Wall clock time and date at job start Sat Apr 11 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48498 * 109.47494 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47058 * 29.99983 * 3 2 1 6 6 H 1.48500 * 109.47415 * 149.99857 * 3 2 1 7 7 C 1.38797 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00088 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99776 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99889 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.64039 * 31.85914 * 14 13 11 16 16 C 1.54326 * 110.72095 * 268.52082 * 14 13 11 17 17 N 1.47016 * 107.27146 * 219.44359 * 16 14 13 18 18 C 1.34783 * 125.64859 * 179.21006 * 17 16 14 19 19 O 1.21611 * 120.00168 * 174.98668 * 18 17 16 20 20 C 1.47384 * 119.99448 * 354.98102 * 18 17 16 21 21 C 1.47021 * 127.18793 * 185.41089 * 20 18 17 22 22 C 1.34177 * 105.95600 * 179.83078 * 21 20 18 23 23 O 1.34222 * 109.12260 * 0.43434 * 22 21 20 24 24 C 1.33661 * 110.90548 * 359.70818 * 23 22 21 25 25 C 1.47417 * 108.70819 * 358.94204 * 17 16 14 26 26 C 1.54912 * 104.82972 * 24.12746 * 25 17 16 27 27 H 1.08992 * 111.00660 * 81.10534 * 26 25 17 28 28 O 1.42909 * 111.00521 * 204.92210 * 26 25 17 29 29 H 0.96995 * 120.00484 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46953 * 59.99913 * 10 9 7 31 31 H 1.08994 * 109.47209 * 300.00209 * 10 9 7 32 32 H 0.97001 * 120.00175 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.88172 * 100.02496 * 16 14 13 34 34 H 1.09002 * 109.88199 * 338.86163 * 16 14 13 35 35 H 1.08006 * 127.02365 * 359.97438 * 21 20 18 36 36 H 1.07999 * 125.44479 * 180.14330 * 22 21 20 37 37 H 1.07997 * 125.79722 * 179.97438 * 24 23 22 38 38 H 1.08997 * 110.37165 * 142.96605 * 25 17 16 39 39 H 1.09007 * 110.36796 * 265.29113 * 25 17 16 40 40 H 0.96701 * 113.99413 * 298.54505 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3430 0.0018 14 6 2.3306 -7.7150 0.0019 15 1 1.3848 -7.7712 -0.5370 16 6 2.1734 -8.2391 1.4448 17 7 2.5993 -9.6463 1.4470 18 6 2.6255 -10.4574 2.5231 19 8 2.9102 -11.6324 2.3921 20 6 2.3091 -9.9202 3.8586 21 6 2.3956 -10.6278 5.1444 22 6 2.0158 -9.7429 6.0787 23 8 1.7019 -8.5818 5.4828 24 6 1.8692 -8.6645 4.1593 25 6 2.9868 -10.0251 0.0760 26 6 3.3702 -8.6905 -0.6107 27 1 4.3860 -8.3943 -0.3494 28 8 3.2145 -8.7807 -2.0284 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8906 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0022 33 1 1.1305 -8.1670 1.7539 34 1 2.8032 -7.6601 2.1202 35 1 2.7044 -11.6503 5.3045 36 1 1.9656 -9.9355 7.1402 37 1 1.6868 -7.8718 3.4488 38 1 3.8420 -10.7006 0.0964 39 1 2.1472 -10.4901 -0.4407 40 1 3.7759 -9.4495 -2.4439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341248894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:43 Heat of formation + Delta-G solvation = -114.513512 kcal Electronic energy + Delta-G solvation = -26468.907665 eV Core-core repulsion = 22376.233315 eV Total energy + Delta-G solvation = -4092.674350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.58056 -41.57071 -40.40624 -38.99011 -36.80112 -35.35981 -34.55664 -33.96356 -31.94970 -31.32594 -29.76082 -29.06552 -27.62649 -25.83038 -23.43823 -22.71638 -22.23180 -21.76792 -21.00344 -19.83882 -18.83625 -18.64089 -18.01713 -17.76216 -17.25515 -17.00792 -16.89185 -16.84931 -16.44772 -16.31676 -15.86357 -15.50314 -15.08768 -14.86061 -14.72115 -14.43460 -14.19332 -13.98834 -13.96969 -13.63299 -13.54876 -13.43729 -13.13733 -12.98153 -12.86951 -12.59676 -11.95583 -11.69359 -11.56074 -11.24220 -11.12014 -10.95882 -10.92516 -10.30133 -10.23710 -9.95305 -9.82696 -8.62735 -8.32388 -6.09343 0.22438 1.06673 1.26364 1.43821 1.44346 1.51666 1.57186 1.63678 2.02671 2.10649 2.22039 2.30102 2.89217 3.02178 3.17970 3.34640 3.43573 3.55230 3.67361 3.85572 3.89751 3.97059 4.01192 4.11033 4.33827 4.38179 4.46568 4.54936 4.56630 4.64220 4.67233 4.77612 4.86977 5.05610 5.29881 5.32098 5.45010 5.93842 6.13610 6.22410 6.43254 6.78760 6.88411 7.09654 7.19660 8.76557 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.002576 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.598311 B =10867.393638 C =12495.069945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.557 6.557 13 N -0.700 5.700 14 C 0.143 3.857 15 H 0.094 0.906 16 C 0.080 3.920 17 N -0.607 5.607 18 C 0.604 3.396 19 O -0.574 6.574 20 C -0.263 4.263 21 C -0.191 4.191 22 C -0.022 4.022 23 O -0.180 6.180 24 C 0.023 3.977 25 C 0.079 3.921 26 C 0.104 3.896 27 H 0.110 0.890 28 O -0.563 6.563 29 H 0.270 0.730 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.421 0.579 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.249 0.751 37 H 0.230 0.770 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -20.760 6.440 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.434 6.434 13 N -0.354 5.354 14 C 0.036 3.964 15 H 0.112 0.888 16 C -0.044 4.044 17 N -0.342 5.342 18 C 0.396 3.604 19 O -0.454 6.454 20 C -0.268 4.268 21 C -0.211 4.211 22 C -0.087 4.087 23 O -0.074 6.074 24 C -0.047 4.047 25 C -0.044 4.044 26 C 0.043 3.957 27 H 0.128 0.872 28 O -0.371 6.371 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.259 0.741 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.181 0.819 36 H 0.265 0.735 37 H 0.246 0.754 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 9.521 -20.951 6.673 23.961 hybrid contribution 2.116 0.559 -0.353 2.217 sum 11.637 -20.392 6.320 24.315 Atomic orbital electron populations 1.70172 1.07934 1.28542 1.48139 1.26088 0.95918 1.03251 0.93872 0.84988 0.78286 0.76245 0.78689 1.19516 1.20511 1.18085 1.23207 0.95376 0.92051 1.58602 0.89824 1.85584 1.10405 0.99141 1.97051 1.23377 1.03650 0.94023 1.07130 1.20070 0.86187 0.86541 0.74512 1.90719 1.17253 1.85903 1.49479 1.45553 1.10521 1.03549 1.75821 1.21766 0.99405 0.81145 0.94086 0.88796 1.22879 1.01761 0.81417 0.98322 1.48012 1.65696 1.12093 1.08374 1.17110 0.76198 0.84296 0.82757 1.90762 1.51421 1.17002 1.86263 1.21492 1.14433 0.96407 0.94434 1.22956 1.06489 1.01945 0.89691 1.24749 1.01722 0.81729 1.00541 1.83893 1.66850 1.36935 1.19765 1.25519 0.97889 0.98271 0.83024 1.23055 1.02144 0.98154 0.81047 1.23074 0.98756 0.92073 0.81804 0.87230 1.86589 1.69338 1.63291 1.17911 0.92069 0.86597 0.87219 0.74090 0.89723 0.88039 0.81883 0.73469 0.75420 0.88400 0.90270 0.74291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.47 29.55 68.60 2.03 44.49 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.54 -29.92 9.50 67.95 0.65 -29.27 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 S -0.15 -7.85 20.57 -56.49 -1.16 -9.01 16 10 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 11 C 0.54 17.32 7.85 87.66 0.69 18.01 16 12 O -0.56 -23.10 15.51 -3.03 -0.05 -23.15 16 13 N -0.70 -14.10 5.10 -436.91 -2.23 -16.33 16 14 C 0.14 2.68 3.05 46.18 0.14 2.82 16 15 H 0.09 2.37 7.55 -2.39 -0.02 2.35 16 16 C 0.08 1.35 4.77 86.73 0.41 1.76 16 17 N -0.61 -11.30 3.33 -815.71 -2.71 -14.01 16 18 C 0.60 14.51 7.84 86.65 0.68 15.19 16 19 O -0.57 -17.52 17.28 -4.07 -0.07 -17.59 16 20 C -0.26 -5.57 6.28 -18.99 -0.12 -5.69 16 21 C -0.19 -3.45 11.02 23.65 0.26 -3.19 16 22 C -0.02 -0.30 12.03 66.89 0.80 0.51 16 23 O -0.18 -3.17 10.52 4.32 0.05 -3.13 16 24 C 0.02 0.42 10.63 67.39 0.72 1.13 16 25 C 0.08 1.16 6.62 86.86 0.57 1.74 16 26 C 0.10 1.30 4.06 31.99 0.13 1.42 16 27 H 0.11 0.84 8.01 -2.39 -0.02 0.82 16 28 O -0.56 -7.69 13.47 -148.98 -2.01 -9.70 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 32 H 0.42 5.49 8.56 -92.71 -0.79 4.70 16 33 H 0.08 1.54 7.15 -2.38 -0.02 1.53 16 34 H 0.10 1.39 6.67 -2.39 -0.02 1.37 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.25 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.23 3.35 4.50 -2.91 -0.01 3.33 16 38 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.41 1.59 9.11 -74.06 -0.67 0.91 16 Total: -1.00 -85.25 361.48 -0.38 -85.63 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.35 Total: 15.89 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.84 Total: 1.44 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -4.66 Total: -84.87 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -2.08 Total: -53.56 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -85.25 -0.38 -85.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341248894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.880 kcal (2) G-P(sol) polarization free energy of solvation -85.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds