Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48495 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47094 * 300.00408 * 3 2 1 6 6 H 1.48500 * 109.46825 * 60.00121 * 3 2 1 7 7 C 1.38949 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 197.98960 * 7 2 1 9 9 N 1.37096 * 119.99990 * 17.99502 * 7 2 1 10 10 C 1.34777 * 120.00469 * 44.48757 * 9 7 2 11 11 O 1.21291 * 119.99567 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00072 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.46595 * 179.97438 * 12 10 9 14 14 C 1.35902 * 116.99372 * 179.97438 * 13 12 10 15 15 C 1.38726 * 120.05783 * 359.72052 * 14 13 12 16 16 C 1.38153 * 119.94383 * 179.77048 * 15 14 13 17 17 C 1.38262 * 120.05285 * 0.50793 * 16 15 14 18 18 S 1.76202 * 119.94207 * 179.72300 * 17 16 15 19 19 N 1.65601 * 107.21688 * 270.02456 * 18 17 16 20 20 O 1.42095 * 106.40330 * 23.56379 * 18 17 16 21 21 O 1.42099 * 106.40285 * 156.48319 * 18 17 16 22 22 C 1.38264 * 120.11286 * 359.74597 * 17 16 15 23 23 C 1.38143 * 120.05499 * 0.02562 * 22 17 16 24 24 C 1.46510 * 119.99733 * 224.48742 * 9 7 2 25 25 C 1.53000 * 117.49912 * 3.26926 * 24 9 7 26 26 C 1.53004 * 117.49528 * 294.60954 * 24 9 7 27 27 H 0.96997 * 119.99849 * 354.95860 * 1 2 3 28 28 H 1.08999 * 109.47323 * 59.99942 * 12 10 9 29 29 H 1.08997 * 109.46715 * 299.99183 * 12 10 9 30 30 H 1.08004 * 120.03358 * 0.02562 * 15 14 13 31 31 H 1.07992 * 119.97117 * 180.25872 * 16 15 14 32 32 H 0.97001 * 119.99972 * 150.00668 * 19 18 17 33 33 H 0.96992 * 119.99982 * 329.99426 * 19 18 17 34 34 H 1.08007 * 119.97130 * 180.02562 * 22 17 16 35 35 H 1.08003 * 120.02419 * 179.97438 * 23 22 17 36 36 H 1.08994 * 115.54738 * 148.94241 * 24 9 7 37 37 H 1.09004 * 117.49690 * 0.02562 * 25 24 9 38 38 H 1.08997 * 117.50084 * 145.01886 * 25 24 9 39 39 H 1.08995 * 117.49708 * 214.97601 * 26 24 9 40 40 H 1.08999 * 117.50100 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0493 -1.2264 0.2883 9 7 1.3736 -2.3614 -0.3678 10 6 0.5768 -2.3775 -1.4547 11 8 0.4212 -1.3672 -2.1075 12 6 -0.1219 -3.6504 -1.8580 13 8 -0.9024 -3.4139 -3.0315 14 6 -1.6006 -4.4677 -3.5306 15 6 -1.5312 -5.7051 -2.9073 16 6 -2.2456 -6.7735 -3.4139 17 6 -3.0210 -6.6129 -4.5473 18 16 -3.9252 -7.9794 -5.1952 19 7 -2.9380 -8.7514 -6.2777 20 8 -4.1185 -8.8813 -4.1144 21 8 -4.9965 -7.4300 -5.9501 22 6 -3.0876 -5.3819 -5.1735 23 6 -2.3789 -4.3093 -4.6681 24 6 1.5611 -3.5816 0.4211 25 6 2.4159 -3.4807 1.6860 26 6 2.9617 -4.1971 0.4482 27 1 -0.4850 0.8368 0.0738 28 1 -0.7737 -3.9793 -1.0487 29 1 0.6197 -4.4222 -2.0639 30 1 -0.9224 -5.8321 -2.0242 31 1 -2.1952 -7.7359 -2.9266 32 1 -3.0267 -9.7070 -6.4190 33 1 -2.2713 -8.2481 -6.7706 34 1 -3.6944 -5.2589 -6.0585 35 1 -2.4310 -3.3481 -5.1578 36 1 0.7112 -4.2637 0.4411 37 1 2.8384 -2.5063 1.9315 38 1 2.1285 -4.0965 2.5382 39 1 3.0331 -5.2840 0.4866 40 1 3.7434 -3.6944 -0.1212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292149082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = -72.760161 kcal Electronic energy + Delta-G solvation = -26807.552977 eV Core-core repulsion = 22716.689188 eV Total energy + Delta-G solvation = -4090.863789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.30571 -38.72275 -37.41244 -37.32280 -36.04318 -35.98842 -33.45716 -32.94645 -31.46231 -31.12975 -30.48888 -28.13675 -24.85440 -23.16529 -22.76809 -21.85193 -21.35314 -19.81398 -19.54715 -18.70995 -17.96903 -17.58547 -16.89018 -16.49579 -16.24623 -15.96778 -15.78508 -15.24455 -14.84944 -14.69341 -14.36153 -13.89681 -13.69925 -13.52851 -13.44834 -13.17280 -12.66654 -12.52730 -12.37211 -12.26719 -12.15563 -11.86004 -11.33271 -11.22541 -11.13953 -11.05155 -10.96949 -10.94991 -10.70604 -10.61896 -10.24716 -10.13424 -9.91103 -9.30409 -8.84972 -8.64483 -8.21620 -7.21123 -6.24034 -4.01975 0.23542 0.75724 1.11319 2.92202 3.05194 3.23656 3.28825 3.32912 3.35387 3.59520 3.85962 4.17353 4.28836 4.56903 4.57879 4.63623 4.76465 4.98697 5.09198 5.18659 5.31862 5.36547 5.39797 5.46367 5.54556 5.61896 5.68353 5.71181 5.80703 5.87959 5.91824 6.08689 6.12379 6.28156 6.48017 6.57629 6.73363 6.79966 7.31217 7.50648 8.12351 8.86919 8.97602 9.47005 10.06136 10.84865 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002489 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.633538 B =11246.096183 C =12165.435826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.349 4.349 8 H 0.082 0.918 9 N -0.421 5.421 10 C 0.482 3.518 11 O -0.510 6.510 12 C 0.042 3.958 13 O -0.273 6.273 14 C 0.201 3.799 15 C -0.236 4.236 16 C 0.025 3.975 17 C -0.728 4.728 18 S 2.709 3.291 19 N -1.251 6.251 20 O -0.969 6.969 21 O -0.967 6.967 22 C 0.015 3.985 23 C -0.175 4.175 24 C 0.065 3.935 25 C -0.169 4.169 26 C -0.206 4.206 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.419 0.581 33 H 0.417 0.583 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -16.981 -7.696 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.139 4.139 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.476 4.476 8 H 0.100 0.900 9 N -0.144 5.144 10 C 0.267 3.733 11 O -0.385 6.385 12 C -0.036 4.036 13 O -0.183 6.183 14 C 0.152 3.848 15 C -0.256 4.256 16 C 0.006 3.994 17 C -0.817 4.817 18 S 2.798 3.202 19 N -0.924 5.924 20 O -0.958 6.958 21 O -0.956 6.956 22 C -0.004 4.004 23 C -0.194 4.194 24 C -0.041 4.041 25 C -0.206 4.206 26 C -0.245 4.245 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.248 0.752 33 H 0.244 0.756 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.393 -16.235 -7.823 18.338 hybrid contribution 1.259 0.849 0.257 1.540 sum -2.133 -15.386 -7.566 17.278 Atomic orbital electron populations 1.69820 1.06643 1.27725 1.42123 1.25306 0.94897 0.99653 0.94042 0.86100 0.79750 0.82283 0.77643 1.19468 1.20510 1.21027 1.18897 0.94550 0.83445 1.50674 0.90028 1.42606 1.43976 1.07317 1.20453 1.19210 0.83932 0.87801 0.82349 1.90588 1.61578 1.33813 1.52535 1.22926 0.94355 1.00579 0.85769 1.86294 1.57063 1.32504 1.42426 1.19595 0.87631 0.86525 0.91056 1.21466 1.06763 0.93088 1.04281 1.20663 0.88850 0.98866 0.91030 1.30291 1.23305 1.16523 1.11563 1.01226 0.72909 0.73025 0.73043 1.53181 1.56552 1.21197 1.61457 1.93581 1.84784 1.63466 1.54012 1.93599 1.50991 1.79527 1.71466 1.20714 0.92655 0.90131 0.96888 1.20614 1.00712 1.00947 0.97131 1.21776 0.92749 0.91516 0.98057 1.23078 1.03945 1.02627 0.90973 1.23353 0.99368 0.98609 1.03169 0.92344 0.90297 0.90176 0.84205 0.83989 0.75171 0.75610 0.83601 0.83879 0.88162 0.87270 0.89594 0.89619 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.10 11.74 55.50 0.65 -23.44 16 2 C 0.07 1.98 4.39 -17.47 -0.08 1.90 16 3 Si 0.92 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.35 -9.13 7.91 -14.93 -0.12 -9.25 16 8 H 0.08 2.05 7.27 -52.49 -0.38 1.67 16 9 N -0.42 -10.00 2.83 -107.72 -0.31 -10.31 16 10 C 0.48 11.84 7.04 -10.99 -0.08 11.76 16 11 O -0.51 -14.97 14.27 -14.36 -0.20 -15.17 16 12 C 0.04 0.78 3.84 36.01 0.14 0.92 16 13 O -0.27 -5.23 9.67 -39.34 -0.38 -5.61 16 14 C 0.20 3.06 6.69 -39.22 -0.26 2.80 16 15 C -0.24 -3.00 9.04 -39.43 -0.36 -3.35 16 16 C 0.03 0.28 9.52 -39.60 -0.38 -0.10 16 17 C -0.73 -7.76 5.97 -39.56 -0.24 -7.99 16 18 S 2.71 25.53 6.28 -107.50 -0.68 24.86 16 19 N -1.25 -6.59 9.52 60.35 0.57 -6.01 16 20 O -0.97 -11.92 17.28 -57.17 -0.99 -12.91 16 21 O -0.97 -12.10 17.28 -57.17 -0.99 -13.09 16 22 C 0.02 0.17 9.52 -39.61 -0.38 -0.20 16 23 C -0.17 -2.33 9.99 -39.43 -0.39 -2.72 16 24 C 0.07 1.19 5.87 -67.92 -0.40 0.79 16 25 C -0.17 -2.79 9.80 -26.69 -0.26 -3.05 16 26 C -0.21 -3.17 10.36 -26.69 -0.28 -3.45 16 27 H 0.27 7.40 8.32 -40.82 -0.34 7.06 16 28 H 0.08 1.30 7.10 -51.93 -0.37 0.94 16 29 H 0.08 1.21 7.61 -51.93 -0.40 0.82 16 30 H 0.14 1.54 6.30 -52.48 -0.33 1.21 16 31 H 0.14 1.27 7.61 -52.49 -0.40 0.87 16 32 H 0.42 1.48 8.96 -34.47 -0.31 1.17 16 33 H 0.42 1.38 8.96 -34.47 -0.31 1.07 16 34 H 0.15 1.28 7.61 -52.48 -0.40 0.88 16 35 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.10 1.58 6.96 -51.93 -0.36 1.22 16 37 H 0.11 2.02 6.73 -51.93 -0.35 1.68 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -38.00 355.64 -9.49 -47.48 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.43 Total: 4.48 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.07 Total: -11.95 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.92 Total: -39.76 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -2.56 Total: -46.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 25.53 SS G_CDS: -0.68 Total: 24.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.00 -9.49 -47.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292149082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.275 kcal (2) G-P(sol) polarization free energy of solvation -37.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds