Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48498 * 109.47494 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47058 * 29.99983 * 3 2 1 6 6 H 1.48500 * 109.47415 * 149.99857 * 3 2 1 7 7 C 1.38797 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00088 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99889 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.64039 * 31.85914 * 14 13 11 16 16 C 1.54326 * 110.72095 * 268.52082 * 14 13 11 17 17 N 1.47016 * 107.27146 * 219.44359 * 16 14 13 18 18 C 1.34783 * 125.64859 * 179.21006 * 17 16 14 19 19 O 1.21611 * 120.00168 * 174.98668 * 18 17 16 20 20 C 1.47384 * 119.99448 * 354.98102 * 18 17 16 21 21 C 1.47021 * 127.18793 * 185.41089 * 20 18 17 22 22 C 1.34177 * 105.95600 * 179.83078 * 21 20 18 23 23 O 1.34222 * 109.12260 * 0.43434 * 22 21 20 24 24 C 1.33661 * 110.90548 * 359.70818 * 23 22 21 25 25 C 1.47417 * 108.70819 * 358.94204 * 17 16 14 26 26 C 1.54912 * 104.82972 * 24.12746 * 25 17 16 27 27 H 1.08992 * 111.00660 * 81.10534 * 26 25 17 28 28 O 1.42909 * 111.00521 * 204.92210 * 26 25 17 29 29 H 0.96995 * 120.00484 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46953 * 59.99913 * 10 9 7 31 31 H 1.08994 * 109.47209 * 300.00209 * 10 9 7 32 32 H 0.97001 * 120.00175 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.88172 * 100.02496 * 16 14 13 34 34 H 1.09002 * 109.88199 * 338.86163 * 16 14 13 35 35 H 1.08006 * 127.02365 * 359.97438 * 21 20 18 36 36 H 1.07999 * 125.44479 * 180.14330 * 22 21 20 37 37 H 1.07997 * 125.79722 * 179.97438 * 24 23 22 38 38 H 1.08997 * 110.37165 * 142.96605 * 25 17 16 39 39 H 1.09007 * 110.36796 * 265.29113 * 25 17 16 40 40 H 0.96701 * 113.99413 * 298.54505 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0018 14 6 2.3306 -7.7150 0.0019 15 1 1.3848 -7.7712 -0.5370 16 6 2.1734 -8.2391 1.4448 17 7 2.5993 -9.6463 1.4470 18 6 2.6255 -10.4574 2.5231 19 8 2.9102 -11.6324 2.3921 20 6 2.3091 -9.9202 3.8586 21 6 2.3956 -10.6278 5.1444 22 6 2.0158 -9.7429 6.0787 23 8 1.7019 -8.5818 5.4828 24 6 1.8692 -8.6645 4.1593 25 6 2.9868 -10.0251 0.0760 26 6 3.3702 -8.6905 -0.6107 27 1 4.3860 -8.3943 -0.3494 28 8 3.2145 -8.7807 -2.0284 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8906 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0022 33 1 1.1305 -8.1670 1.7539 34 1 2.8032 -7.6601 2.1202 35 1 2.7044 -11.6503 5.3045 36 1 1.9656 -9.9355 7.1402 37 1 1.6868 -7.8718 3.4488 38 1 3.8420 -10.7006 0.0964 39 1 2.1472 -10.4901 -0.4407 40 1 3.7759 -9.4495 -2.4439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341248894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -83.017373 kcal Electronic energy + Delta-G solvation = -26467.541890 eV Core-core repulsion = 22376.233315 eV Total energy + Delta-G solvation = -4091.308575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.87219 -40.68934 -39.23862 -38.05440 -36.07043 -34.24032 -33.21746 -32.47058 -31.03214 -30.34850 -28.84158 -28.11691 -25.54766 -24.98472 -22.62310 -22.01792 -21.45661 -20.59652 -20.23363 -18.13187 -18.01918 -17.82091 -17.09770 -16.57142 -16.46786 -16.13174 -15.93720 -15.49892 -15.14501 -14.84576 -14.81944 -14.26018 -14.14549 -13.94447 -13.43534 -13.30267 -13.25577 -13.21996 -12.85220 -12.82252 -12.54772 -12.41668 -11.88373 -11.22268 -11.09784 -11.06679 -10.82947 -10.77416 -10.39770 -10.15742 -9.86725 -9.58305 -9.25479 -9.16520 -9.11153 -9.08502 -8.30138 -6.55498 -6.25871 -3.97060 1.00790 1.73625 2.27930 2.67042 2.83514 2.89090 3.00562 3.19763 3.23668 3.27750 3.51985 3.56755 3.98215 4.15915 4.16264 4.26102 4.30365 4.53346 4.59256 4.72312 4.78310 5.01408 5.04715 5.09643 5.15820 5.21792 5.30907 5.34281 5.47766 5.53710 5.68351 5.77707 5.80064 5.95584 6.05830 6.34838 6.62685 6.97905 7.14106 7.47229 7.55747 7.76902 8.30937 8.41416 9.19691 10.81517 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.002576 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.598311 B =10867.393638 C =12495.069945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.511 6.511 13 N -0.728 5.728 14 C 0.148 3.852 15 H 0.121 0.879 16 C 0.076 3.924 17 N -0.612 5.612 18 C 0.608 3.392 19 O -0.535 6.535 20 C -0.240 4.240 21 C -0.166 4.166 22 C -0.039 4.039 23 O -0.170 6.170 24 C 0.020 3.980 25 C 0.080 3.920 26 C 0.085 3.915 27 H 0.082 0.918 28 O -0.544 6.544 29 H 0.269 0.731 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.210 0.790 37 H 0.220 0.780 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -20.892 5.864 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.383 5.383 14 C 0.041 3.959 15 H 0.138 0.862 16 C -0.048 4.048 17 N -0.348 5.348 18 C 0.399 3.601 19 O -0.412 6.412 20 C -0.245 4.245 21 C -0.186 4.186 22 C -0.105 4.105 23 O -0.065 6.065 24 C -0.051 4.051 25 C -0.043 4.043 26 C 0.025 3.975 27 H 0.100 0.900 28 O -0.349 6.349 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.237 0.763 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.177 0.823 36 H 0.226 0.774 37 H 0.236 0.764 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.862 -21.056 6.122 22.977 hybrid contribution 2.895 0.743 -0.161 2.993 sum 9.757 -20.313 5.962 23.310 Atomic orbital electron populations 1.70006 1.05955 1.27537 1.46732 1.24990 0.95029 0.99054 0.94476 0.86165 0.79402 0.81541 0.78378 1.20256 1.20744 1.19687 1.22854 0.94900 0.91586 1.59123 0.90891 1.85413 1.04640 0.96353 1.96743 1.23539 1.06810 0.94971 1.05148 1.20416 0.86502 0.86283 0.74587 1.90722 1.15252 1.85448 1.46981 1.45927 1.10191 1.04183 1.77957 1.21742 0.99418 0.81523 0.93263 0.86153 1.22930 1.01513 0.81629 0.98753 1.48024 1.66609 1.12086 1.08121 1.16888 0.76656 0.84630 0.81952 1.90793 1.49301 1.15506 1.85642 1.21366 1.13215 0.95466 0.94403 1.22740 1.04976 1.01171 0.89684 1.24014 1.04173 0.83097 0.99222 1.83874 1.66816 1.36039 1.19758 1.25378 0.98467 0.98501 0.82727 1.22940 1.01872 0.97506 0.81988 1.23195 0.98618 0.93805 0.81915 0.90011 1.86634 1.68213 1.62178 1.17882 0.92129 0.89037 0.88981 0.76337 0.89290 0.89767 0.82268 0.77386 0.76443 0.89435 0.89789 0.76788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 11 C 0.54 8.87 7.85 -10.99 -0.09 8.79 16 12 O -0.51 -10.46 15.51 5.56 0.09 -10.38 16 13 N -0.73 -8.17 5.10 -52.03 -0.27 -8.44 16 14 C 0.15 1.50 3.05 -66.09 -0.20 1.29 16 15 H 0.12 1.52 7.55 -51.93 -0.39 1.13 16 16 C 0.08 0.69 4.77 -3.07 -0.01 0.67 16 17 N -0.61 -6.00 3.33 -171.80 -0.57 -6.57 16 18 C 0.61 7.37 7.84 -12.54 -0.10 7.28 16 19 O -0.53 -8.09 17.28 5.27 0.09 -8.00 16 20 C -0.24 -2.60 6.28 -103.28 -0.65 -3.25 16 21 C -0.17 -1.56 11.02 -37.45 -0.41 -1.98 16 22 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 23 O -0.17 -1.64 10.52 7.61 0.08 -1.56 16 24 C 0.02 0.19 10.63 30.07 0.32 0.51 16 25 C 0.08 0.65 6.62 -2.53 -0.02 0.63 16 26 C 0.09 0.64 4.06 -24.58 -0.10 0.54 16 27 H 0.08 0.48 8.01 -51.93 -0.42 0.07 16 28 O -0.54 -4.35 13.47 -35.23 -0.47 -4.82 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.40 3.38 8.56 -40.82 -0.35 3.03 16 33 H 0.09 0.83 7.15 -51.93 -0.37 0.45 16 34 H 0.08 0.67 6.67 -51.93 -0.35 0.32 16 35 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.22 1.71 4.50 -52.49 -0.24 1.48 16 38 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.38 1.26 9.11 45.56 0.42 1.68 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -37.88 361.48 -6.37 -44.25 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.77 Total: 3.39 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.49 Total: -0.63 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.10 Total: -39.88 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.22 Total: -24.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.88 -6.37 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341248894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.771 kcal (2) G-P(sol) polarization free energy of solvation -37.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds