Wall clock time and date at job start Sat Apr 11 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48495 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47094 * 300.00408 * 3 2 1 6 6 H 1.48500 * 109.46825 * 60.00121 * 3 2 1 7 7 C 1.38949 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 197.98960 * 7 2 1 9 9 N 1.37096 * 119.99990 * 17.99502 * 7 2 1 10 10 C 1.34777 * 120.00469 * 44.48757 * 9 7 2 11 11 O 1.21291 * 119.99567 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00072 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.46595 * 179.97438 * 12 10 9 14 14 C 1.35902 * 116.99372 * 179.97438 * 13 12 10 15 15 C 1.38726 * 120.05783 * 359.72052 * 14 13 12 16 16 C 1.38153 * 119.94383 * 179.77048 * 15 14 13 17 17 C 1.38262 * 120.05285 * 0.50793 * 16 15 14 18 18 S 1.76202 * 119.94207 * 179.72300 * 17 16 15 19 19 N 1.65601 * 107.21688 * 270.02456 * 18 17 16 20 20 O 1.42095 * 106.40330 * 23.56379 * 18 17 16 21 21 O 1.42099 * 106.40285 * 156.48319 * 18 17 16 22 22 C 1.38264 * 120.11286 * 359.74597 * 17 16 15 23 23 C 1.38143 * 120.05499 * 0.02562 * 22 17 16 24 24 C 1.46510 * 119.99733 * 224.48742 * 9 7 2 25 25 C 1.53000 * 117.49912 * 3.26926 * 24 9 7 26 26 C 1.53004 * 117.49528 * 294.60954 * 24 9 7 27 27 H 0.96997 * 119.99849 * 354.95860 * 1 2 3 28 28 H 1.08999 * 109.47323 * 59.99942 * 12 10 9 29 29 H 1.08997 * 109.46715 * 299.99183 * 12 10 9 30 30 H 1.08004 * 120.03358 * 0.02562 * 15 14 13 31 31 H 1.07992 * 119.97117 * 180.25872 * 16 15 14 32 32 H 0.97001 * 119.99972 * 150.00668 * 19 18 17 33 33 H 0.96992 * 119.99982 * 329.99426 * 19 18 17 34 34 H 1.08007 * 119.97130 * 180.02562 * 22 17 16 35 35 H 1.08003 * 120.02419 * 179.97438 * 23 22 17 36 36 H 1.08994 * 115.54738 * 148.94241 * 24 9 7 37 37 H 1.09004 * 117.49690 * 0.02562 * 25 24 9 38 38 H 1.08997 * 117.50084 * 145.01886 * 25 24 9 39 39 H 1.08995 * 117.49708 * 214.97601 * 26 24 9 40 40 H 1.08999 * 117.50100 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0493 -1.2264 0.2883 9 7 1.3736 -2.3614 -0.3678 10 6 0.5768 -2.3775 -1.4547 11 8 0.4212 -1.3672 -2.1075 12 6 -0.1219 -3.6504 -1.8580 13 8 -0.9024 -3.4139 -3.0315 14 6 -1.6006 -4.4677 -3.5306 15 6 -1.5312 -5.7051 -2.9073 16 6 -2.2456 -6.7735 -3.4139 17 6 -3.0210 -6.6129 -4.5473 18 16 -3.9252 -7.9794 -5.1952 19 7 -2.9380 -8.7514 -6.2777 20 8 -4.1185 -8.8813 -4.1144 21 8 -4.9965 -7.4300 -5.9501 22 6 -3.0876 -5.3819 -5.1735 23 6 -2.3789 -4.3093 -4.6681 24 6 1.5611 -3.5816 0.4211 25 6 2.4159 -3.4807 1.6860 26 6 2.9617 -4.1971 0.4482 27 1 -0.4850 0.8368 0.0738 28 1 -0.7737 -3.9793 -1.0487 29 1 0.6197 -4.4222 -2.0639 30 1 -0.9224 -5.8321 -2.0242 31 1 -2.1952 -7.7359 -2.9266 32 1 -3.0267 -9.7070 -6.4190 33 1 -2.2713 -8.2481 -6.7706 34 1 -3.6944 -5.2589 -6.0585 35 1 -2.4310 -3.3481 -5.1578 36 1 0.7112 -4.2637 0.4411 37 1 2.8384 -2.5063 1.9315 38 1 2.1285 -4.0965 2.5382 39 1 3.0331 -5.2840 0.4866 40 1 3.7434 -3.6944 -0.1212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292149082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:54 Heat of formation + Delta-G solvation = -102.336211 kcal Electronic energy + Delta-G solvation = -26808.835490 eV Core-core repulsion = 22716.689188 eV Total energy + Delta-G solvation = -4092.146302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48988 -40.29934 -38.60355 -38.20606 -37.63651 -36.88284 -34.83378 -33.98896 -33.05117 -32.31629 -31.55520 -29.64146 -26.65512 -24.14528 -23.88979 -23.13219 -22.83642 -21.32180 -20.49886 -19.66233 -18.94800 -18.48326 -18.27147 -17.94176 -17.40816 -17.26402 -16.83926 -16.63797 -16.22755 -15.85259 -15.70025 -15.46721 -14.96607 -14.76344 -14.61791 -14.39519 -13.96302 -13.84260 -13.55192 -13.19101 -13.15782 -13.06639 -12.99361 -12.86703 -12.79375 -12.31231 -12.18751 -12.12120 -12.06223 -11.97642 -11.71569 -11.26817 -11.25458 -10.79012 -10.22171 -10.07675 -9.72280 -9.07055 -8.26855 -6.06361 -0.55181 -0.19916 0.18165 1.33031 1.41753 1.49228 1.76673 2.12396 2.17765 2.35271 2.42243 2.81574 3.07497 3.10345 3.28730 3.43957 3.61904 3.78223 3.87903 4.00208 4.11356 4.15087 4.17629 4.25148 4.33943 4.44076 4.47484 4.79193 4.86451 4.91288 4.97750 5.01940 5.14865 5.26667 5.32920 5.43746 5.49252 5.54543 6.09769 6.22307 6.41058 6.93790 7.10528 7.57012 8.21115 8.81816 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002489 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.633538 B =11246.096183 C =12165.435826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.255 1.255 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.354 4.354 8 H 0.085 0.915 9 N -0.435 5.435 10 C 0.462 3.538 11 O -0.576 6.576 12 C 0.059 3.941 13 O -0.313 6.313 14 C 0.169 3.831 15 C -0.235 4.235 16 C 0.025 3.975 17 C -0.721 4.721 18 S 2.739 3.261 19 N -1.232 6.232 20 O -0.993 6.993 21 O -0.996 6.996 22 C 0.019 3.981 23 C -0.190 4.190 24 C 0.034 3.966 25 C -0.169 4.169 26 C -0.176 4.176 27 H 0.260 0.740 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.430 0.570 33 H 0.429 0.571 34 H 0.169 0.831 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -20.438 -7.567 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.187 4.187 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.102 0.898 9 N -0.157 5.157 10 C 0.250 3.750 11 O -0.456 6.456 12 C -0.019 4.019 13 O -0.224 6.224 14 C 0.122 3.878 15 C -0.255 4.255 16 C 0.006 3.994 17 C -0.809 4.809 18 S 2.827 3.173 19 N -0.911 5.911 20 O -0.983 6.983 21 O -0.985 6.985 22 C 0.000 4.000 23 C -0.209 4.209 24 C -0.070 4.070 25 C -0.207 4.207 26 C -0.214 4.214 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.263 0.737 33 H 0.259 0.741 34 H 0.186 0.814 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.722 -19.744 -7.658 21.352 hybrid contribution 1.077 1.743 0.139 2.054 sum -1.644 -18.001 -7.520 19.577 Atomic orbital electron populations 1.69931 1.08130 1.27772 1.44822 1.26127 0.95538 1.02899 0.94171 0.85243 0.79404 0.78682 0.77097 1.17808 1.22405 1.19686 1.19150 0.94859 0.84825 1.49239 0.89787 1.42860 1.43352 1.08463 1.21027 1.20250 0.83726 0.89192 0.81821 1.90533 1.63847 1.36651 1.54599 1.22652 0.95148 0.97481 0.86581 1.86224 1.58378 1.34904 1.42918 1.19868 0.88851 0.86781 0.92341 1.21673 1.06955 0.92241 1.04586 1.21007 0.88054 0.99482 0.90905 1.30565 1.22300 1.16749 1.11288 1.00211 0.72416 0.72056 0.72587 1.52740 1.56184 1.21861 1.60362 1.93549 1.85354 1.63906 1.55496 1.93574 1.52812 1.80105 1.72002 1.20966 0.92059 0.89601 0.97406 1.20785 1.01260 1.01700 0.97188 1.22157 0.95544 0.90301 0.99048 1.23142 1.03243 1.02258 0.92021 1.23373 0.96255 1.00735 1.01062 0.93065 0.88454 0.86670 0.82406 0.81412 0.73685 0.74090 0.81408 0.84329 0.85154 0.90042 0.86267 0.85239 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.91 11.74 21.66 0.25 -52.66 16 2 C 0.02 1.08 4.39 84.93 0.37 1.45 16 3 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 4 H -0.25 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.35 -18.91 7.91 84.04 0.66 -18.24 16 8 H 0.08 4.31 7.27 -2.91 -0.02 4.29 16 9 N -0.44 -20.86 2.83 -613.11 -1.74 -22.59 16 10 C 0.46 23.29 7.04 87.66 0.62 23.91 16 11 O -0.58 -35.60 14.27 15.97 0.23 -35.38 16 12 C 0.06 2.15 3.84 71.24 0.27 2.43 16 13 O -0.31 -12.25 9.67 -73.42 -0.71 -12.96 16 14 C 0.17 5.09 6.69 22.50 0.15 5.24 16 15 C -0.24 -5.46 9.04 22.37 0.20 -5.26 16 16 C 0.02 0.47 9.52 22.26 0.21 0.69 16 17 C -0.72 -13.64 5.97 22.28 0.13 -13.51 16 18 S 2.74 44.56 6.28 -56.49 -0.35 44.21 16 19 N -1.23 -9.03 9.52 37.02 0.35 -8.68 16 20 O -0.99 -21.81 17.28 -128.00 -2.21 -24.02 16 21 O -1.00 -22.86 17.28 -128.00 -2.21 -25.07 16 22 C 0.02 0.39 9.52 22.25 0.21 0.60 16 23 C -0.19 -5.07 9.99 22.36 0.22 -4.85 16 24 C 0.03 1.17 5.87 44.99 0.26 1.44 16 25 C -0.17 -5.20 9.80 30.62 0.30 -4.90 16 26 C -0.18 -4.83 10.36 30.62 0.32 -4.52 16 27 H 0.26 15.26 8.32 -92.71 -0.77 14.49 16 28 H 0.10 3.09 7.10 -2.39 -0.02 3.07 16 29 H 0.12 3.24 7.61 -2.39 -0.02 3.22 16 30 H 0.16 2.96 6.30 -2.91 -0.02 2.94 16 31 H 0.17 2.35 7.61 -2.91 -0.02 2.33 16 32 H 0.43 1.61 8.96 -96.74 -0.87 0.74 16 33 H 0.43 1.40 8.96 -96.75 -0.87 0.53 16 34 H 0.17 2.65 7.61 -2.91 -0.02 2.63 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.13 3.67 6.96 -2.39 -0.02 3.65 16 37 H 0.08 2.98 6.73 -2.39 -0.02 2.96 16 38 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -87.63 355.64 -1.03 -88.66 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.62 Total: 16.72 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.94 Total: -15.53 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.13 Total: -83.93 kcal Atomic # 8 Polarization: -92.52 SS G_CDS: -4.90 Total: -97.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 44.56 SS G_CDS: -0.35 Total: 44.21 kcal Total: -87.63 -1.03 -88.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292149082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -87.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds