9.01 16 14 C 0.10 1.24 6.60 -3.06 -0.02 1.22 16 15 C 0.15 1.40 3.13 -66.10 -0.21 1.19 16 16 H 0.11 1.13 7.69 -51.93 -0.40 0.73 16 17 N -0.71 -6.51 4.78 -53.12 -0.25 -6.76 16 18 C 0.59 6.88 7.81 -12.54 -0.10 6.79 16 19 O -0.53 -8.15 16.71 5.26 0.09 -8.06 16 20 C -0.23 -2.30 6.31 -103.28 -0.65 -2.95 16 21 C -0.16 -1.46 11.01 -37.45 -0.41 -1.87 16 22 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 23 O -0.17 -1.33 10.52 7.67 0.08 -1.25 16 24 C 0.02 0.18 11.61 30.08 0.35 0.52 16 25 C 0.09 0.60 4.23 -24.48 -0.10 0.49 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 O -0.55 -3.04 12.64 -35.23 -0.45 -3.49 16 28 C 0.07 0.61 6.41 -2.42 -0.02 0.60 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.59 7.85 -51.92 -0.41 1.18 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.40 2.84 7.18 -40.82 -0.29 2.55 16 35 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.21 0.74 7.47 -52.48 -0.39 0.34 16 38 H 0.39 0.60 9.12 45.56 0.42 1.02 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.70 7.48 -51.93 -0.39 0.31 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -39.07 365.65 -6.47 -45.54 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.96 Total: 1.31 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.51 Total: 0.86 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.09 Total: -40.94 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.19 Total: -24.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.07 -6.47 -45.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281864748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.778 kcal (2) G-P(sol) polarization free energy of solvation -39.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds