Wall clock time and date at job start Sat Apr 11 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46918 * 179.97438 * 11 10 9 13 13 O 1.42099 * 110.54231 * 291.62532 * 12 11 10 14 14 O 1.42093 * 110.54399 * 68.37981 * 12 11 10 15 15 N 1.65608 * 104.44721 * 180.02562 * 12 11 10 16 16 C 1.46922 * 120.62863 * 90.00444 * 15 12 11 17 17 C 1.53195 * 108.77635 * 126.36671 * 16 15 12 18 18 C 1.53044 * 109.30996 * 54.63194 * 17 16 15 19 19 C 1.53037 * 109.53693 * 298.63150 * 18 17 16 20 20 H 1.08996 * 109.50323 * 301.41968 * 19 18 17 21 21 S 1.81400 * 109.49603 * 181.31855 * 19 18 17 22 22 N 1.65605 * 104.44825 * 60.00502 * 21 19 18 23 23 O 1.42103 * 110.54192 * 171.62788 * 21 19 18 24 24 O 1.42093 * 110.54517 * 308.37726 * 21 19 18 25 25 C 1.46924 * 120.62676 * 269.71568 * 15 12 11 26 26 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 28 28 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 29 29 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 30 30 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 31 31 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 32 32 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 33 33 H 1.09002 * 109.58346 * 246.15001 * 16 15 12 34 34 H 1.08993 * 109.59275 * 6.43545 * 16 15 12 35 35 H 1.09000 * 109.49321 * 174.58113 * 17 16 15 36 36 H 1.08991 * 109.49812 * 294.64944 * 17 16 15 37 37 H 1.08999 * 109.46010 * 58.65504 * 18 17 16 38 38 H 1.09001 * 109.45389 * 178.61617 * 18 17 16 39 39 H 0.97002 * 119.99701 * 150.00446 * 22 21 19 40 40 H 0.96994 * 120.00001 * 329.99273 * 22 21 19 41 41 H 1.08995 * 109.59160 * 353.42498 * 25 15 12 42 42 H 1.08999 * 109.58059 * 113.84872 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 16 2.6590 -6.3659 -0.0025 13 8 3.3558 -6.4257 -1.2394 14 8 3.3556 -6.4268 1.2345 15 7 1.7085 -7.7220 -0.0037 16 6 1.2795 -8.3342 -1.2686 17 6 1.6670 -9.8163 -1.2555 18 6 1.0843 -10.4807 -0.0060 19 6 1.6665 -9.8182 1.2447 20 1 2.7525 -9.9101 1.2331 21 16 1.0049 -10.6322 2.7247 22 7 1.4879 -12.2096 2.5794 23 8 1.6723 -10.1673 3.8899 24 8 -0.4136 -10.6934 2.6681 25 6 1.2836 -8.3394 1.2600 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5575 0.8880 28 1 0.6246 -2.5563 -0.8919 29 1 2.8725 -3.6039 -0.8910 30 1 2.8713 -3.6047 0.8890 31 1 0.8532 -5.0450 0.8876 32 1 0.8540 -5.0446 -0.8922 33 1 0.1985 -8.2401 -1.3718 34 1 1.7712 -7.8332 -2.1024 35 1 1.2698 -10.3040 -2.1457 36 1 2.7530 -9.9083 -1.2441 37 1 0.0003 -10.3668 -0.0062 38 1 1.3379 -11.5408 -0.0068 39 1 1.6547 -12.7408 3.3737 40 1 1.6037 -12.6023 1.7001 41 1 1.7799 -7.8435 2.0941 42 1 0.2029 -8.2457 1.3671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319935701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:09 Heat of formation + Delta-G solvation = -158.731943 kcal Electronic energy + Delta-G solvation = -26181.636465 eV Core-core repulsion = 22222.488612 eV Total energy + Delta-G solvation = -3959.147853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.00271 -37.39159 -37.11143 -36.30096 -35.87681 -34.71257 -33.86626 -32.88372 -32.21468 -31.82428 -27.85159 -25.20545 -24.32953 -23.70487 -21.37335 -20.58102 -19.77337 -19.03340 -18.28665 -17.78037 -17.55434 -16.72153 -16.35980 -16.22849 -15.90261 -15.74710 -15.13792 -14.98127 -14.53560 -14.38953 -14.22644 -14.10149 -13.61914 -12.67924 -12.63387 -12.54220 -12.45807 -12.33069 -12.31985 -12.19547 -12.15485 -12.03591 -11.84556 -11.63360 -11.50305 -11.32803 -11.14457 -10.99943 -10.94029 -10.88752 -10.60706 -10.45522 -9.98971 -9.63167 -9.30806 -9.06271 -8.42576 -6.07455 -4.10762 -0.21960 0.29983 2.41142 2.55943 3.25112 3.29433 3.35687 3.39711 3.65767 3.79153 3.90780 4.13955 4.27779 4.35241 4.41327 4.49479 4.65950 4.76017 4.95217 5.04768 5.10384 5.11421 5.20946 5.27464 5.29066 5.36980 5.37770 5.55341 5.72715 5.78165 5.83465 6.14993 6.26600 6.39501 6.59052 6.82779 7.54215 7.63701 7.90265 8.30316 8.95383 9.54164 11.03750 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.002549 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.580881 B =10982.853650 C =11484.347220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.606 4.606 12 S 2.592 3.408 13 O -0.956 6.956 14 O -0.956 6.956 15 N -0.996 5.996 16 C 0.111 3.889 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.602 4.602 20 H 0.148 0.852 21 S 2.618 3.382 22 N -1.249 6.249 23 O -0.955 6.955 24 O -0.954 6.954 25 C 0.133 3.867 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.421 0.579 40 H 0.412 0.588 41 H 0.112 0.888 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 -27.919 -0.776 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.690 3.310 13 O -0.946 6.946 14 O -0.946 6.946 15 N -0.832 5.832 16 C -0.014 4.014 17 C -0.164 4.164 18 C -0.142 4.142 19 C -0.713 4.713 20 H 0.166 0.834 21 S 2.708 3.292 22 N -0.922 5.922 23 O -0.944 6.944 24 O -0.943 6.943 25 C 0.005 3.995 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.239 0.761 41 H 0.130 0.870 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.867 -27.257 -0.015 27.271 hybrid contribution 0.279 0.669 -0.649 0.973 sum 1.146 -26.588 -0.664 26.621 Atomic orbital electron populations 1.69960 1.06094 1.26821 1.50521 1.25021 0.94895 0.99392 0.95063 0.86547 0.79885 0.83145 0.78187 1.20564 1.21144 1.19734 1.21243 0.93249 0.90867 1.51166 0.92366 1.19066 0.93503 0.90397 0.97791 1.21524 0.99440 0.91622 1.02008 1.30585 1.16246 1.15566 1.11459 1.05683 0.75921 0.75051 0.74320 1.93561 1.70075 1.85767 1.45188 1.93573 1.70175 1.85716 1.45161 1.57849 1.70968 1.43760 1.10663 1.21541 1.00655 0.93931 0.85245 1.21773 1.01976 0.95419 0.97183 1.21360 1.01712 0.98633 0.92545 1.30743 1.13881 1.08515 1.18123 0.83381 1.04804 0.75032 0.73872 0.75467 1.53218 1.89890 1.32342 1.16782 1.93643 1.75996 1.80194 1.44590 1.93627 1.29061 1.85223 1.86347 1.21004 1.01354 0.89008 0.88117 0.92862 0.96043 0.96098 0.91561 0.91502 0.85227 0.85245 0.90759 0.88054 0.89763 0.90806 0.89195 0.90653 0.74934 0.76091 0.86987 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.61 -9.05 6.18 37.16 0.23 -8.82 16 12 S 2.59 36.69 5.45 -107.50 -0.59 36.11 16 13 O -0.96 -15.68 16.59 -57.54 -0.95 -16.63 16 14 O -0.96 -16.15 16.58 -57.54 -0.95 -17.11 16 15 N -1.00 -10.32 3.23 -113.77 -0.37 -10.69 16 16 C 0.11 0.89 6.43 -3.71 -0.02 0.87 16 17 C -0.12 -0.72 6.08 -26.61 -0.16 -0.89 16 18 C -0.10 -0.51 5.03 -26.69 -0.13 -0.64 16 19 C -0.60 -4.16 2.99 -26.83 -0.08 -4.24 16 20 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 21 S 2.62 20.59 5.41 -107.50 -0.58 20.01 16 22 N -1.25 -5.04 9.34 60.35 0.56 -4.48 16 23 O -0.95 -11.48 18.10 -57.54 -1.04 -12.52 16 24 O -0.95 -10.34 18.02 -57.54 -1.04 -11.38 16 25 C 0.13 1.24 5.70 -3.93 -0.02 1.21 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.87 6.86 -51.93 -0.36 0.51 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.14 6.80 -51.93 -0.35 -0.22 16 39 H 0.42 1.33 8.96 -34.47 -0.31 1.02 16 40 H 0.41 0.51 7.54 -34.47 -0.26 0.25 16 41 H 0.11 1.11 6.85 -51.93 -0.36 0.76 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -40.24 364.76 -10.88 -51.11 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.25 Total: -2.99 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -0.88 Total: -27.68 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.93 Total: -40.95 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -3.99 Total: -57.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 57.28 SS G_CDS: -1.17 Total: 56.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -40.24 -10.88 -51.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319935701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.618 kcal (2) G-P(sol) polarization free energy of solvation -40.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds